Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0014536

Physical Location & Seq

Genomic Coordinates Forward (+)

42055838 .. 42057791

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1305900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTTCCTCTTTCTTTGCTGAAGACTGCCCAAGGGCACCCTATGTTGGTAGAATTGAAAAATGGGGAGACTTACAATGGTCATTTGGTCAACTGTGATACTTGGATGAACATCCATCTTCGAGAGGTTATTTGTACCTCTAAAGATGGAGATAGGTTTTGGAGAATGCCTGAATGCTACATCCGTGGGAATACTATTAAGTATCTTAGAGTTCCTGATGAGGTGATTGACAAAGTCCAGGAAGAAACCAAGAATCGTTCAGACAGGAAACCACCTGGAGTAGGGCGTGGGAGAGGAAGAGGTAGGGAGGATGGTCCTGGTGGACGACAGGCTAAAGGCATTGGACGTGGCTTGGATGATGCTGCCAAGGGTGCTGGTGGAGGCCGAGGCAGAGGTGGACCTGGTGGGAAGGCCGGTGGAAGCAGAGGTGGGGGTCGAGGCCGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0017069 GO:0017070 GO:0019222 GO:0019439 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0060255 GO:0065003 GO:0065007 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

150

Amino Acids

16.01

Weight (kDa)

10.07

Isoelectric Point (pI)

29.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	6 - 70	9.5e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014536)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27720
fragaria_vesca	FvH4_2g25520
malus_domestica	MD03G1286000.v1.1 MD11G1305900.v1.1
prunus_persica	Prupe.8G259300_v2.0.a1
pyrus_communis	pycom03g22670 pycom11g26770
rosa_chinensis	RchiOBHm_Chr6g0293731
rosa_laevigata	RLG00000011928
rosa_multiflora	Rmu_co8509229.1_g000001 Rmu_sc0005641.1_g000010
rosa_roxburghii	Rroxscaffold_7G00173940
rosa_rugosa	Rorug06G0237600 Rorug06G0237600 Rorug06G0237700
rosa_samantha	Rh6CG364800
rosa_wichuraiana	Rw6G030520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	46, 281
AgsI	TTSAA	1 cut(s)	58
AjiI	CACGTC	1 cut(s)	347
AjnI	CCWGG	4 cut(s)	237, 274, 316, 400
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	3 cut(s)	382, 411, 439
ApeKI	GCWGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	314, 398
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	314, 398
BaeGI	GKGCMC	1 cut(s)	39
BanI	GGYRCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	3 cut(s)	123, 140, 305
BciT130I	CCWGG	4 cut(s)	239, 276, 318, 402
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	4 cut(s)	239, 276, 318, 402
Bme18I	GGWCC	2 cut(s)	314, 398
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	314, 398
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	4 cut(s)	239, 276, 318, 402
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	31, 184, 366, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 281
Bse118I	RCCGGY	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	110
BseBI	CCWGG	4 cut(s)	239, 276, 318, 402
BseDI	CCNNGG	4 cut(s)	31, 184, 366, 385
BseGI	GGATG	5 cut(s)	111, 111, 180, 316, 361
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	46, 281
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	3 cut(s)	384, 413, 441
BshNI	GGYRCC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	2 cut(s)	46, 281
BsmAI	GTCTC	1 cut(s)	62
BsmI	GAATGC	2 cut(s)	171, 179
BsnI	GGCC	3 cut(s)	384, 413, 441
Bsp1286I	GDGCHC	1 cut(s)	39
BspANI	GGCC	3 cut(s)	384, 413, 441
BspLI	GGNNCC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	413
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	4 cut(s)	31, 184, 366, 385
BssT1I	CCWWGG	2 cut(s)	31, 366
Bst2UI	CCWGG	4 cut(s)	239, 276, 318, 402
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	184
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	5 cut(s)	111, 111, 180, 316, 361
BstMAI	GTCTC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	4 cut(s)	239, 276, 318, 402
BstSCI	CCNGG	4 cut(s)	237, 274, 316, 400
BstSLI	GKGCMC	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	349
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	3 cut(s)	384, 413, 441
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	5 cut(s)	111, 111, 180, 316, 361
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	314, 398
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	6 cut(s)	332, 351, 384, 413, 441, 446
CviKI_1	RGCY	6 cut(s)	332, 351, 384, 413, 441, 446
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	31, 366
Eco47I	GGWCC	2 cut(s)	314, 398
Eco57I	CTGAAG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoRII	CCWGG	4 cut(s)	237, 274, 316, 400
EcoT14I	CCWWGG	2 cut(s)	31, 366
ErhI	CCWWGG	2 cut(s)	31, 366
FaiI	YATR	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	5 cut(s)	98, 118, 167, 323, 368
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	384, 413, 441
HapII	CCGG	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	91, 323, 398
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	122, 215
Hpy8I	GTNNAC	3 cut(s)	91, 323, 398
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	346
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	1 cut(s)	349
MabI	ACCWGGT	1 cut(s)	400
MaeII	ACGT	1 cut(s)	346
MboII	GAAGA	4 cut(s)	34, 110, 254, 309
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	53
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	4 cut(s)	239, 276, 318, 402
Mva1269I	GAATGC	2 cut(s)	171, 179
MvaI	CCWGG	4 cut(s)	239, 276, 318, 402
MwoI	GCNNNNNNNGC	1 cut(s)	371
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	410
PctI	GAATGC	2 cut(s)	171, 179
PfeI	GAWTC	1 cut(s)	253
PflFI	GACNNNGTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	364
Psp6I	CCWGG	4 cut(s)	237, 274, 316, 400
PspGI	CCWGG	4 cut(s)	237, 274, 316, 400
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	314, 398
PsyI	GACNNNGTC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	314, 398
ScrFI	CCNGG	4 cut(s)	239, 276, 318, 402
SduI	GDGCHC	1 cut(s)	39
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	2 cut(s)	314, 398
Sse9I	AATT	1 cut(s)	53
StyD4I	CCNGG	4 cut(s)	237, 274, 316, 400
StyI	CCWWGG	2 cut(s)	31, 366
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	121, 436
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	314, 398
XagI	CCTNNNNNAGG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.