Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014536

Physical Location & Seq

Genomic Coordinates Reverse (-)

38021521 .. 38023366

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0237700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGCAAACAAATGGGGTTTTCCTCTAGTTCTTCTATCCTTGGTCATAGCTGTTCTTAATTTAGCAGAAGCAGCTGTACCAGCAATCTTCATACTAGGTGACTCCACTGCTGATGTTGGCACCAACAACTTCTTGCCAGGTAGCATGGCCAGGGCTGATTTCCCCTACAATGGAATCGACTTTTCTAACTCAACACCCACTGGAAGGTTCAGCAATGGCCTTAATACAGCTGATTTTCTTGCCAAGCTATTGGGTTACGAGAAAAGTCCAAAGCCCTTTCTTTCCCTCAACTCTACTTCTCTTCTCAAGTGGTTTGGAGGCTTCAGCTTTGCTTCTGGAGGGTCTGGCCTTTTTGATACCACTGGACAAAGAATGACGAAAAATTGTATTCCACTAGCAGAGCAGATACAGCAATTTTCGTCGGTCCGGAGTAATCTCACCGCCTTAATGGGCCCGGTAGCAACTGAGACGTATCTTTCAAAGTCTTTGTTCTTCATCAGCATTGGCAGCAATGACATTTTCGAATACTACAGCTCAAACAGTTCAATTCCTGAGGAACAATTCTTGTCCTCTTTAGTACTCGCTTATGAGAATCACTTGAAGACGTTACTCAATCTTGGAGCAAGGAAGTTAGGAATTATCAGCGTCGCACCGATTGGCTGCTGCCCATCTCAGAGATTTTTTAATGCTACTGGCGGCTGTATAGAGGAGCTGAATGATCATGCAAAAGCTTTCCATTCAAAGCTGGATGTGCTTATGCACAAGCTCAGCTCAGAATTTGAGGGCTTGAAGTACTCACTTGGAAATGCATTTGAAATGACTATAAATGTCATACAGAACCCTCTTGCATTCAATTTTACACAAGTGGCAGCTGCATGTTGTGGAACTGGGAAGCTCAATGCTGAAAACTTCTGTAAACCAGATGCAAATCTCTGTTCGAATCGCGATCAATACTTGTTCTGGGATCGATTTCATCCAACACAGGCTGCTTATAAGTTGGCTGCTGTAACCCTCTACGGTGGTGGACCACAATTTGTAACCCCAATTAATTTTGCTCAGTTGGCTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

357

Amino Acids

38.71

Weight (kDa)

5.97

Isoelectric Point (pI)

21.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	29 - 335	1.4e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27720
fragaria_vesca	FvH4_2g25520
malus_domestica	MD03G1286000.v1.1 MD11G1305900.v1.1
prunus_persica	Prupe.8G259300_v2.0.a1
pyrus_communis	pycom03g22670 pycom11g26770
rosa_chinensis	RchiOBHm_Chr6g0293731
rosa_laevigata	RLG00000011928
rosa_multiflora	Rmu_co8509229.1_g000001 Rmu_sc0005641.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173940
rosa_rugosa	Rorug06G0237600 Rorug06G0237600 Rorug06G0237700
rosa_samantha	Rh6CG364800
rosa_wichuraiana	Rw6G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	945
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	2 cut(s)	441, 696
AclWI	GGATC	1 cut(s)	972
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	3 cut(s)	78, 579, 794
AfiI	CCNNNNNNNGG	2 cut(s)	170, 204
AgsI	TTSAA	7 cut(s)	480, 546, 601, 741, 790, 815, 853
AjnI	CCWGG	2 cut(s)	136, 149
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	972
Aor13HI	TCCGGA	1 cut(s)	426
AoxI	GGCC	4 cut(s)	147, 217, 346, 451
ApaI	GGGCCC	1 cut(s)	455
ApeKI	GCWGC	8 cut(s)	71, 507, 660, 663, 869, 872, 986, 1001
ApoI	RAATTY	1 cut(s)	776
AseI	ATTAAT	1 cut(s)	1047
AspS9I	GGNCC	4 cut(s)	424, 451, 452, 1025
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	110, 430
AsuII	TTCGAA	2 cut(s)	522, 938
AvaII	GGWCC	2 cut(s)	424, 1025
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	1 cut(s)	608
BbvCI	CCTCAGC	1 cut(s)	1065
BbvI	GCAGC	8 cut(s)	83, 519, 647, 650, 859, 881, 973, 988
BccI	CCATC	1 cut(s)	676
BciT130I	CCWGG	2 cut(s)	138, 151
BclI	TGATCA	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	3 cut(s)	26, 95, 395
BfmI	CTRYAG	1 cut(s)	529
BisI	GCNGC	9 cut(s)	72, 508, 661, 664, 697, 870, 873, 987, 1002
BlpI	GCTNAGC	1 cut(s)	767
BlsI	GCNGC	9 cut(s)	73, 509, 662, 665, 698, 871, 874, 988, 1003
BmcAI	AGTACT	2 cut(s)	579, 794
Bme1390I	CCNGG	3 cut(s)	138, 151, 455
Bme18I	GGWCC	2 cut(s)	424, 1025
BmgT120I	GGNCC	4 cut(s)	424, 451, 452, 1025
BmiI	GGNNCC	2 cut(s)	121, 453
BmrFI	CCNGG	3 cut(s)	138, 151, 455
BmrI	ACTGGG	1 cut(s)	897
BmsI	GCATC	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	897
BpiI	GAAGAC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	1065
Bpu1102I	GCTNAGC	1 cut(s)	767
Bpu14I	TTCGAA	2 cut(s)	522, 938
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	967
BsaBI	GATNNNNATC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	39, 150
BsaWI	WCCGGW	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 204
Bse1I	ACTGG	4 cut(s)	205, 367, 697, 892
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	220, 517
Bse8I	GATNNNNATC	1 cut(s)	927
BseAI	TCCGGA	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	138, 151
BseCI	ATCGAT	1 cut(s)	967
BseDI	CCNNGG	2 cut(s)	39, 150
BseGI	GGATG	2 cut(s)	754, 973
BseJI	GATNNNNATC	1 cut(s)	927
BseLI	CCNNNNNNNGG	2 cut(s)	170, 204
BseMI	GCAATG	2 cut(s)	220, 517
BseMII	CTCAG	7 cut(s)	456, 543, 686, 781, 786, 1056, 1070
BseNI	ACTGG	4 cut(s)	205, 367, 697, 892
BseRI	GAGGAG	1 cut(s)	722
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	8 cut(s)	83, 519, 647, 650, 859, 881, 973, 988
Bsh1236I	CGCG	1 cut(s)	945
BshFI	GGCC	4 cut(s)	149, 219, 348, 453
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	967
BsiSI	CCGG	2 cut(s)	427, 455
BslI	CCNNNNNNNGG	2 cut(s)	170, 204
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	848
BsnI	GGCC	4 cut(s)	149, 219, 348, 453
Bsp119I	TTCGAA	2 cut(s)	522, 938
Bsp120I	GGGCCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	3 cut(s)	718, 946, 964
Bsp1720I	GCTNAGC	1 cut(s)	767
Bsp68I	TCGCGA	1 cut(s)	945
BspACI	CCGC	2 cut(s)	441, 696
BspANI	GGCC	4 cut(s)	149, 219, 348, 453
BspCNI	CTCAG	7 cut(s)	457, 544, 685, 780, 785, 1057, 1069
BspDI	ATCGAT	1 cut(s)	967
BspEI	TCCGGA	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	945
BspLI	GGNNCC	2 cut(s)	121, 453
BspPI	GGATC	1 cut(s)	972
BspT104I	TTCGAA	2 cut(s)	522, 938
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	220, 517
BsrI	ACTGG	4 cut(s)	205, 367, 697, 892
BssECI	CCNNGG	2 cut(s)	39, 150
BssMI	GATC	3 cut(s)	718, 946, 964
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	138, 151
Bst4CI	ACNGT	2 cut(s)	542, 1019
Bst6I	CTCTTC	1 cut(s)	306
BstBI	TTCGAA	2 cut(s)	522, 938
BstDEI	CTNAG	7 cut(s)	465, 552, 672, 767, 772, 1056, 1065
BstF5I	GGATG	2 cut(s)	754, 973
BstFNI	CGCG	1 cut(s)	945
BstKTI	GATC	3 cut(s)	721, 949, 967
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	718, 946, 964
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 80, 409, 507, 751, 1061
BstNI	CCWGG	2 cut(s)	138, 151
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	3 cut(s)	136, 149, 453
BstSFI	CTRYAG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	945
BstV1I	GCAGC	8 cut(s)	83, 519, 647, 650, 859, 881, 973, 988
BstV2I	GAAGAC	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	967
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	149, 219, 348, 453
BsuTUI	ATCGAT	1 cut(s)	967
BtsCI	GGATG	2 cut(s)	754, 973
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 198, 360
BtuMI	TCGCGA	1 cut(s)	945
Cfr13I	GGNCC	4 cut(s)	424, 451, 452, 1025
ClaI	ATCGAT	1 cut(s)	967
CpoI	CGGWCCG	1 cut(s)	424
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	77, 578, 793
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	3 cut(s)	145, 722, 876
CviQI	GTAC	3 cut(s)	77, 578, 793
DdeI	CTNAG	7 cut(s)	465, 552, 672, 767, 772, 1056, 1065
DpnI	GATC	3 cut(s)	720, 948, 966
DpnII	GATC	3 cut(s)	718, 946, 964
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	424, 1025
Eco57I	CTGAAG	1 cut(s)	307
Eco81I	CCTNAGG	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	136, 149
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	3 cut(s)	148, 725, 879
FatI	CATG	3 cut(s)	144, 721, 875
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	9 cut(s)	72, 508, 661, 664, 697, 870, 873, 987, 1002
FokI	GGATG	2 cut(s)	761, 960
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	9 cut(s)	72, 508, 661, 664, 697, 870, 873, 987, 1002
FspBI	CTAG	3 cut(s)	26, 95, 395
GluI	GCNGC	9 cut(s)	72, 508, 661, 664, 697, 870, 873, 987, 1002
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	4 cut(s)	149, 219, 348, 453
HapII	CCGG	2 cut(s)	427, 455
HgaI	GACGC	1 cut(s)	634
Hin1II	CATG	3 cut(s)	148, 725, 879
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	4 cut(s)	101, 174, 592, 940
HpaII	CCGG	2 cut(s)	427, 455
HphI	GGTGA	2 cut(s)	110, 430
Hpy166II	GTNNAC	2 cut(s)	917, 1025
Hpy188I	TCNGA	2 cut(s)	675, 775
Hpy188III	TCNNGA	4 cut(s)	336, 427, 551, 944
Hpy8I	GTNNAC	2 cut(s)	917, 1025
Hpy99I	CGWCG	2 cut(s)	424, 650
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	542, 1019
HpyCH4IV	ACGT	2 cut(s)	470, 605
HpyCH4V	TGCA	6 cut(s)	725, 760, 809, 848, 875, 926
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 80, 409, 507, 751, 1061
HpyF3I	CTNAG	7 cut(s)	465, 552, 672, 767, 772, 1056, 1065
HpySE526I	ACGT	2 cut(s)	470, 605
Hsp92II	CATG	3 cut(s)	148, 725, 879
Kpn2I	TCCGGA	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	3 cut(s)	718, 946, 964
LmnI	GCTCC	2 cut(s)	620, 709
Lsp1109I	GCAGC	8 cut(s)	83, 519, 647, 650, 859, 881, 973, 988
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	3 cut(s)	26, 95, 395
MaeII	ACGT	2 cut(s)	470, 605
MaeIII	GTNAC	5 cut(s)	98, 254, 606, 1006, 1036
MalI	GATC	3 cut(s)	720, 948, 966
MboI	GATC	3 cut(s)	718, 946, 964
MboII	GAAGA	5 cut(s)	23, 79, 293, 484, 613
MhlI	GDGCHC	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	1001
Mox20I	TGGCCA	1 cut(s)	149
Mph1103I	ATGCAT	1 cut(s)	811
MroI	TCCGGA	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	6 cut(s)	57, 222, 446, 684, 1047, 1072
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	3 cut(s)	74, 230, 872
MspI	CCGG	2 cut(s)	427, 455
MspR9I	CCNGG	3 cut(s)	138, 151, 455
Mva1269I	GAATGC	1 cut(s)	848
MvaI	CCWGG	2 cut(s)	138, 151
MvnI	CGCG	1 cut(s)	945
MwoI	GCNNNNNNNGC	6 cut(s)	71, 80, 409, 507, 751, 1061
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	3 cut(s)	718, 946, 964
NlaIII	CATG	3 cut(s)	148, 725, 879
NlaIV	GGNNCC	2 cut(s)	121, 453
NmuCI	GTSAC	1 cut(s)	98
NruI	TCGCGA	1 cut(s)	945
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	1 cut(s)	879
NspV	TTCGAA	2 cut(s)	522, 938
PctI	GAATGC	1 cut(s)	848
PfeI	GAWTC	3 cut(s)	174, 592, 940
PkrI	GCNGC	9 cut(s)	73, 509, 662, 665, 698, 871, 874, 988, 1003
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	1047
PsiI	TTATAA	1 cut(s)	993
Psp6I	CCWGG	2 cut(s)	136, 149
PspGI	CCWGG	2 cut(s)	136, 149
PspN4I	GGNNCC	2 cut(s)	121, 453
PspOMI	GGGCCC	1 cut(s)	451
PspPI	GGNCC	4 cut(s)	424, 451, 452, 1025
PvuII	CAGCTG	3 cut(s)	74, 230, 872
RruI	TCGCGA	1 cut(s)	945
RsaI	GTAC	3 cut(s)	78, 579, 794
RsaNI	GTAC	3 cut(s)	77, 578, 793
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	6 cut(s)	57, 222, 446, 684, 1047, 1072
SatI	GCNGC	9 cut(s)	72, 508, 661, 664, 697, 870, 873, 987, 1002
Sau3AI	GATC	3 cut(s)	718, 946, 964
Sau96I	GGNCC	4 cut(s)	424, 451, 452, 1025
ScaI	AGTACT	2 cut(s)	579, 794
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	138, 151, 455
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	913
SfcI	CTRYAG	1 cut(s)	529
SfuI	TTCGAA	2 cut(s)	522, 938
SinI	GGWCC	2 cut(s)	424, 1025
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	2 cut(s)	441, 696
SspMI	CTAG	3 cut(s)	26, 95, 395
StyD4I	CCNGG	3 cut(s)	136, 149, 453
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	542, 1019
TaiI	ACGT	2 cut(s)	473, 608
TaqI	TCGA	4 cut(s)	177, 522, 938, 967
TaqII	GACCGA	1 cut(s)	412
TatI	WGTACW	2 cut(s)	577, 792
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	3 cut(s)	174, 592, 940
Tru1I	TTAA	6 cut(s)	57, 222, 446, 684, 1047, 1072
Tru9I	TTAA	6 cut(s)	57, 222, 446, 684, 1047, 1072
TscAI	CASTG	3 cut(s)	112, 205, 367
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	8 cut(s)	71, 507, 660, 663, 869, 872, 986, 1001
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	79, 484, 962
TspRI	CASTG	3 cut(s)	112, 205, 367
VpaK11BI	GGWCC	2 cut(s)	424, 1025
VspI	ATTAAT	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	776
XceI	RCATGY	1 cut(s)	879
XspI	CTAG	3 cut(s)	26, 95, 395
ZrmI	AGTACT	2 cut(s)	579, 794
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.