RLG00000020937

glucan endo-13-beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017090
Physical Location & Seq
Forward (+)
70351510 .. 70352826
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020937

Sequence Viewer

Length: 360 bp
ATGTGTACCATGCTGATAAGGACAACACTTGCTCTGCTCTTTCTCTCACTAGTTCCACTCAAATCAGTGGATGCGGATTATGAGCAATGGTGTATTGCTGATGAACAAACCCCGGACGATGAGTTGCAGGCGGCAATAGATTGGGCTTGTGGTGGAGGTGGAGGTGCAGATTGTAGCAAGATTCAGATGAACAAACCTTGCTTTTTTCCAAACACTCTGAAAGACCATGCTTCCTATGCCTTCAACAACTACTTCCAGAAGTTCAAACACAAAGGTGGATCTTGCTACTTCAAGGGAGCTGCCATGATTACAGAACTTGATCCTAGTCATGGCCCTTGCAAGTATGACTATTTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

120

Amino Acids

13.28

Weight (kDa)

5.16

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 29 - 102 3.9e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35740
fragaria_vesca FvH4_6g41190
malus_domestica MD09G1121800.v1.1
prunus_persica Prupe.3G201800_v2.0.a1
pyrus_communis pycom09g04620
rosa_chinensis RchiOBHm_Chr2g0156751
rosa_laevigata RLG00000020937
rosa_multiflora Rmu_sc0008149.1_g000015
rosa_roxburghii Rroxscaffold_2G00092760
rosa_rugosa Rorug02G0456100
rosa_samantha Rh2AG521400 Rh2CG506300
rosa_wichuraiana Rw2G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 74, 131
AclWI GGATC 2 cut(s) 286, 314
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 3 cut(s) 244, 265, 292
AhlI ACTAGT 1 cut(s) 49
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
AlwI GGATC 2 cut(s) 286, 314
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 113
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 324
BisI GCNGC 2 cut(s) 132, 300
BlsI GCNGC 2 cut(s) 133, 301
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 1 cut(s) 333
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 329
BsnI GGCC 1 cut(s) 333
Bsp143I GATC 2 cut(s) 278, 319
BspACI CCGC 2 cut(s) 74, 131
BspANI GGCC 1 cut(s) 333
BspPI GGATC 2 cut(s) 286, 314
BsrDI GCAATG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 278, 319
BstC8I GCNNGC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 281, 322
BstMBI GATC 2 cut(s) 278, 319
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 286
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 1 cut(s) 6
CviAII CATG 4 cut(s) 10, 227, 304, 329
CviJI RGCY 3 cut(s) 146, 299, 333
CviKI_1 RGCY 3 cut(s) 146, 299, 333
CviQI GTAC 1 cut(s) 6
DpnI GATC 2 cut(s) 280, 321
DpnII GATC 2 cut(s) 278, 319
FaeI CATG 4 cut(s) 13, 230, 307, 332
FaiI YATR 7 cut(s) 11, 81, 228, 237, 305, 330, 345
FatI CATG 4 cut(s) 9, 226, 303, 328
Fnu4HI GCNGC 2 cut(s) 132, 300
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 132, 300
FspBI CTAG 2 cut(s) 50, 324
GluI GCNGC 2 cut(s) 132, 300
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 113
Hin1II CATG 4 cut(s) 13, 230, 307, 332
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 186, 219
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 127, 167, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
Hsp92II CATG 4 cut(s) 13, 230, 307, 332
Kzo9I GATC 2 cut(s) 278, 319
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 3 cut(s) 113, 126, 269
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 50, 324
MalI GATC 2 cut(s) 280, 321
MboI GATC 2 cut(s) 278, 319
MflI RGATCY 1 cut(s) 278
MnlI CCTC 2 cut(s) 149, 155
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 278, 319
NlaIII CATG 4 cut(s) 13, 230, 307, 332
OliI CACNNNNGTG 1 cut(s) 273
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 2 cut(s) 133, 301
PspPI GGNCC 1 cut(s) 332
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 2 cut(s) 132, 300
Sau3AI GATC 2 cut(s) 278, 319
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 160, 166, 199, 277, 301
SfaNI GCATC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 273
SpeI ACTAGT 1 cut(s) 49
SsiI CCGC 2 cut(s) 74, 131
SspMI CTAG 2 cut(s) 50, 324
StyD4I CCNGG 1 cut(s) 111
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 2 cut(s) 117, 203
TspRI CASTG 1 cut(s) 72
XspI CTAG 2 cut(s) 50, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.