FvH4_6g03660

Mediator-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017895
Physical Location & Seq
Reverse (-)
1995933 .. 1997231
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03660.t1

Sequence Viewer

Length: 1299 bp
ATGACCCCCGAACAAGACGACGCCGTTCTCCCCGAGGCCGGCGGGGACCTCTCCTCCTCCTCGCAAGACGACGAGGAAGAAGACGACGTCGTTGACGAGGACGACGATGACGACGTCGACGACGACGATGACGTCATCAACTCCGCCTCCCCTTCCTCCACCTCCAATTCCGCTCTCCCCGTCGCCATCGCCACCCCCACCGCCACCGCTCCTCCCGCCGTCACCGTCGCCCTTCCCGCTCCGCCGTTGACGAGCGCGGCGGCGGCGACGGCGGTGGTGGTTCCGGAGGGGCTGTTGGATCCGAAGCGGCCGCGGACGATTCATTACGACCCGGTTTTGCTTCCCGCCGCGCCGGAGGAGAAGAAGCCGGTGGCGGTGGTCGACGAGAGGAGGCTGTTCCAGCGGCTGTGGACGGACGACGACGAGATCGAGTTGCTCCAGGGGTTTCTGGACTACACGACGCAGAGAGGGAACAAGGGAGGAGGAGGAGGAGGAGGCTCGCATCAAAACGACACCGCTTTGTTCTACGATCAGATCAAGTCGAAGCTCCAGCTGGAATTCAACAAGAACCAGCTGGTGGAGAAGCTGCGGCGGCTGAAGAAGAAGTACCGGAATGTTCTGAACAAAATCGCCAGCGGCAAAGAGGTCAGCTTCAAGAGCCCTCATGATCAGGCGACTTTTGAGATCTCTAGGAAGATATGGAGTAACATCGGCGGTGTAGGAGCTGGCGGCGCCGACGACAACGCTCTCGACGACGAAGACCCCAACCCTAACCCTAACAATCCCAATTTCAACCATTTCGAGGTCAAGACCGAAGACGCTCCGGCCGGATTCCAGAAGTCCACGCCGAGATCGCGGAAGCGCCAGCGGCCGCCGGCGCAGCCGAAAACGCCGAGTCTTGCCGAGCCGGTGGCGGTGCCGGTGATTAAGGAGAATCATCACAATGTGAACAATGGCGGTGTTGGTGTTGGTGGTGGGAGTAATTGCGGGAATTGTAATGTTCAGGGGATGATTGAGGAGACGGTGAAGAGTTGTATGTCGCCTCTGTTTCGGCAGTTGATGAGCAATTCGATGGGTGGAGGGCAGACTAGAGGGTTCGGAGGGCTGTCGTTGAATCCGATTCCGCTGACCTTTGGCGGGCCTTCGATAAATTTGAATTTTGGGGGTGGGGAGGCGGCGGATGAGCAGTGGAGGAAGCAGCAGATTTTGGAGTTGGAGGTGTATTCGAAGCGATTGGAGTTGGTGCAGAATCAGATAAAAGTGGCATTGGATGAGTTGAAGTCCACCGGAGGAGGCTGA

Protein Analysis

433

Amino Acids

46.34

Weight (kDa)

4.73

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 133 - 235 5.3e-31 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04930 AT3G04930 AT5G28040 AT5G28040
fragaria_vesca FvH4_6g03660
malus_domestica MD04G1219700.v1.1 MD12G1236500.v1.1
prunus_persica Prupe.6G338800_v2.0.a1 Prupe.6G338800_v2.0.a1
pyrus_communis pycom04g19470
rosa_samantha Rh6BG252100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 3 cut(s) 90, 117, 135
AccB1I GGYRCC 2 cut(s) 731, 916
AccB7I CCANNNNNTGG 1 cut(s) 577
AccBSI CCGCTC 3 cut(s) 173, 209, 239
AccI GTMKAC 2 cut(s) 117, 381
AccII CGCG 4 cut(s) 257, 313, 350, 856
AccIII TCCGGA 1 cut(s) 283
AclWI GGATC 2 cut(s) 293, 306
AcoI YGGCCR 3 cut(s) 308, 825, 869
AcsI RAATTY 3 cut(s) 557, 1150, 1156
AcuI CTGAAG 1 cut(s) 617
AcyI GRCGYC 5 cut(s) 21, 87, 114, 132, 732
AdeI CACNNNGTG 1 cut(s) 946
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 4 cut(s) 38, 577, 802, 1137
AgsI TTSAA 6 cut(s) 562, 655, 793, 1114, 1156, 1279
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 6 cut(s) 547, 553, 574, 586, 651, 725
AluI AGCT 6 cut(s) 547, 553, 574, 586, 651, 725
Alw26I GTCTC 1 cut(s) 1013
AlwI GGATC 2 cut(s) 293, 306
AlwNI CAGNNNCTG 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 5 cut(s) 36, 308, 825, 869, 1139
ApeKI GCWGC 3 cut(s) 586, 880, 1198
ApoI RAATTY 3 cut(s) 557, 1150, 1156
AspLEI GCGC 5 cut(s) 257, 352, 734, 864, 880
AspS9I GGNCC 2 cut(s) 46, 1139
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 214, 934, 1036
AsuII TTCGAA 1 cut(s) 1226
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 2 cut(s) 731, 916
BanII GRGCYC 1 cut(s) 662
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BbsI GAAGAC 3 cut(s) 87, 765, 822
BbvI GCAGC 3 cut(s) 573, 892, 1210
BccI CCATC 2 cut(s) 194, 1066
BceAI ACGGC 4 cut(s) 8, 203, 229, 285
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 1013
BfaI CTAG 2 cut(s) 690, 1089
BfoI RGCGCY 2 cut(s) 735, 865
BglII AGATCT 1 cut(s) 684
Bme1390I CCNGG 2 cut(s) 332, 440
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 46, 1139
BmiI GGNNCC 5 cut(s) 47, 282, 300, 733, 918
BmrFI CCNGG 2 cut(s) 332, 440
BmsI GCATC 1 cut(s) 511
BpiI GAAGAC 3 cut(s) 87, 765, 822
BpmI CTGGAG 2 cut(s) 422, 533
Bpu14I TTCGAA 1 cut(s) 1226
BpuMI CCSGG 1 cut(s) 332
BsaHI GRCGYC 5 cut(s) 21, 87, 114, 132, 732
BsaJI CCNNGG 3 cut(s) 33, 311, 439
BsaWI WCCGGW 3 cut(s) 283, 609, 1286
BsaXI ACNNNNNCTCC 8 cut(s) 38, 68, 131, 161, 196, 226, 278, 308
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 577, 802, 1137
Bse118I RCCGGY 5 cut(s) 38, 367, 874, 907, 919
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 33, 311, 439
BseGI GGATG 3 cut(s) 1014, 1186, 1276
BseLI CCNNNNNNNGG 4 cut(s) 38, 577, 802, 1137
BseX3I CGGCCG 3 cut(s) 308, 825, 869
BseXI GCAGC 3 cut(s) 573, 892, 1210
BsgI GTGCAG 1 cut(s) 1265
Bsh1236I CGCG 4 cut(s) 257, 313, 350, 856
Bsh1285I CGRYCG 3 cut(s) 311, 828, 872
BshFI GGCC 5 cut(s) 38, 310, 827, 871, 1141
BshNI GGYRCC 2 cut(s) 731, 916
BsiEI CGRYCG 3 cut(s) 311, 828, 872
BsiHKCI CYCGRG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 4 cut(s) 38, 577, 802, 1137
BsmAI GTCTC 1 cut(s) 1013
BsmBI CGTCTC 1 cut(s) 1013
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 5 cut(s) 38, 310, 827, 871, 1141
BsoBI CYCGRG 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 1226
Bsp1286I GDGCHC 1 cut(s) 662
Bsp13I TCCGGA 1 cut(s) 283
Bsp143I GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
BspANI GGCC 5 cut(s) 38, 310, 827, 871, 1141
BspEI TCCGGA 1 cut(s) 283
BspFNI CGCG 4 cut(s) 257, 313, 350, 856
BspHI TCATGA 1 cut(s) 664
BspLI GGNNCC 5 cut(s) 47, 282, 300, 733, 918
BspPI GGATC 2 cut(s) 293, 306
BspT104I TTCGAA 1 cut(s) 1226
BspT107I GGYRCC 2 cut(s) 731, 916
BsrBI CCGCTC 3 cut(s) 173, 209, 239
BsrFI RCCGGY 5 cut(s) 38, 367, 874, 907, 919
BssAI RCCGGY 5 cut(s) 38, 367, 874, 907, 919
BssECI CCNNGG 3 cut(s) 33, 311, 439
BssMI GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
BssNI GRCGYC 5 cut(s) 21, 87, 114, 132, 732
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 226, 1024
Bst6I CTCTTC 1 cut(s) 1022
BstACI GRCGYC 5 cut(s) 21, 87, 114, 132, 732
BstBI TTCGAA 1 cut(s) 1226
BstC8I GCNNGC 7 cut(s) 40, 500, 634, 727, 866, 876, 1139
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 3 cut(s) 1014, 1186, 1276
BstFNI CGCG 4 cut(s) 257, 313, 350, 856
BstH2I RGCGCY 2 cut(s) 735, 865
BstHHI GCGC 5 cut(s) 257, 352, 734, 864, 880
BstKTI GATC 7 cut(s) 301, 429, 532, 537, 670, 687, 854
BstMAI GTCTC 1 cut(s) 1013
BstMBI GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
BstMCI CGRYCG 3 cut(s) 311, 828, 872
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 330, 438
BstUI CGCG 4 cut(s) 257, 313, 350, 856
BstV1I GCAGC 3 cut(s) 573, 892, 1210
BstV2I GAAGAC 3 cut(s) 87, 765, 822
BstX2I RGATCY 2 cut(s) 298, 684
BstYI RGATCY 2 cut(s) 298, 684
BstZI CGGCCG 3 cut(s) 308, 825, 869
BsuRI GGCC 5 cut(s) 38, 310, 827, 871, 1141
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 1014, 1186, 1276
BtsI GCAGTG 1 cut(s) 1193
BtsIMutI CAGTG 1 cut(s) 1193
Cac8I GCNNGC 7 cut(s) 40, 500, 634, 727, 866, 876, 1139
CaiI CAGNNNCTG 1 cut(s) 406
CciI TCATGA 1 cut(s) 664
CciNI GCGGCCGC 2 cut(s) 308, 869
CfoI GCGC 5 cut(s) 257, 352, 734, 864, 880
Cfr10I RCCGGY 5 cut(s) 38, 367, 874, 907, 919
Cfr13I GGNCC 2 cut(s) 46, 1139
Cfr42I CCGCGG 1 cut(s) 314
CseI GACGC 3 cut(s) 29, 469, 827
Csp6I GTAC 1 cut(s) 607
CviAII CATG 1 cut(s) 665
CviQI GTAC 1 cut(s) 607
DinI GGCGCC 1 cut(s) 733
DpnI GATC 7 cut(s) 300, 428, 531, 536, 669, 686, 853
DpnII GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
DraIII CACNNNGTG 1 cut(s) 946
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 3 cut(s) 308, 825, 869
EagI CGGCCG 3 cut(s) 308, 825, 869
Eam1104I CTCTTC 1 cut(s) 1022
EarI CTCTTC 1 cut(s) 1022
EciI GGCGGA 3 cut(s) 133, 231, 1193
EclXI CGGCCG 3 cut(s) 308, 825, 869
Eco24I GRGCYC 1 cut(s) 662
Eco47I GGWCC 1 cut(s) 46
Eco52I CGGCCG 3 cut(s) 308, 825, 869
Eco57I CTGAAG 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 662
EgeI GGCGCC 1 cut(s) 733
EheI GGCGCC 1 cut(s) 733
Esp3I CGTCTC 1 cut(s) 1013
FaeI CATG 1 cut(s) 668
FaiI YATR 3 cut(s) 666, 700, 1037
FaqI GGGAC 1 cut(s) 59
FatI CATG 1 cut(s) 664
FauI CCCGC 6 cut(s) 35, 223, 244, 352, 980, 1130
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 2 cut(s) 117, 381
FokI GGATG 3 cut(s) 1021, 1193, 1283
FriOI GRGCYC 1 cut(s) 662
FspBI CTAG 2 cut(s) 690, 1089
GlaI GCGC 5 cut(s) 256, 351, 733, 863, 879
GsuI CTGGAG 2 cut(s) 422, 533
HaeII RGCGCY 2 cut(s) 735, 865
HaeIII GGCC 5 cut(s) 38, 310, 827, 871, 1141
HgaI GACGC 3 cut(s) 29, 469, 827
HhaI GCGC 5 cut(s) 257, 352, 734, 864, 880
Hin1I GRCGYC 5 cut(s) 21, 87, 114, 132, 732
Hin1II CATG 1 cut(s) 668
Hin6I GCGC 5 cut(s) 255, 350, 732, 862, 878
HinP1I GCGC 5 cut(s) 255, 350, 732, 862, 878
HincII GTYRAC 4 cut(s) 94, 118, 249, 382
HindII GTYRAC 4 cut(s) 94, 118, 249, 382
HinfI GANTC 7 cut(s) 319, 831, 895, 934, 1114, 1120, 1249
HphI GGTGA 3 cut(s) 214, 934, 1036
Hpy166II GTNNAC 8 cut(s) 94, 118, 249, 382, 411, 843, 949, 1284
Hpy188I TCNGA 6 cut(s) 303, 534, 621, 1100, 1119, 1254
Hpy188III TCNNGA 7 cut(s) 284, 449, 655, 665, 749, 808, 835
Hpy8I GTNNAC 8 cut(s) 94, 118, 249, 382, 411, 843, 949, 1284
HpyAV CCTTC 3 cut(s) 162, 242, 1152
HpyCH4III ACNGT 2 cut(s) 226, 1024
HpyCH4IV ACGT 3 cut(s) 87, 114, 132
HpyCH4V TGCA 1 cut(s) 1246
HpySE526I ACGT 3 cut(s) 87, 114, 132
Hsp92I GRCGYC 5 cut(s) 21, 87, 114, 132, 732
Hsp92II CATG 1 cut(s) 668
HspAI GCGC 5 cut(s) 255, 350, 732, 862, 878
KasI GGCGCC 1 cut(s) 731
Kpn2I TCCGGA 1 cut(s) 283
KroI GCCGGC 2 cut(s) 38, 874
KroNI GCCGGC 2 cut(s) 40, 876
Ksp22I TGATCA 1 cut(s) 667
KspI CCGCGG 1 cut(s) 314
Kzo9I GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
LmnI GCTCC 6 cut(s) 214, 244, 441, 552, 722, 826
Lsp1109I GCAGC 3 cut(s) 573, 892, 1210
LweI GCATC 1 cut(s) 511
MaeI CTAG 2 cut(s) 690, 1089
MaeII ACGT 3 cut(s) 87, 114, 132
MaeIII GTNAC 2 cut(s) 220, 704
MalI GATC 7 cut(s) 300, 428, 531, 536, 669, 686, 853
MbiI CCGCTC 3 cut(s) 173, 209, 239
MboI GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
MboII GAAGA 9 cut(s) 89, 92, 373, 610, 613, 706, 770, 827, 1039
MflI RGATCY 2 cut(s) 298, 684
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 8 cut(s) 166, 557, 787, 982, 991, 1066, 1150, 1156
Mly113I GGCGCC 1 cut(s) 732
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 2 cut(s) 276, 1194
MreI CGCCGGCG 1 cut(s) 874
MroI TCCGGA 1 cut(s) 283
MroNI GCCGGC 2 cut(s) 38, 874
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 1 cut(s) 942
MspA1I CMGCKG 7 cut(s) 313, 403, 553, 574, 636, 868, 1126
MspR9I CCNGG 2 cut(s) 332, 440
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 4 cut(s) 257, 313, 350, 856
NaeI GCCGGC 2 cut(s) 40, 876
NarI GGCGCC 1 cut(s) 732
NciI CCSGG 1 cut(s) 332
NdeII GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
NgoMIV GCCGGC 2 cut(s) 38, 874
NlaIII CATG 1 cut(s) 668
NlaIV GGNNCC 5 cut(s) 47, 282, 300, 733, 918
NmeAIII GCCGAG 3 cut(s) 873, 918, 928
NmuCI GTSAC 1 cut(s) 220
NotI GCGGCCGC 2 cut(s) 308, 869
NspV TTCGAA 1 cut(s) 1226
PagI TCATGA 1 cut(s) 664
PdiI GCCGGC 2 cut(s) 40, 876
PfeI GAWTC 6 cut(s) 319, 831, 934, 1114, 1120, 1249
PflFI GACNNNGTC 2 cut(s) 86, 113
PflMI CCANNNNNTGG 1 cut(s) 577
PleI GAGTC 1 cut(s) 903
PluTI GGCGCC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 903
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 5 cut(s) 47, 282, 300, 733, 918
PspPI GGNCC 2 cut(s) 46, 1139
PspPPI RGGWCCY 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 2 cut(s) 298, 684
PsyI GACNNNGTC 2 cut(s) 86, 113
PvuII CAGCTG 2 cut(s) 553, 574
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 942
SacII CCGCGG 1 cut(s) 314
SalI GTCGAC 2 cut(s) 116, 380
SaqAI TTAA 1 cut(s) 927
Sau3AI GATC 7 cut(s) 298, 426, 529, 534, 667, 684, 851
Sau96I GGNCC 2 cut(s) 46, 1139
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 2 cut(s) 332, 440
SduI GDGCHC 1 cut(s) 662
SfaNI GCATC 1 cut(s) 511
SfoI GGCGCC 1 cut(s) 733
Sfr303I CCGCGG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 1226
SgrAI CRCCGGYG 1 cut(s) 874
SgrBI CCGCGG 1 cut(s) 314
SgrDI CGTCGACG 1 cut(s) 116
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 942
Sse9I AATT 8 cut(s) 166, 557, 787, 982, 991, 1066, 1150, 1156
SspDI GGCGCC 1 cut(s) 731
SspMI CTAG 2 cut(s) 690, 1089
StyD4I CCNGG 2 cut(s) 330, 438
TaaI ACNGT 2 cut(s) 226, 1024
TaiI ACGT 3 cut(s) 90, 117, 135
TaqI TCGA 9 cut(s) 117, 381, 429, 542, 750, 801, 1070, 1145, 1226
TaqII GACCGA 1 cut(s) 827
TasI AATT 8 cut(s) 166, 557, 787, 982, 991, 1066, 1150, 1156
TfiI GAWTC 6 cut(s) 319, 831, 934, 1114, 1120, 1249
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 1 cut(s) 1193
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 586, 880, 1198
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 1193
Tth111I GACNNNGTC 2 cut(s) 86, 113
Van91I CCANNNNNTGG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 3 cut(s) 557, 1150, 1156
XmiI GTMKAC 2 cut(s) 117, 381
XspI CTAG 2 cut(s) 690, 1089
ZraI GACGTC 3 cut(s) 88, 115, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.