Rh6BG252100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
46330552 .. 46351994
21443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG252100.1

Sequence Viewer

Length: 219 bp
ATGAATTTGATCCACCAACCATATGAGAACCAGCTTGTCGGAATGATAGAGAAAATAAAGAAAATCAAAGTGAGAGAAAAGAGAAGAGGAGAGACATGGTTAAATAAAAGGCTTGGAACATTGGTTGGCGGCAAGCGGCAAGTGGTAAGTTGGCATCGTCCCGCTGCCGTGGCTCCATTGGAGGTCCCTCACCCGGAGGGGAGGAAGCCTCTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.31

Weight (kDa)

10.75

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04930 AT3G04930 AT5G28040 AT5G28040
fragaria_vesca FvH4_6g03660
malus_domestica MD04G1219700.v1.1 MD12G1236500.v1.1
prunus_persica Prupe.6G338800_v2.0.a1 Prupe.6G338800_v2.0.a1
pyrus_communis pycom04g19470
rosa_samantha Rh6BG252100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 129, 136, 162
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 86
BisI GCNGC 3 cut(s) 130, 137, 165
BlsI GCNGC 3 cut(s) 131, 138, 166
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 174, 186
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 163
BplI GAGNNNNNCTC 1 cut(s) 193
BpuMI CCSGG 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 2 cut(s) 144, 170
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 144, 170
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 3 cut(s) 129, 136, 162
BspLI GGNNCC 2 cut(s) 174, 186
BspPI GGATC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 168
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 184
CviAII CATG 1 cut(s) 96
CviJI RGCY 4 cut(s) 34, 112, 173, 208
CviKI_1 RGCY 4 cut(s) 34, 112, 173, 208
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 184
FaeI CATG 1 cut(s) 99
FaiI YATR 4 cut(s) 22, 24, 97, 217
FaqI GGGAC 2 cut(s) 144, 170
FatI CATG 1 cut(s) 95
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 130, 137, 165
Fsp4HI GCNGC 3 cut(s) 130, 137, 165
GluI GCNGC 3 cut(s) 130, 137, 165
HapII CCGG 1 cut(s) 194
Hin1II CATG 1 cut(s) 99
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 2 cut(s) 44, 207
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 163
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 96
MluCI AATT 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 6 cut(s) 80, 175, 190, 195, 198, 219
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 22
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 174, 186
PkrI GCNGC 3 cut(s) 131, 138, 166
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 174, 186
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 130, 137, 165
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 194
SetI ASST 2 cut(s) 36, 186
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 4
SsiI CCGC 3 cut(s) 129, 136, 162
StyD4I CCNGG 1 cut(s) 192
TasI AATT 1 cut(s) 4
TauI GCSGC 2 cut(s) 132, 139
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 184
XapI RAATTY 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.