MD04G1219700.v1.1

Mediator-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
30126241 .. 30126468
228 bp
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UTR
Exon/CDS
Intron
MD04G1219700.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGGTGTCGCCGGGCCATCCAGAGGGTTCGGAGGGTTGGCATTCAATCCGATTCCATTGAGCTTCGGCGCGCCTTTGATGAACTTGACTTTCGGGGGCGGGGAAGTGGCGGATGACAAGTGGAGGAAGCAGCAGATTTTGGAGTTGGAGGTGTACTCGAAGCGATTGGACTTGGTTCAGAACCAGATAAAGGTTGCATTGGATGAGTTGCGGTCCAATGGCGGGTGA

Protein Analysis

76

Amino Acids

8.09

Weight (kDa)

6.13

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017895)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04930 AT3G04930 AT5G28040 AT5G28040
fragaria_vesca FvH4_6g03660
malus_domestica MD04G1219700.v1.1 MD12G1236500.v1.1
prunus_persica Prupe.6G338800_v2.0.a1 Prupe.6G338800_v2.0.a1
pyrus_communis pycom04g19470
rosa_samantha Rh6BG252100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 99, 110, 211, 222
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 3 cut(s) 23, 190, 222
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 130
AscI GGCGCGCC 1 cut(s) 69
AspLEI GCGC 2 cut(s) 71, 73
AspS9I GGNCC 2 cut(s) 14, 213
AsuC2I CCSGG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 25
BcnI CCSGG 1 cut(s) 13
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 14, 213
BmrFI CCNGG 1 cut(s) 13
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpuMI CCSGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 190, 222
BseGI GGATG 3 cut(s) 17, 118, 208
BseLI CCNNNNNNNGG 3 cut(s) 23, 190, 222
BsePI GCGCGC 1 cut(s) 69
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 3 cut(s) 23, 190, 222
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 16
BspACI CCGC 4 cut(s) 99, 110, 211, 222
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 71
BssHII GCGCGC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 71
BstF5I GGATG 3 cut(s) 17, 118, 208
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 2 cut(s) 71, 73
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 17, 118, 208
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 71, 73
Cfr13I GGNCC 2 cut(s) 14, 213
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 2 cut(s) 16, 63
CviKI_1 RGCY 2 cut(s) 16, 63
CviQI GTAC 1 cut(s) 154
EciI GGCGGA 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 213
FauI CCCGC 2 cut(s) 92, 215
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 3 cut(s) 4, 125, 215
Fsp4HI GCNGC 1 cut(s) 131
GlaI GCGC 2 cut(s) 70, 72
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 12
HhaI GCGC 2 cut(s) 71, 73
Hin6I GCGC 2 cut(s) 69, 71
HinP1I GCGC 2 cut(s) 69, 71
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 32, 51, 180
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 197
HspAI GCGC 2 cut(s) 69, 71
LpnPI CCDG 3 cut(s) 25, 34, 197
Lsp1109I GCAGC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 17, 26, 117, 142
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 41
MvnI CGCG 1 cut(s) 71
NciI CCSGG 1 cut(s) 13
PalAI GGCGCGCC 1 cut(s) 69
PauI GCGCGC 1 cut(s) 69
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 14, 213
PteI GCGCGC 1 cut(s) 69
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 1 cut(s) 131
Sau96I GGNCC 2 cut(s) 14, 213
ScrFI CCNGG 1 cut(s) 13
SetI ASST 3 cut(s) 65, 153, 195
SgsI GGCGCGCC 1 cut(s) 69
SinI GGWCC 1 cut(s) 213
SsiI CCGC 4 cut(s) 99, 110, 211, 222
StyD4I CCNGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 158
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 52
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.