AT5G28040

transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017895
Physical Location & Seq
Reverse (-)
10035543 .. 10039286
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28040.1

Sequence Viewer

Length: 1284 bp
ATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAAGAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTGAATCCGACGAAGATGTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCAGAATACGAAGATCTGAATTCTCCGTCAATGATTTCCAGAGCTCCGGCGACGAAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCTTCAATTCCATCAGATTCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGACCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACGAGATCGAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCGCCTGATACGGCGCCGTTTTATGAACAGATTAAATCTAAGCTACAGTTAGAGTTTAATAAGAATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAGTTTAGTTCTGGTAAAGAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATCTCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATGTGATGGATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCTGTTATCGGTAATGCGAATGTCGATGTTGATTCGGAGAATGGTTTAGAGAAGAAAGTGACGATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTTGCTCCGTGTGACGGGGTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGTTGTGATTTTGGTGATGGGAGGAATCTTGGAGTGTTGATTGAAGAGACGGTTAAGAATTGTGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAACGGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGGTGTGTTGAGTCCGATGCTAATGCCGTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACAGATTCTTGAGCTGGAAGTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGCCACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGATGA

Protein Analysis

427

Amino Acids

46.91

Weight (kDa)

4.89

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 125 - 221 9.6e-32 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04930 AT3G04930 AT5G28040 AT5G28040
fragaria_vesca FvH4_6g03660
malus_domestica MD04G1219700.v1.1 MD12G1236500.v1.1
prunus_persica Prupe.6G338800_v2.0.a1 Prupe.6G338800_v2.0.a1
pyrus_communis pycom04g19470
rosa_samantha Rh6BG252100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 315, 475
AccII CGCG 1 cut(s) 737
AciI CCGC 9 cut(s) 33, 63, 66, 72, 78, 261, 270, 464, 914
AclWI GGATC 7 cut(s) 18, 152, 158, 164, 261, 274, 860
AcsI RAATTY 2 cut(s) 190, 1132
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 2 cut(s) 276, 1039
AfiI CCNNNNNNNGG 3 cut(s) 896, 1082, 1277
AgsI TTSAA 5 cut(s) 288, 556, 689, 986, 1229
AjnI CCWGG 1 cut(s) 1075
Alw21I GWGCWC 2 cut(s) 217, 1090
Alw26I GTCTC 5 cut(s) 337, 373, 766, 983, 1171
AlwI GGATC 7 cut(s) 18, 152, 158, 164, 261, 274, 860
Ama87I CYCGRG 1 cut(s) 748
ApeKI GCWGC 1 cut(s) 1058
ApoI RAATTY 2 cut(s) 190, 1132
Asp700I GAANNNNTTC 2 cut(s) 333, 1224
AspLEI GCGC 1 cut(s) 478
AsuHPI GGTGA 4 cut(s) 33, 913, 968, 1261
AvaI CYCGRG 1 cut(s) 748
AxyI CCTNAGG 1 cut(s) 235
BamHI GGATCC 1 cut(s) 266
BanI GGYRCC 2 cut(s) 315, 475
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 3 cut(s) 63, 150, 402
Bbv12I GWGCWC 2 cut(s) 217, 1090
BbvI GCAGC 1 cut(s) 1045
BccI CCATC 4 cut(s) 301, 697, 953, 1048
BceAI ACGGC 5 cut(s) 76, 257, 463, 489, 1108
BcgI CGANNNNNNTGC 2 cut(s) 1102, 1136
BciT130I CCWGG 1 cut(s) 1077
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 5 cut(s) 337, 373, 766, 983, 1171
BfaI CTAG 3 cut(s) 50, 648, 849
BfmI CTRYAG 2 cut(s) 279, 506
BfoI RGCGCY 1 cut(s) 479
BglII AGATCT 2 cut(s) 46, 184
BisI GCNGC 2 cut(s) 64, 1059
BlsI GCNGC 2 cut(s) 65, 1060
Bme1390I CCNGG 1 cut(s) 1077
BmeT110I CYCGRG 1 cut(s) 748
BmiI GGNNCC 4 cut(s) 241, 268, 317, 477
BmrFI CCNGG 1 cut(s) 1077
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 2 cut(s) 14, 1104
BmuI ACTGGG 1 cut(s) 678
BpiI GAAGAC 3 cut(s) 63, 150, 402
BpmI CTGGAG 1 cut(s) 1098
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 1211
BsaBI GATNNNNATC 4 cut(s) 156, 162, 168, 303
BsaHI GRCGYC 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 415, 445, 1245
Bsc4I CCNNNNNNNGG 3 cut(s) 896, 1082, 1277
Bse1I ACTGG 1 cut(s) 673
Bse21I CCTNAGG 1 cut(s) 235
Bse8I GATNNNNATC 4 cut(s) 156, 162, 168, 303
BseBI CCWGG 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 415, 445, 1245
BseGI GGATG 2 cut(s) 230, 460
BseJI GATNNNNATC 4 cut(s) 156, 162, 168, 303
BseLI CCNNNNNNNGG 3 cut(s) 896, 1082, 1277
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 673
BseRI GAGGAG 5 cut(s) 99, 102, 105, 1189, 1225
BseXI GCAGC 1 cut(s) 1045
Bsh1236I CGCG 1 cut(s) 737
BshNI GGYRCC 2 cut(s) 315, 475
BsiHKAI GWGCWC 2 cut(s) 217, 1090
BsiHKCI CYCGRG 1 cut(s) 748
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 3 cut(s) 896, 1082, 1277
BsmAI GTCTC 5 cut(s) 337, 373, 766, 983, 1171
BsmBI CGTCTC 1 cut(s) 983
BsmFI GGGAC 1 cut(s) 1175
BsmI GAATGC 1 cut(s) 916
Bso31I GGTCTC 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 217, 1090
BspACI CCGC 9 cut(s) 33, 63, 66, 72, 78, 261, 270, 464, 914
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 1 cut(s) 737
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 4 cut(s) 241, 268, 317, 477
BspPI GGATC 7 cut(s) 18, 152, 158, 164, 261, 274, 860
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 2 cut(s) 315, 475
BspTNI GGTCTC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 673
BssECI CCNNGG 3 cut(s) 415, 445, 1245
BssNI GRCGYC 1 cut(s) 476
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 9 cut(s) 244, 250, 320, 446, 510, 846, 994, 1170, 1249
Bst6I CTCTTC 3 cut(s) 76, 261, 981
BstACI GRCGYC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 235, 501, 545
BstDSI CCRYGG 3 cut(s) 415, 445, 1245
BstENI CCTNNNNNAGG 1 cut(s) 1275
BstF5I GGATG 2 cut(s) 230, 460
BstFNI CGCG 1 cut(s) 737
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstMAI GTCTC 5 cut(s) 337, 373, 766, 983, 1171
BstMWI GCNNNNNNNGC 3 cut(s) 69, 260, 269
BstNI CCWGG 1 cut(s) 1077
BstSCI CCNGG 1 cut(s) 1075
BstSFI CTRYAG 2 cut(s) 279, 506
BstUI CGCG 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 1045
BstV2I GAAGAC 3 cut(s) 63, 150, 402
BstX2I RGATCY 3 cut(s) 46, 184, 266
BstYI RGATCY 3 cut(s) 46, 184, 266
Bsu36I CCTNAGG 1 cut(s) 235
BtgI CCRYGG 3 cut(s) 415, 445, 1245
BtsCI GGATG 2 cut(s) 230, 460
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 622
CfoI GCGC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 275, 1038
CviAII CATG 4 cut(s) 623, 725, 1015, 1091
CviQI GTAC 2 cut(s) 275, 1038
DdeI CTNAG 3 cut(s) 235, 501, 545
DinI GGCGCC 1 cut(s) 477
DraI TTTAAA 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 76, 261, 981
EarI CTCTTC 3 cut(s) 76, 261, 981
EciI GGCGGA 3 cut(s) 93, 259, 453
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 643
Eco53kI GAGCTC 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 748
EcoICRI GAGCTC 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 1275
EcoRI GAATTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 1075
EcoRV GATATC 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 477
EheI GGCGCC 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 983
FaeI CATG 4 cut(s) 626, 728, 1018, 1094
FaqI GGGAC 1 cut(s) 1175
FatI CATG 4 cut(s) 622, 724, 1014, 1090
FauI CCCGC 1 cut(s) 268
FbaI TGATCA 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 64, 1059
FokI GGATG 2 cut(s) 217, 447
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 64, 1059
FspBI CTAG 3 cut(s) 50, 648, 849
GlaI GCGC 1 cut(s) 477
GluI GCNGC 2 cut(s) 64, 1059
GsuI CTGGAG 1 cut(s) 1098
HaeII RGCGCY 1 cut(s) 479
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 4 cut(s) 626, 728, 1018, 1094
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HpaII CCGG 1 cut(s) 218
HphI GGTGA 4 cut(s) 33, 913, 968, 1261
Hpy188I TCNGA 9 cut(s) 10, 106, 189, 298, 304, 309, 342, 799, 1113
Hpy99I CGWCG 8 cut(s) 110, 152, 226, 254, 369, 869, 1045, 1129
HpyCH4III ACNGT 9 cut(s) 244, 250, 320, 446, 510, 846, 994, 1170, 1249
HpyCH4IV ACGT 2 cut(s) 16, 367
HpyCH4V TGCA 1 cut(s) 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 260, 269
HpyF3I CTNAG 3 cut(s) 235, 501, 545
HpySE526I ACGT 2 cut(s) 16, 367
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 4 cut(s) 626, 728, 1018, 1094
HspAI GCGC 1 cut(s) 476
KasI GGCGCC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 625
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 2 cut(s) 220, 892
Lsp1109I GCAGC 1 cut(s) 1045
LweI GCATC 2 cut(s) 14, 1104
MaeI CTAG 3 cut(s) 50, 648, 849
MaeII ACGT 2 cut(s) 16, 367
MaeIII GTNAC 5 cut(s) 17, 244, 449, 820, 893
MflI RGATCY 3 cut(s) 46, 184, 266
MhlI GDGCHC 2 cut(s) 217, 1090
MluCI AATT 6 cut(s) 190, 288, 675, 1000, 1132, 1220
Mly113I GGCGCC 1 cut(s) 476
MlyI GAGTC 1 cut(s) 1117
MmeI TCCRAC 1 cut(s) 129
MroXI GAANNNNTTC 2 cut(s) 333, 1224
MseI TTAA 9 cut(s) 495, 519, 612, 756, 918, 924, 996, 1020, 1259
MspA1I CMGCKG 2 cut(s) 35, 263
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 1077
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 1077
MvnI CGCG 1 cut(s) 737
MwoI GCNNNNNNNGC 3 cut(s) 69, 260, 269
NarI GGCGCC 1 cut(s) 476
NlaIII CATG 4 cut(s) 626, 728, 1018, 1094
NlaIV GGNNCC 4 cut(s) 241, 268, 317, 477
NmuCI GTSAC 3 cut(s) 17, 820, 893
PagI TCATGA 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 861
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 2 cut(s) 333, 1224
PfeI GAWTC 9 cut(s) 38, 101, 299, 359, 526, 661, 794, 967, 1186
PfoI TCCNGGA 1 cut(s) 1075
PkrI GCNGC 2 cut(s) 65, 1060
PleI GAGTC 1 cut(s) 1116
PluTI GGCGCC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 1116
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 1075
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 4 cut(s) 241, 268, 317, 477
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PsuI RGATCY 3 cut(s) 46, 184, 266
RsaI GTAC 2 cut(s) 276, 1039
RsaNI GTAC 2 cut(s) 275, 1038
SacI GAGCTC 1 cut(s) 217
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 9 cut(s) 495, 519, 612, 756, 918, 924, 996, 1020, 1259
SatI GCNGC 2 cut(s) 64, 1059
SchI GAGTC 1 cut(s) 1117
ScrFI CCNGG 1 cut(s) 1077
SduI GDGCHC 2 cut(s) 217, 1090
SfaNI GCATC 2 cut(s) 14, 1104
SfcI CTRYAG 2 cut(s) 279, 506
SfoI GGCGCC 1 cut(s) 477
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
Sse9I AATT 6 cut(s) 190, 288, 675, 1000, 1132, 1220
SsiI CCGC 9 cut(s) 33, 63, 66, 72, 78, 261, 270, 464, 914
SspDI GGCGCC 1 cut(s) 475
SspMI CTAG 3 cut(s) 50, 648, 849
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 1075
TaaI ACNGT 9 cut(s) 244, 250, 320, 446, 510, 846, 994, 1170, 1249
TaiI ACGT 2 cut(s) 19, 370
TaqI TCGA 6 cut(s) 405, 426, 786, 864, 1127, 1208
TasI AATT 6 cut(s) 190, 288, 675, 1000, 1132, 1220
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 9 cut(s) 38, 101, 299, 359, 526, 661, 794, 967, 1186
Tru1I TTAA 9 cut(s) 495, 519, 612, 756, 918, 924, 996, 1020, 1259
Tru9I TTAA 9 cut(s) 495, 519, 612, 756, 918, 924, 996, 1020, 1259
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 3 cut(s) 17, 820, 893
TseI GCWGC 1 cut(s) 1058
Tsp45I GTSAC 3 cut(s) 17, 820, 893
TspDTI ATGAA 4 cut(s) 326, 501, 1046, 1145
TspGWI ACGGA 3 cut(s) 186, 404, 879
TspRI CASTG 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 1275
XapI RAATTY 2 cut(s) 190, 1132
XbaI TCTAGA 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 333, 1224
XspI CTAG 3 cut(s) 50, 648, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.