MD09G1122000.v1.1

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018294
Physical Location & Seq
Forward (+)
9416714 .. 9417250
537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1122000.v1.1.491

Sequence Viewer

Length: 537 bp
ATGGCTTTCTGGCTCTTCATCTTTCTACTATTTGCAGTTGGAGATTCCAAGCCTACAAATCCGATCAACCAAACCAATCTGCAGGCAGCCATGGCGGACATGAGAACGCGGTCTTACCATGGATTTTTTATCCTCCTTAAGTTCGTAAATAACAGCATCCCGGATTCGCTGCAGAATTCCGGCATAACTTTCCTCATGCCAAATGATCACGAAATATCGGAAGCTGCAGTCACACCTGACCAAATCCATGAATTCATCCTCAGCCATTCAATACCGACGGTACTAGATCTTTTGCGTTTTCCGAATGGAACTCTGGCTCCGTCAAACATCCCCAGCAAGATCATCACCGTCACCAAGTCCAAAAGATCAAGCCTGTTCTTAAACAATGCTAAAATTGTCACTCCAAATGTCTGTGTAAGCTCTACAATTAGGTGTCATGGTATTAGCACCACTATGACGTTCAACGACCTTCATGCTCATGCCGGTCACCTTACCCATCAATCTTCGTGCTCCCGGTTTCATGGTTTACCGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

179

Amino Acids

19.72

Weight (kDa)

8.93

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26730
malus_domestica MD09G1122000.v1.1
prunus_persica Prupe.3G201600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0156681
rosa_laevigata RLG00000020931
rosa_multiflora Rmu_sc0001130.1_g000004
rosa_roxburghii Rroxscaffold_2G00092840
rosa_samantha Rh2BG534200 Rh2DG543000
rosa_wichuraiana Rw2G042990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 95, 109
AcsI RAATTY 2 cut(s) 175, 251
AfaI GTAC 1 cut(s) 282
AflII CTTAAG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 270, 463
AloI GAACNNNNNNTCC 2 cut(s) 301, 333
AluBI AGCT 2 cut(s) 224, 420
AluI AGCT 2 cut(s) 224, 420
Alw21I GWGCWC 1 cut(s) 512
ApeKI GCWGC 3 cut(s) 86, 169, 224
ApoI RAATTY 2 cut(s) 175, 251
AsuC2I CCSGG 2 cut(s) 161, 514
AsuHPI GGTGA 3 cut(s) 337, 343, 479
Bbv12I GWGCWC 1 cut(s) 512
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 98, 156, 211
BccI CCATC 1 cut(s) 504
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 2 cut(s) 161, 514
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 3 cut(s) 80, 170, 225
BfrI CTTAAG 1 cut(s) 137
BglII AGATCT 1 cut(s) 286
BisI GCNGC 3 cut(s) 87, 170, 225
BlsI GCNGC 3 cut(s) 88, 171, 226
Bme1390I CCNGG 2 cut(s) 161, 514
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 2 cut(s) 161, 514
BmsI GCATC 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 161, 514
BsaJI CCNNGG 2 cut(s) 90, 118
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse118I RCCGGY 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 90, 118
BseGI GGATG 3 cut(s) 156, 255, 327
BseMII CTCAG 1 cut(s) 274
BseXI GCAGC 3 cut(s) 98, 156, 211
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 512
BsiSI CCGG 4 cut(s) 161, 180, 483, 514
Bsp1286I GDGCHC 1 cut(s) 512
Bsp143I GATC 5 cut(s) 63, 205, 286, 339, 365
Bsp19I CCATGG 2 cut(s) 90, 118
BspACI CCGC 2 cut(s) 95, 109
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 318
BspMAI CTGCAG 3 cut(s) 84, 174, 229
BspQI GCTCTTC 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 90, 118
BssMI GATC 5 cut(s) 63, 205, 286, 339, 365
BssT1I CCWWGG 2 cut(s) 90, 118
Bst4CI ACNGT 2 cut(s) 280, 349
Bst6I CTCTTC 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 260
BstDSI CCRYGG 2 cut(s) 90, 118
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 3 cut(s) 156, 255, 327
BstFNI CGCG 1 cut(s) 109
BstKTI GATC 5 cut(s) 66, 208, 289, 342, 368
BstMBI GATC 5 cut(s) 63, 205, 286, 339, 365
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 159, 512
BstSFI CTRYAG 3 cut(s) 80, 170, 225
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 98, 156, 211
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtgI CCRYGG 2 cut(s) 90, 118
BtsCI GGATG 3 cut(s) 156, 255, 327
Cac8I GCNNGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 482
Csp6I GTAC 1 cut(s) 281
CviAII CATG 9 cut(s) 91, 100, 119, 196, 248, 437, 473, 479, 521
CviJI RGCY 9 cut(s) 5, 13, 52, 89, 224, 264, 317, 372, 420
CviKI_1 RGCY 9 cut(s) 5, 13, 52, 89, 224, 264, 317, 372, 420
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 260
DpnI GATC 5 cut(s) 65, 207, 288, 341, 367
DpnII GATC 5 cut(s) 63, 205, 286, 339, 365
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 90, 118
Eco91I GGTNACC 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 485
EcoRI GAATTC 2 cut(s) 175, 251
EcoT14I CCWWGG 2 cut(s) 90, 118
ErhI CCWWGG 2 cut(s) 90, 118
FaeI CATG 9 cut(s) 94, 103, 122, 199, 251, 440, 476, 482, 524
FatI CATG 9 cut(s) 90, 99, 118, 195, 247, 436, 472, 478, 520
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 87, 170, 225
FokI GGATG 3 cut(s) 143, 242, 314
Fsp4HI GCNGC 3 cut(s) 87, 170, 225
FspBI CTAG 1 cut(s) 284
GluI GCNGC 3 cut(s) 87, 170, 225
GsaI CCCAGC 1 cut(s) 336
HapII CCGG 4 cut(s) 161, 180, 483, 514
Hin1II CATG 9 cut(s) 94, 103, 122, 199, 251, 440, 476, 482, 524
HinfI GANTC 2 cut(s) 44, 164
HpaII CCGG 4 cut(s) 161, 180, 483, 514
HphI GGTGA 3 cut(s) 337, 343, 479
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 3 cut(s) 63, 220, 303
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 527
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 479
HpyCH4III ACNGT 2 cut(s) 280, 349
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 35, 82, 172, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 9 cut(s) 94, 103, 122, 199, 251, 440, 476, 482, 524
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 63, 205, 286, 339, 365
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 2 cut(s) 322, 515
LpnPI CCDG 9 cut(s) 68, 174, 193, 249, 299, 346, 386, 496, 527
Lsp1109I GCAGC 3 cut(s) 98, 156, 211
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 4 cut(s) 229, 349, 397, 485
MalI GATC 5 cut(s) 65, 207, 288, 341, 367
MboI GATC 5 cut(s) 63, 205, 286, 339, 365
MboII GAAGA 2 cut(s) 7, 495
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 4 cut(s) 175, 251, 393, 426
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 143, 203, 269
MseI TTAA 2 cut(s) 138, 380
MslI CAYNNNNRTG 2 cut(s) 452, 477
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 4 cut(s) 161, 180, 483, 514
MspR9I CCNGG 2 cut(s) 161, 514
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 2 cut(s) 161, 514
NcoI CCATGG 2 cut(s) 90, 118
NdeII GATC 5 cut(s) 63, 205, 286, 339, 365
NlaIII CATG 9 cut(s) 94, 103, 122, 199, 251, 440, 476, 482, 524
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 4 cut(s) 229, 349, 397, 485
PciSI GCTCTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 44, 164
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 88, 171, 226
PspEI GGTNACC 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 318
PstI CTGCAG 3 cut(s) 84, 174, 229
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 2 cut(s) 452, 477
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 138, 380
SatI GCNGC 3 cut(s) 87, 170, 225
Sau3AI GATC 5 cut(s) 63, 205, 286, 339, 365
ScrFI CCNGG 2 cut(s) 161, 514
SduI GDGCHC 1 cut(s) 512
SetI ASST 7 cut(s) 226, 238, 422, 434, 461, 471, 492
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 3 cut(s) 80, 170, 225
SmiMI CAYNNNNRTG 2 cut(s) 452, 477
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 4 cut(s) 175, 251, 393, 426
SsiI CCGC 2 cut(s) 95, 109
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 2 cut(s) 159, 512
StyI CCWWGG 2 cut(s) 90, 118
TaaI ACNGT 2 cut(s) 280, 349
TaiI ACGT 1 cut(s) 461
TasI AATT 4 cut(s) 175, 251, 393, 426
TfiI GAWTC 2 cut(s) 44, 164
Tru1I TTAA 2 cut(s) 138, 380
Tru9I TTAA 2 cut(s) 138, 380
TseFI GTSAC 4 cut(s) 229, 349, 397, 485
TseI GCWGC 3 cut(s) 86, 169, 224
Tsp45I GTSAC 4 cut(s) 229, 349, 397, 485
TspDTI ATGAA 5 cut(s) 7, 244, 264, 461, 509
TspGWI ACGGA 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 137
XapI RAATTY 2 cut(s) 175, 251
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.