AT5G35740

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017090
Physical Location & Seq
Reverse (-)
13910312 .. 13911225
914 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G35740.1

Sequence Viewer

Length: 360 bp
ATGTCAACTTTCTTGATAAGGATACTTCTTCCTTTGCTTATCATAGCAATGACTCTTCCTCGACGTTCAGAGGCAGAGTCGGAACAATGGTGCATAGCGGATGAACAAACGCCAGACGATGAGTTGCAAGCAGCCTTAGACTGGGCTTGCGGAAAAGGTGGAGCAGACTGCAGCAAAATGCAGCAGGAAAACCAGCCTTGCTTCTTGCCTAACACAATCAGAGATCATGCCTCCTTTGCTTTCAACAGTTACTACCAAACTTATAAAAACAAAGGTGGTTCTTGTTACTTCAAAGGAGCTGCCATGATCACTGAGCTTGACCCCAGCCATGGTTCTTGCCAGTATGAGTATAACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
X8

Protein Analysis

119

Amino Acids

13.4

Weight (kDa)

4.72

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 29 - 102 6.1e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35740
fragaria_vesca FvH4_6g41190
malus_domestica MD09G1121800.v1.1
prunus_persica Prupe.3G201800_v2.0.a1
pyrus_communis pycom09g04620
rosa_chinensis RchiOBHm_Chr2g0156751
rosa_laevigata RLG00000020937
rosa_multiflora Rmu_sc0008149.1_g000015
rosa_roxburghii Rroxscaffold_2G00092760
rosa_rugosa Rorug02G0456100
rosa_samantha Rh2AG521400 Rh2CG506300
rosa_wichuraiana Rw2G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AciI CCGC 2 cut(s) 98, 150
AfiI CCNNNNNNNGG 2 cut(s) 141, 329
AgsI TTSAA 2 cut(s) 244, 292
AluBI AGCT 2 cut(s) 299, 316
AluI AGCT 2 cut(s) 299, 316
ApeKI GCWGC 4 cut(s) 131, 171, 181, 299
BbvI GCAGC 4 cut(s) 143, 183, 193, 286
BciVI GTATCC 1 cut(s) 15
BclI TGATCA 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 169
BfuI GTATCC 1 cut(s) 15
BisI GCNGC 4 cut(s) 132, 172, 182, 300
BlsI GCNGC 4 cut(s) 133, 173, 183, 301
BmrI ACTGGG 1 cut(s) 151
BmuI ACTGGG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 329
Bse1I ACTGG 2 cut(s) 146, 340
Bse3DI GCAATG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 2 cut(s) 141, 329
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 146, 340
BseXI GCAGC 4 cut(s) 143, 183, 193, 286
BseYI CCCAGC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 141, 329
Bsp143I GATC 2 cut(s) 223, 306
Bsp19I CCATGG 1 cut(s) 328
BspACI CCGC 2 cut(s) 98, 150
BspCNI CTCAG 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 54
BsrI ACTGG 2 cut(s) 146, 340
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 2 cut(s) 223, 306
BssT1I CCWWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 129, 148
BstDEI CTNAG 2 cut(s) 136, 312
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 2 cut(s) 226, 309
BstMBI GATC 2 cut(s) 223, 306
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 143, 183, 193, 286
BsuI GTATCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 129, 148
CviAII CATG 3 cut(s) 227, 304, 329
CviJI RGCY 6 cut(s) 134, 146, 196, 299, 316, 327
CviKI_1 RGCY 6 cut(s) 134, 146, 196, 299, 316, 327
DdeI CTNAG 2 cut(s) 136, 312
DpnI GATC 2 cut(s) 225, 308
DpnII GATC 2 cut(s) 223, 306
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 230, 307, 332
FaiI YATR 8 cut(s) 44, 95, 228, 264, 305, 330, 345, 351
FatI CATG 3 cut(s) 226, 303, 328
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 132, 172, 182, 300
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 4 cut(s) 132, 172, 182, 300
GluI GCNGC 4 cut(s) 132, 172, 182, 300
GsaI CCCAGC 1 cut(s) 327
Hin1II CATG 3 cut(s) 230, 307, 332
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 52, 77
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 70, 82, 221
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 66
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 93, 127, 171, 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 136, 312
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 3 cut(s) 230, 307, 332
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 2 cut(s) 223, 306
LmnI GCTCC 2 cut(s) 161, 296
LpnPI CCDG 6 cut(s) 126, 127, 170, 206, 337, 353
Lsp1109I GCAGC 4 cut(s) 143, 183, 193, 286
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 248, 284
MalI GATC 2 cut(s) 225, 308
MboI GATC 2 cut(s) 223, 306
MboII GAAGA 2 cut(s) 20, 47
MlyI GAGTC 2 cut(s) 46, 86
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 64, 69, 241
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 236
NcoI CCATGG 1 cut(s) 328
NdeII GATC 2 cut(s) 223, 306
NlaIII CATG 3 cut(s) 230, 307, 332
PkrI GCNGC 4 cut(s) 133, 173, 183, 301
PleI GAGTC 2 cut(s) 46, 85
PpsI GAGTC 2 cut(s) 46, 85
PsiI TTATAA 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 4 cut(s) 132, 172, 182, 300
Sau3AI GATC 2 cut(s) 223, 306
SchI GAGTC 2 cut(s) 46, 86
SetI ASST 5 cut(s) 67, 160, 277, 301, 318
SfcI CTRYAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 2 cut(s) 98, 150
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 61
TscAI CASTG 1 cut(s) 316
TseI GCWGC 4 cut(s) 131, 171, 181, 299
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.