Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014536

Physical Location & Seq

Genomic Coordinates Forward (+)

21983830 .. 21986227

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTCCCTCTATCTTTGCTGAAGACCGCCCAAGGGCACCCCATGCTGGTAGAATTGAAAAATGGGGAGACCTACAATGGCCATTTGGTCAACTGCGACACTTGGATGAACATCCATCTTCGAGAAGTCATTTGTACCTCCAAAGATGGAGACAGGTTTTGGAGAATGCCTGAATGTTACATCCGTGGGAATACAATAAAGTATCTTAGAGTTCCTGATGAGGTGATAGACAAAGTTCAAGAAGAGACCAAGAGCCGTTCAGATAGGAAACCACCTGGAGTAGGGCGTGGAAGAGGAAGAGGAGGTAGGGAGGATGGTCCTGGTGGACGTCAGACTAAAGGCATTGGACGTGGCCTAGATGATGGTGGTTCTAAGGGTGCTGGTGGAGGCCGAGGCAGAGGTGGACCAGGTGGGAAGGCCGGTGGAGGCAGAGGTGGAGGACGAGGACGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

152

Amino Acids

16.1

Weight (kDa)

10.07

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27720
fragaria_vesca	FvH4_2g25520
malus_domestica	MD03G1286000.v1.1 MD11G1305900.v1.1
prunus_persica	Prupe.8G259300_v2.0.a1
pyrus_communis	pycom03g22670 pycom11g26770
rosa_chinensis	RchiOBHm_Chr6g0293731
rosa_laevigata	RLG00000011928
rosa_multiflora	Rmu_co8509229.1_g000001 Rmu_sc0005641.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173940
rosa_rugosa	Rorug06G0237600 Rorug06G0237600 Rorug06G0237700
rosa_samantha	Rh6CG364800
rosa_wichuraiana	Rw6G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	36
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	33, 46, 281
AgsI	TTSAA	2 cut(s)	58, 239
AjiI	CACGTC	1 cut(s)	350
AjnI	CCWGG	3 cut(s)	274, 319, 406
Alw26I	GTCTC	3 cut(s)	62, 144, 239
AoxI	GGCC	4 cut(s)	79, 352, 388, 417
AspS9I	GGNCC	2 cut(s)	317, 404
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	317, 404
BaeGI	GKGCMC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	4 cut(s)	123, 140, 308, 356
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	3 cut(s)	276, 321, 408
BcoDI	GTCTC	3 cut(s)	62, 144, 239
BfaI	CTAG	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	276, 321, 408
Bme18I	GGWCC	2 cut(s)	317, 404
BmgBI	CACGTC	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	317, 404
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	276, 321, 408
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	328
BsaI	GGTCTC	2 cut(s)	62, 239
BsaJI	CCNNGG	3 cut(s)	31, 184, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 46, 281
Bse118I	RCCGGY	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	3 cut(s)	276, 321, 408
BseDI	CCNNGG	3 cut(s)	31, 184, 391
BseGI	GGATG	4 cut(s)	111, 111, 180, 319
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	3 cut(s)	33, 46, 281
BseRI	GAGGAG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	39
BshFI	GGCC	4 cut(s)	81, 354, 390, 419
BshNI	GGYRCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	420
BslI	CCNNNNNNNGG	3 cut(s)	33, 46, 281
BsmAI	GTCTC	3 cut(s)	62, 144, 239
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	81, 354, 390, 419
Bso31I	GGTCTC	2 cut(s)	62, 239
Bsp1286I	GDGCHC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	4 cut(s)	81, 354, 390, 419
BspLI	GGNNCC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	36
BspTNI	GGTCTC	2 cut(s)	62, 239
BsrFI	RCCGGY	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	31, 184, 391
BssNI	GRCGYC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	276, 321, 408
Bst6I	CTCTTC	3 cut(s)	237, 286, 292
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	206, 372
BstDSI	CCRYGG	1 cut(s)	184
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	4 cut(s)	111, 111, 180, 319
BstMAI	GTCTC	3 cut(s)	62, 144, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	3 cut(s)	276, 321, 408
BstSCI	CCNGG	3 cut(s)	274, 319, 406
BstSLI	GKGCMC	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	81, 354, 390, 419
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	350
BtsCI	GGATG	4 cut(s)	111, 111, 180, 319
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	317, 404
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	81, 255, 354, 390, 419
CviKI_1	RGCY	5 cut(s)	81, 255, 354, 390, 419
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	206, 372
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	3 cut(s)	237, 286, 292
EarI	CTCTTC	3 cut(s)	237, 286, 292
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	2 cut(s)	62, 239
Eco47I	GGWCC	2 cut(s)	317, 404
Eco57I	CTGAAG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	274, 319, 406
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
FokI	GGATG	4 cut(s)	98, 118, 167, 326
FspBI	CTAG	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	81, 354, 390, 419
HapII	CCGG	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	91, 326, 404
Hpy188I	TCNGA	2 cut(s)	262, 333
Hpy188III	TCNNGA	3 cut(s)	122, 215, 239
Hpy8I	GTNNAC	3 cut(s)	91, 326, 404
HpyAV	CCTTC	1 cut(s)	409
HpyCH4IV	ACGT	2 cut(s)	328, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	206, 372
HpySE526I	ACGT	2 cut(s)	328, 349
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	9
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	2 cut(s)	328, 349
MaeIII	GTNAC	1 cut(s)	176
MboII	GAAGA	5 cut(s)	34, 110, 254, 303, 309
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	81
MluCI	AATT	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	81
Mox20I	TGGCCA	1 cut(s)	81
MscI	TGGCCA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	81
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	3 cut(s)	276, 321, 408
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	3 cut(s)	276, 321, 408
MwoI	GCNNNNNNNGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	416
PctI	GAATGC	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	274, 319, 406
PspGI	CCWGG	3 cut(s)	274, 319, 406
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	317, 404
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	104
Sau96I	GGNCC	2 cut(s)	317, 404
ScrFI	CCNGG	3 cut(s)	276, 321, 408
SduI	GDGCHC	1 cut(s)	39
SexAI	ACCWGGT	1 cut(s)	406
SinI	GGWCC	2 cut(s)	317, 404
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	274, 319, 406
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	331, 352
TaqI	TCGA	1 cut(s)	121
TasI	AATT	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	317, 404
XagI	CCTNNNNNAGG	1 cut(s)	279
XspI	CTAG	1 cut(s)	356
ZraI	GACGTC	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.