FvH4_6g41190

glucan endo-13-beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017090
Physical Location & Seq
Forward (+)
32450984 .. 32452595
1612 bp
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UTR
Exon/CDS
Intron
FvH4_6g41190.t1

Sequence Viewer

Length: 420 bp
ATGGATATATATAGGTCATCCAGGTTAAAGAATTTTAGATCTCTATCTCTCAAACACACTGCAATGTCTACCATTCTGATAAGGATAACGCTTGCTCTGCTCCTTCTCTCACTAGTTTCACTCAAATCAGTGGATGCGGATTATGAGCAATGGTGTATTGCTGATGAACAAACCCCGGACGGTGAGCTGCAGGCAGCAATAGATTGGGCTTGTGGTGCAGGAGGTGCAGATTGTAGCAAGATCCAGATGAACCAACCTTGCTTTTCCCCAAACACTCTGAAAGACCATGCTTCCTATGCCTTCAACAACTACTACCAGAAGTTCAAACATAAAGGTGCATCTTGCTACTTCAAGGGAGCTGCCATGATTACAGAACTTGATCCCAGTCATGGCCCTTGCAAGTATGAATATTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

6.87

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 50 - 122 3.7e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35740
fragaria_vesca FvH4_6g41190
malus_domestica MD09G1121800.v1.1
prunus_persica Prupe.3G201800_v2.0.a1
pyrus_communis pycom09g04620
rosa_chinensis RchiOBHm_Chr2g0156751
rosa_laevigata RLG00000020937
rosa_multiflora Rmu_sc0008149.1_g000015
rosa_roxburghii Rroxscaffold_2G00092760
rosa_rugosa Rorug02G0456100
rosa_samantha Rh2AG521400 Rh2CG506300
rosa_wichuraiana Rw2G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 235, 374
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 3 cut(s) 304, 325, 352
AhlI ACTAGT 1 cut(s) 112
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 2 cut(s) 187, 359
AluI AGCT 2 cut(s) 187, 359
AlwI GGATC 2 cut(s) 235, 374
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 187, 194, 359
ApoI RAATTY 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 411
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 194
BbvI GCAGC 3 cut(s) 174, 206, 346
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 112
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 188
BglII AGATCT 1 cut(s) 38
BisI GCNGC 3 cut(s) 188, 195, 360
BlsI GCNGC 3 cut(s) 189, 196, 361
Bme1390I CCNGG 2 cut(s) 22, 176
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 22, 176
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 2 cut(s) 124, 347
BmuI ACTGGG 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 2 cut(s) 69, 155
Bse8I GATNNNNATC 1 cut(s) 43
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 17, 139
BseJI GATNNNNATC 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMI GCAATG 2 cut(s) 69, 155
BseNI ACTGG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 174, 206, 346
BsgI GTGCAG 2 cut(s) 237, 246
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 389
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 3 cut(s) 38, 240, 379
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 192
BspPI GGATC 2 cut(s) 235, 374
BsrDI GCAATG 2 cut(s) 69, 155
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 3 cut(s) 38, 240, 379
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 93, 192
BstF5I GGATG 2 cut(s) 17, 139
BstKTI GATC 3 cut(s) 41, 243, 382
BstMBI GATC 3 cut(s) 38, 240, 379
BstMWI GCNNNNNNNGC 4 cut(s) 97, 215, 224, 296
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 20, 174
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 174, 206, 346
BstX2I RGATCY 2 cut(s) 38, 240
BstYI RGATCY 2 cut(s) 38, 240
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 17, 139
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 135
Cac8I GCNNGC 2 cut(s) 93, 192
Cfr13I GGNCC 1 cut(s) 392
CviAII CATG 3 cut(s) 287, 364, 389
CviJI RGCY 4 cut(s) 187, 209, 359, 393
CviKI_1 RGCY 4 cut(s) 187, 209, 359, 393
DpnI GATC 3 cut(s) 40, 242, 381
DpnII GATC 3 cut(s) 38, 240, 379
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 290, 367, 392
FatI CATG 3 cut(s) 286, 363, 388
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 3 cut(s) 188, 195, 360
FokI GGATG 2 cut(s) 4, 146
Fsp4HI GCNGC 3 cut(s) 188, 195, 360
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 188, 195, 360
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 176
Hin1II CATG 3 cut(s) 290, 367, 392
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 78, 279
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 69
HpyAV CCTTC 2 cut(s) 113, 310
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 6 cut(s) 62, 190, 218, 227, 338, 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 215, 224, 296
Hsp92II CATG 3 cut(s) 290, 367, 392
Kzo9I GATC 3 cut(s) 38, 240, 379
LmnI GCTCC 2 cut(s) 105, 356
LpnPI CCDG 8 cut(s) 7, 34, 176, 189, 204, 257, 329, 397
Lsp1109I GCAGC 3 cut(s) 174, 206, 346
LweI GCATC 2 cut(s) 124, 347
MaeI CTAG 1 cut(s) 113
MalI GATC 3 cut(s) 40, 242, 381
MboI GATC 3 cut(s) 38, 240, 379
MflI RGATCY 2 cut(s) 38, 240
MluCI AATT 1 cut(s) 31
MnlI CCTC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 2 cut(s) 62, 333
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 22, 176
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 4 cut(s) 97, 215, 224, 296
NciI CCSGG 1 cut(s) 176
NdeII GATC 3 cut(s) 38, 240, 379
NlaIII CATG 3 cut(s) 290, 367, 392
PdmI GAANNNNTTC 1 cut(s) 411
PkrI GCNGC 3 cut(s) 189, 196, 361
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 392
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 2 cut(s) 38, 240
RseI CAYNNNNRTG 2 cut(s) 62, 333
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 3 cut(s) 188, 195, 360
Sau3AI GATC 3 cut(s) 38, 240, 379
Sau96I GGNCC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 22, 176
SetI ASST 7 cut(s) 17, 26, 189, 226, 259, 337, 361
SfaNI GCATC 2 cut(s) 124, 347
SfcI CTRYAG 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 62, 333
SpeI ACTAGT 1 cut(s) 112
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 137
SspI AATATT 1 cut(s) 410
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 20, 174
TaaI ACNGT 1 cut(s) 182
TasI AATT 1 cut(s) 31
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 2 cut(s) 64, 135
TseI GCWGC 3 cut(s) 187, 194, 359
TspDTI ATGAA 3 cut(s) 180, 263, 420
TspRI CASTG 2 cut(s) 64, 135
XapI RAATTY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 68
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.