Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014536

Physical Location & Seq

Genomic Coordinates Forward (+)

9815500 .. 9817618

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATGCTCGTGGAGCTTAAGAATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTGCGTGAAGTCATATGTACATCAAAGGACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGGTGATTGATAAAGTACAGGAGGAGAAGACACGCACAGATAGAAAACCACCAGGTGTTGGACGTGGAAGAGGACGTGGTGTGGATGATGGAGGAGCCAGAGGCAGAGGCAGAGGAACTTCAATGGGGAAGATGGGTGGCAACAGAGGAGCAGGTCGCGGCCGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

129

Amino Acids

14.32

Weight (kDa)

9.95

Isoelectric Point (pI)

19.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	6 - 70	6.7e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27720
fragaria_vesca	FvH4_2g25520
malus_domestica	MD03G1286000.v1.1 MD11G1305900.v1.1
prunus_persica	Prupe.8G259300_v2.0.a1
pyrus_communis	pycom03g22670 pycom11g26770
rosa_chinensis	RchiOBHm_Chr6g0293731
rosa_laevigata	RLG00000011928
rosa_multiflora	Rmu_co8509229.1_g000001 Rmu_sc0005641.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173940
rosa_rugosa	Rorug06G0237600 Rorug06G0237600 Rorug06G0237700
rosa_samantha	Rh6CG364800
rosa_wichuraiana	Rw6G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	362
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccII	CGCG	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	379
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	3 cut(s)	136, 203, 237
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	342
AjiI	CACGTC	2 cut(s)	284, 296
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	100, 235
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	3 cut(s)	123, 302, 346
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	2 cut(s)	17, 379
BlsI	GCNGC	2 cut(s)	18, 380
Bme1390I	CCNGG	1 cut(s)	273
BmgBI	CACGTC	2 cut(s)	284, 296
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	46, 156
BpiI	GAAGAC	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	184, 382
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse8I	GATNNNNATC	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	184, 382
BseGI	GGATG	6 cut(s)	37, 111, 111, 171, 223, 310
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseRI	GAGGAG	3 cut(s)	257, 327, 381
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	170, 215
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	381
Bsp13I	TCCGGA	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	134
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	381
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	184, 382
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	134
BstDSI	CCRYGG	2 cut(s)	184, 382
BstF5I	GGATG	6 cut(s)	37, 111, 111, 171, 223, 310
BstFNI	CGCG	1 cut(s)	378
BstMAI	GTCTC	1 cut(s)	62
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 52
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	254
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	2 cut(s)	184, 382
BtrI	CACGTC	2 cut(s)	284, 296
BtsCI	GGATG	6 cut(s)	37, 111, 111, 171, 223, 310
BveI	ACCTGC	1 cut(s)	362
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	135, 202, 236
CviJI	RGCY	3 cut(s)	55, 317, 381
CviKI_1	RGCY	3 cut(s)	55, 317, 381
CviQI	GTAC	3 cut(s)	135, 202, 236
DraIII	CACNNNGTG	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
EclXI	CGGCCG	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	271
FaiI	YATR	5 cut(s)	44, 73, 131, 133, 180
FauNDI	CATATG	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	17, 379
FokI	GGATG	6 cut(s)	24, 98, 118, 178, 230, 317
Fsp4HI	GCNGC	2 cut(s)	17, 379
GluI	GCNGC	2 cut(s)	17, 379
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	2 cut(s)	170, 215
HpaII	CCGG	2 cut(s)	170, 215
HphI	GGTGA	2 cut(s)	100, 235
Hpy188III	TCNNGA	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	283, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 52
HpySE526I	ACGT	2 cut(s)	283, 295
Kpn2I	TCCGGA	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	52, 314, 368
LpnPI	CCDG	7 cut(s)	183, 224, 228, 258, 285, 331, 357
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	2 cut(s)	46, 156
MabI	ACCWGGT	1 cut(s)	271
MaeII	ACGT	2 cut(s)	283, 295
MaeIII	GTNAC	1 cut(s)	188
MboII	GAAGA	3 cut(s)	259, 300, 361
MluCI	AATT	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	2 cut(s)	21, 57
MslI	CAYNNNNRTG	1 cut(s)	120
MspCI	CTTAAG	1 cut(s)	56
MspI	CCGG	2 cut(s)	170, 215
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	43, 52
NdeI	CATATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	18, 380
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	316
RsaI	GTAC	3 cut(s)	136, 203, 237
RsaNI	GTAC	3 cut(s)	135, 202, 236
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	21, 57
SatI	GCNGC	2 cut(s)	17, 379
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	7 cut(s)	57, 207, 225, 277, 286, 298, 376
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	46, 156
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	30, 56
SmoI	CTYRAG	2 cut(s)	30, 56
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	271
TaiI	ACGT	2 cut(s)	286, 298
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	91
TatI	WGTACW	2 cut(s)	134, 235
TauI	GCSGC	1 cut(s)	381
Tru1I	TTAA	2 cut(s)	21, 57
Tru9I	TTAA	2 cut(s)	21, 57
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	2 cut(s)	162, 173
Van91I	CCANNNNNTGG	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.