Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509229.1

Orthogroup ID

OG0014536

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1412

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

cttccgctttcactgctcaagactgcccaagggcaccccatgttggtggagcttaagaatggggagacttacaatggccatttggtgaactgcgatacttggatgaacatccatcttcgagaagtcatctgcacttccaaagatggagacaggttttggaggatgcccgagtgctacattcgtgggaatactattaagtatctgcgagttcctgatgaggtgatcgacaaggttcaggaagaaaccaagagaacagataggaaaccaccgggagtagggcgtggaagaggaagaggaggtagggaggacgctcctggtggacgacaaccaaaaggcattggacgtggcatggaggatggtgctaagggtgctagtggaggtcgaggcagaggtggaccaggtggaaaggctggtggaagaggtggaggacgaggccgagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

147

Amino Acids

15.83

Weight (kDa)

10.07

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27720
fragaria_vesca	FvH4_2g25520
malus_domestica	MD03G1286000.v1.1 MD11G1305900.v1.1
prunus_persica	Prupe.8G259300_v2.0.a1
pyrus_communis	pycom03g22670 pycom11g26770
rosa_chinensis	RchiOBHm_Chr6g0293731
rosa_laevigata	RLG00000011928
rosa_multiflora	Rmu_co8509229.1_g000001 Rmu_sc0005641.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173940
rosa_rugosa	Rorug06G0237600 Rorug06G0237600 Rorug06G0237700
rosa_samantha	Rh6CG364800
rosa_wichuraiana	Rw6G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	43, 275
AflII	CTTAAG	1 cut(s)	53
AjiI	CACGTC	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	313, 397
AluBI	AGCT	2 cut(s)	52, 440
AluI	AGCT	2 cut(s)	52, 440
Alw26I	GTCTC	2 cut(s)	59, 141
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	76, 433
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	97, 232
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	33
BccI	CCATC	3 cut(s)	120, 137, 350
BciT130I	CCWGG	2 cut(s)	315, 399
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	2 cut(s)	59, 141
BfaI	CTAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	53
Bme1390I	CCNGG	3 cut(s)	270, 315, 399
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	167
BmgBI	CACGTC	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	270, 315, 399
BmsI	GCATC	1 cut(s)	153
Bpu10I	CCTNAGC	1 cut(s)	363
BpuMI	CCSGG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 275
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	315, 399
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	4 cut(s)	108, 108, 168, 361
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	43, 275
BseRI	GAGGAG	1 cut(s)	309
BseSI	GKGCMC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	78, 435
BshNI	GGYRCC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	43, 275
BsmAI	GTCTC	2 cut(s)	59, 141
BsnI	GGCC	2 cut(s)	78, 435
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	78, 435
BspLI	GGNNCC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	315, 399
Bst6I	CTCTTC	3 cut(s)	280, 286, 412
BstAFI	CTTAAG	1 cut(s)	53
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	4 cut(s)	108, 108, 168, 361
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	59, 141
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 368
BstNI	CCWGG	2 cut(s)	315, 399
BstSCI	CCNGG	3 cut(s)	268, 313, 397
BstSLI	GKGCMC	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	78, 435
BtrI	CACGTC	1 cut(s)	344
BtsCI	GGATG	4 cut(s)	108, 108, 168, 361
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	397
CviAII	CATG	2 cut(s)	40, 349
CviJI	RGCY	5 cut(s)	52, 78, 410, 435, 440
CviKI_1	RGCY	5 cut(s)	52, 78, 410, 435, 440
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	3 cut(s)	280, 286, 412
EarI	CTCTTC	3 cut(s)	280, 286, 412
Eco130I	CCWWGG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	313, 397
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	43, 352
FaiI	YATR	2 cut(s)	41, 350
FatI	CATG	2 cut(s)	39, 348
FokI	GGATG	4 cut(s)	95, 115, 175, 368
FspBI	CTAG	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	78, 435
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	2 cut(s)	43, 352
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	97, 232
Hpy166II	GTNNAC	3 cut(s)	88, 320, 395
Hpy188III	TCNNGA	4 cut(s)	19, 119, 212, 236
Hpy8I	GTNNAC	3 cut(s)	88, 320, 395
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 368
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	43, 352
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	49, 316
LpnPI	CCDG	9 cut(s)	136, 221, 225, 282, 300, 327, 384, 396, 411
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	1 cut(s)	397
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	343
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MboII	GAAGA	5 cut(s)	107, 251, 297, 303, 429
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	78
Mox20I	TGGCCA	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	2 cut(s)	54, 195
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	78
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	3 cut(s)	270, 315, 399
MvaI	CCWGG	2 cut(s)	315, 399
MwoI	GCNNNNNNNGC	2 cut(s)	13, 368
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	43, 352
NlaIV	GGNNCC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	313, 397
PspGI	CCWGG	2 cut(s)	313, 397
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	54, 195
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	270, 315, 399
SduI	GDGCHC	1 cut(s)	36
SexAI	ACCWGGT	1 cut(s)	397
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	17, 53
SmoI	CTYRAG	2 cut(s)	17, 53
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	3 cut(s)	268, 313, 397
StyI	CCWWGG	1 cut(s)	28
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	118, 225, 382
Tru1I	TTAA	2 cut(s)	54, 195
Tru9I	TTAA	2 cut(s)	54, 195
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	395
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.