AT5G37000

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013819
Physical Location & Seq
Forward (+)
14617877 .. 14620549
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37000.1

Sequence Viewer

Length: 1665 bp
ATGAGAATCATTACGAGATTTCATCATTCCGACATCAGGAGATTGTTGTTGGGAATCATTGTTATAGCTGGTTTTGTTGTTCTGCTTGTTCAGTGTTTTGGTATTCCCTGTCGGAATTCTTTTTGCTTGTCTCCAATTAAGGTTTCAGTGATTGAGTTAACTAACTCCAATGTCACTCAAGTTTCTGTGATGAACTACACAAATCTTTCTGATGATGATGATGAGGAACTTGAAAATAAAAAGGAGGATCTTGATAGCGAAAATGATGTGGTGATTAGTAAGGAGAAGGTAGAGATGAATGTATCTTTTATTGCTATAGGAAATATATCTTTAAGGAATCCTAAAATGGTGGTTGTTAGCTCAGAGTCAGAGTCAGATCCAAATTCGGTTATGATTAGGGTTAAAGATAGTAGAAAGGGTAATGTTTTATCTCTGAGGAGGCACAAGCAAGGGAGTGCGATTTCGATATCTCAGATGAACTCATTGCTGATCCAGAGTCTTTCTTCTTTTAAATCTCCTAAGCCTCGGTGGTCATCTGCTAGAGACTCTGAAATGCTCTCTGCGAGATCCGAGATTGAGAAAGTCTCTCTTGTTCATGATTTTCTTGGACTTAATCCTTTGGTTTATCGAAATATCTCCAAGTTTCTAAGGAGTTATGACTTGATGGAGAGGAAACTCAAGATTTATGTGTACAAGGAAGGAGGGAAACCAATATTCCACACGCCGATGCCTCGAGGAATATACGCTTCAGAAGGTTGGTTTATGAAACTCATGGAAAGCAACAAGAAGTTTGTAGTAAAAGACCCCAGGAAGGCTCATTTGTTCTACATACCCATCAGCATAAAAGCTCTTAGGTCCTCTCTGGGACTGGATTTTCAGACACCGAAGAGTCTTGCAGACCATTTGAAAGAATATGTCGATCTGATAGCAGGAAAGTATAAGTTCTGGAACCGAACTGGTGGAGCTGATCATTTTCTTGTTGCTTGTCATGATTGGGGCAACAAACTGACAACAAAAACCATGAAGAACAGTGTTAGATCACTTTGTAACTCAAATGTTGCCCAAGGCTTCAGAATTGGGACCGATACTGCTTTACCGGTAACATATATACGCTCTTCCGAGGCCCCTCTTGAGTATCTCGGTGGAAAAACTTCGTCCGAAAGGAAGATTCTTGCATTCTTTGCTGGCAGCATGCACGGATATCTCCGTCCGATACTAGTGAAGCTTTGGGAGAATAAAGAACCTGACATGAAGATTTTTGGTCCAATGCCTCGTGACCCTAAAAGCAAGAAACAATACCGAGAATATATGAAGAGCAGCAGGTACTGCATATGTGCGAGGGGTTATGAAGTCCACACTCCTAGGGTTGTCGAGGCTATCATTAATGAATGTGTTCCGGTTATCATTGCTGACAACTACGTGCCTCCCTTTTTCGAGGTTTTGAACTGGGAGGAATTTGCTGTGTTTGTTGAGGAGAAAGATATACCGAATCTGAGAAACATTCTGCTATCCATACCCGAAGATAGATATATTGGCATGCAAGCAAGGGTTAAAGCGGTGCAGCAACATTTCCTGTGGCACAAGAAACCGGTGAAGTTCGATCAATTCCATATGATTTTGCATTCTATTTGGTACAGCCGAGTTCATAGAATTAAAACCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

554

Amino Acids

63.74

Weight (kDa)

9.48

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 223 - 503 3.1e-63 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 732
Acc36I ACCTGC 1 cut(s) 1311
AciI CCGC 1 cut(s) 1556
AclWI GGATC 4 cut(s) 255, 371, 484, 561
AcsI RAATTY 3 cut(s) 115, 382, 1454
AcuI CTGAAG 2 cut(s) 732, 1054
AfaI GTAC 3 cut(s) 692, 1325, 1634
AfiI CCNNNNNNNGG 2 cut(s) 36, 811
AgeI ACCGGT 2 cut(s) 1096, 1588
AgsI TTSAA 3 cut(s) 233, 907, 1444
AhlI ACTAGT 1 cut(s) 1216
AjnI CCWGG 2 cut(s) 806, 1658
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 5 cut(s) 68, 360, 848, 965, 1225
AluI AGCT 5 cut(s) 68, 360, 848, 965, 1225
Alw26I GTCTC 3 cut(s) 135, 537, 589
AlwI GGATC 4 cut(s) 255, 371, 484, 561
AlwNI CAGNNNCTG 1 cut(s) 1326
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 1 cut(s) 1122
ApeKI GCWGC 3 cut(s) 1188, 1317, 1561
ApoI RAATTY 3 cut(s) 115, 382, 1454
AseI ATTAAT 1 cut(s) 1383
AsiGI ACCGGT 2 cut(s) 1096, 1588
Asp700I GAANNNNTTC 2 cut(s) 1150, 1392
AspA2I CCTAGG 1 cut(s) 1361
AspS9I GGNCC 4 cut(s) 855, 1080, 1123, 1262
AsuHPI GGTGA 2 cut(s) 283, 1603
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 3 cut(s) 855, 1080, 1262
AvrII CCTAGG 1 cut(s) 1361
BauI CACGAG 1 cut(s) 1272
BbvI GCAGC 3 cut(s) 1200, 1329, 1573
BccI CCATC 2 cut(s) 658, 842
BciT130I CCWGG 2 cut(s) 808, 1660
BclI TGATCA 1 cut(s) 967
BcoDI GTCTC 3 cut(s) 135, 537, 589
BcuI ACTAGT 1 cut(s) 1216
BfaI CTAG 3 cut(s) 540, 1217, 1362
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 1311
BisI GCNGC 3 cut(s) 1189, 1318, 1562
BlnI CCTAGG 1 cut(s) 1361
BlsI GCNGC 3 cut(s) 1190, 1319, 1563
Bme1390I CCNGG 2 cut(s) 808, 1660
Bme18I GGWCC 3 cut(s) 855, 1080, 1262
BmeT110I CYCGRG 1 cut(s) 732
BmgT120I GGNCC 4 cut(s) 855, 1080, 1123, 1262
BmiI GGNNCC 3 cut(s) 950, 1081, 1125
BmrFI CCNGG 2 cut(s) 808, 1660
BmrI ACTGGG 1 cut(s) 1456
BmsI GCATC 1 cut(s) 717
BmuI ACTGGG 1 cut(s) 1456
BplI GAGNNNNNCTC 2 cut(s) 569, 601
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 3 cut(s) 162, 662, 1151
BsaAI YACGTR 1 cut(s) 1420
BsaJI CCNNGG 5 cut(s) 524, 806, 1063, 1119, 1361
BsaWI WCCGGW 3 cut(s) 1096, 1396, 1588
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 811
Bse118I RCCGGY 2 cut(s) 1096, 1588
Bse1I ACTGG 3 cut(s) 873, 961, 1451
Bse3DI GCAATG 2 cut(s) 482, 1404
BseBI CCWGG 2 cut(s) 808, 1660
BseDI CCNNGG 5 cut(s) 524, 806, 1063, 1119, 1361
BseLI CCNNNNNNNGG 2 cut(s) 36, 811
BseMI GCAATG 2 cut(s) 482, 1404
BseMII CTCAG 4 cut(s) 375, 425, 485, 1484
BseNI ACTGG 3 cut(s) 873, 961, 1451
BseRI GAGGAG 2 cut(s) 451, 1487
BseXI GCAGC 3 cut(s) 1200, 1329, 1573
BsgI GTGCAG 1 cut(s) 1580
BshFI GGCC 1 cut(s) 1124
BshTI ACCGGT 2 cut(s) 1096, 1588
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 3 cut(s) 1097, 1397, 1589
BslFI GGGAC 2 cut(s) 879, 1093
BslI CCNNNNNNNGG 2 cut(s) 36, 811
BsmAI GTCTC 3 cut(s) 135, 537, 589
BsmFI GGGAC 2 cut(s) 879, 1093
BsmI GAATGC 2 cut(s) 1175, 1621
BsnI GGCC 1 cut(s) 1124
BsoBI CYCGRG 1 cut(s) 732
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
BspACI CCGC 1 cut(s) 1556
BspANI GGCC 1 cut(s) 1124
BspCNI CTCAG 4 cut(s) 374, 426, 484, 1485
BspHI TCATGA 2 cut(s) 595, 988
BspLI GGNNCC 3 cut(s) 950, 1081, 1125
BspMI ACCTGC 1 cut(s) 1311
BspPI GGATC 4 cut(s) 255, 371, 484, 561
BspQI GCTCTTC 2 cut(s) 1120, 1307
BsrDI GCAATG 2 cut(s) 482, 1404
BsrFI RCCGGY 2 cut(s) 1096, 1588
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 3 cut(s) 873, 961, 1451
BssAI RCCGGY 2 cut(s) 1096, 1588
BssECI CCNNGG 5 cut(s) 524, 806, 1063, 1119, 1361
BssMI GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
BssSI CACGAG 1 cut(s) 1272
BssT1I CCWWGG 2 cut(s) 1063, 1361
Bst2BI CACGAG 1 cut(s) 1272
Bst2UI CCWGG 2 cut(s) 808, 1660
Bst4CI ACNGT 1 cut(s) 1031
Bst6I CTCTTC 3 cut(s) 881, 1120, 1307
BstAPI GCANNNNNTGC 2 cut(s) 1181, 1326
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 1420
BstC8I GCNNGC 4 cut(s) 1186, 1193, 1538, 1542
BstDEI CTNAG 7 cut(s) 361, 434, 471, 519, 647, 851, 1493
BstKTI GATC 8 cut(s) 250, 379, 492, 569, 922, 970, 1040, 1603
BstMAI GTCTC 3 cut(s) 135, 537, 589
BstMBI GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
BstMWI GCNNNNNNNGC 2 cut(s) 1181, 1326
BstNI CCWGG 2 cut(s) 808, 1660
BstNSI RCATGY 2 cut(s) 1195, 1540
BstSCI CCNGG 2 cut(s) 806, 1658
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 3 cut(s) 1200, 1329, 1573
BstX2I RGATCY 3 cut(s) 247, 376, 566
BstYI RGATCY 3 cut(s) 247, 376, 566
BsuRI GGCC 1 cut(s) 1124
BtsIMutI CAGTG 3 cut(s) 98, 153, 1036
BveI ACCTGC 1 cut(s) 1311
Cac8I GCNNGC 4 cut(s) 1186, 1193, 1538, 1542
CaiI CAGNNNCTG 1 cut(s) 1326
CciI TCATGA 2 cut(s) 595, 988
Cfr10I RCCGGY 2 cut(s) 1096, 1588
Cfr13I GGNCC 4 cut(s) 855, 1080, 1123, 1262
CsiI ACCWGGT 1 cut(s) 1658
Csp6I GTAC 3 cut(s) 691, 1324, 1633
CspAI ACCGGT 2 cut(s) 1096, 1588
CviAII CATG 7 cut(s) 596, 772, 989, 1021, 1192, 1249, 1537
CviQI GTAC 3 cut(s) 691, 1324, 1633
DdeI CTNAG 7 cut(s) 361, 434, 471, 519, 647, 851, 1493
DpnI GATC 8 cut(s) 249, 378, 491, 568, 921, 969, 1039, 1602
DpnII GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
DraI TTTAAA 1 cut(s) 511
Eam1104I CTCTTC 3 cut(s) 881, 1120, 1307
EarI CTCTTC 3 cut(s) 881, 1120, 1307
Eco130I CCWWGG 2 cut(s) 1063, 1361
Eco32I GATATC 2 cut(s) 468, 1202
Eco47I GGWCC 3 cut(s) 855, 1080, 1262
Eco57I CTGAAG 2 cut(s) 732, 1054
Eco88I CYCGRG 1 cut(s) 732
EcoO109I RGGNCCY 2 cut(s) 855, 1123
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 2 cut(s) 806, 1658
EcoRV GATATC 2 cut(s) 468, 1202
EcoT14I CCWWGG 2 cut(s) 1063, 1361
ErhI CCWWGG 2 cut(s) 1063, 1361
FaeI CATG 7 cut(s) 599, 775, 992, 1024, 1195, 1252, 1540
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 2 cut(s) 879, 1093
FatI CATG 7 cut(s) 595, 771, 988, 1020, 1191, 1248, 1536
FauNDI CATATG 2 cut(s) 1331, 1611
FbaI TGATCA 1 cut(s) 967
Fnu4HI GCNGC 3 cut(s) 1189, 1318, 1562
Fsp4HI GCNGC 3 cut(s) 1189, 1318, 1562
FspBI CTAG 3 cut(s) 540, 1217, 1362
GluI GCNGC 3 cut(s) 1189, 1318, 1562
HaeIII GGCC 1 cut(s) 1124
HapII CCGG 3 cut(s) 1097, 1397, 1589
Hin1II CATG 7 cut(s) 599, 775, 992, 1024, 1195, 1252, 1540
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 1223
HpaI GTTAAC 1 cut(s) 159
HpaII CCGG 3 cut(s) 1097, 1397, 1589
HphI GGTGA 2 cut(s) 283, 1603
Hpy166II GTNNAC 3 cut(s) 159, 691, 1354
Hpy188III TCNNGA 9 cut(s) 37, 251, 493, 596, 679, 946, 989, 1130, 1274
Hpy8I GTNNAC 3 cut(s) 159, 691, 1354
HpyAV CCTTC 4 cut(s) 280, 692, 746, 805
HpyCH4III ACNGT 1 cut(s) 1031
HpyCH4IV ACGT 1 cut(s) 1419
HpyCH4V TGCA 7 cut(s) 896, 1175, 1195, 1329, 1540, 1561, 1621
HpyF10VI GCNNNNNNNGC 2 cut(s) 1181, 1326
HpyF3I CTNAG 7 cut(s) 361, 434, 471, 519, 647, 851, 1493
HpySE526I ACGT 1 cut(s) 1419
Hsp92II CATG 7 cut(s) 599, 775, 992, 1024, 1195, 1252, 1540
Ksp22I TGATCA 1 cut(s) 967
KspAI GTTAAC 1 cut(s) 159
Kzo9I GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
LguI GCTCTTC 2 cut(s) 1120, 1307
LmnI GCTCC 1 cut(s) 962
Lsp1109I GCAGC 3 cut(s) 1200, 1329, 1573
LweI GCATC 1 cut(s) 717
MabI ACCWGGT 1 cut(s) 1658
MaeI CTAG 3 cut(s) 540, 1217, 1362
MaeII ACGT 1 cut(s) 1419
MaeIII GTNAC 4 cut(s) 172, 1046, 1099, 1274
MalI GATC 8 cut(s) 249, 378, 491, 568, 921, 969, 1039, 1602
MboI GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
MboII GAAGA 8 cut(s) 495, 898, 1036, 1107, 1177, 1264, 1324, 1532
MflI RGATCY 3 cut(s) 247, 376, 566
MluCI AATT 7 cut(s) 115, 135, 382, 1074, 1454, 1604, 1650
MlyI GAGTC 5 cut(s) 374, 380, 505, 539, 898
MmeI TCCRAC 2 cut(s) 54, 92
MroXI GAANNNNTTC 2 cut(s) 1150, 1392
MseI TTAA 9 cut(s) 138, 158, 332, 402, 510, 612, 1383, 1551, 1653
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 3 cut(s) 1097, 1397, 1589
MspR9I CCNGG 2 cut(s) 808, 1660
Mva1269I GAATGC 2 cut(s) 1175, 1621
MvaI CCWGG 2 cut(s) 808, 1660
MwoI GCNNNNNNNGC 2 cut(s) 1181, 1326
NdeI CATATG 2 cut(s) 1331, 1611
NdeII GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
NlaIII CATG 7 cut(s) 599, 775, 992, 1024, 1195, 1252, 1540
NlaIV GGNNCC 3 cut(s) 950, 1081, 1125
NmeAIII GCCGAG 1 cut(s) 1664
NmuCI GTSAC 2 cut(s) 172, 1274
NspI RCATGY 2 cut(s) 1195, 1540
PaeI GCATGC 2 cut(s) 1195, 1540
PaeR7I CTCGAG 1 cut(s) 732
PagI TCATGA 2 cut(s) 595, 988
PciSI GCTCTTC 2 cut(s) 1120, 1307
PctI GAATGC 2 cut(s) 1175, 1621
PdmI GAANNNNTTC 2 cut(s) 1150, 1392
PfeI GAWTC 5 cut(s) 6, 54, 337, 1168, 1489
PinAI ACCGGT 2 cut(s) 1096, 1588
PkrI GCNGC 3 cut(s) 1190, 1319, 1563
PleI GAGTC 5 cut(s) 373, 379, 504, 539, 897
PpsI GAGTC 5 cut(s) 373, 379, 504, 539, 897
Ppu21I YACGTR 1 cut(s) 1420
PpuMI RGGWCCY 1 cut(s) 855
PshBI ATTAAT 1 cut(s) 1383
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 2 cut(s) 806, 1658
PspGI CCWGG 2 cut(s) 806, 1658
PspN4I GGNNCC 3 cut(s) 950, 1081, 1125
PspPI GGNCC 4 cut(s) 855, 1080, 1123, 1262
PspPPI RGGWCCY 1 cut(s) 855
PspXI VCTCGAGB 1 cut(s) 732
PstNI CAGNNNCTG 1 cut(s) 1326
PsuI RGATCY 3 cut(s) 247, 376, 566
RsaI GTAC 3 cut(s) 692, 1325, 1634
RsaNI GTAC 3 cut(s) 691, 1324, 1633
RseI CAYNNNNRTG 1 cut(s) 725
SapI GCTCTTC 2 cut(s) 1120, 1307
SaqAI TTAA 9 cut(s) 138, 158, 332, 402, 510, 612, 1383, 1551, 1653
SatI GCNGC 3 cut(s) 1189, 1318, 1562
Sau3AI GATC 8 cut(s) 247, 376, 489, 566, 919, 967, 1037, 1600
Sau96I GGNCC 4 cut(s) 855, 1080, 1123, 1262
SchI GAGTC 5 cut(s) 374, 380, 505, 539, 898
ScrFI CCNGG 2 cut(s) 808, 1660
SexAI ACCWGGT 1 cut(s) 1658
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 732
SinI GGWCC 3 cut(s) 855, 1080, 1262
SlaI CTCGAG 1 cut(s) 732
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 4 cut(s) 177, 677, 732, 1130
SmoI CTYRAG 4 cut(s) 177, 677, 732, 1130
SpeI ACTAGT 1 cut(s) 1216
SphI GCATGC 2 cut(s) 1195, 1540
Sse9I AATT 7 cut(s) 115, 135, 382, 1074, 1454, 1604, 1650
SsiI CCGC 1 cut(s) 1556
SspI AATATT 1 cut(s) 714
SspMI CTAG 3 cut(s) 540, 1217, 1362
StyD4I CCNGG 2 cut(s) 806, 1658
StyI CCWWGG 2 cut(s) 1063, 1361
TaaI ACNGT 1 cut(s) 1031
TaiI ACGT 1 cut(s) 1422
TaqI TCGA 7 cut(s) 464, 628, 733, 918, 1371, 1434, 1599
TaqII GACCGA 1 cut(s) 1097
TasI AATT 7 cut(s) 115, 135, 382, 1074, 1454, 1604, 1650
TatI WGTACW 1 cut(s) 690
TfiI GAWTC 5 cut(s) 6, 54, 337, 1168, 1489
Tru1I TTAA 9 cut(s) 138, 158, 332, 402, 510, 612, 1383, 1551, 1653
Tru9I TTAA 9 cut(s) 138, 158, 332, 402, 510, 612, 1383, 1551, 1653
TscAI CASTG 3 cut(s) 98, 153, 1036
TseFI GTSAC 2 cut(s) 172, 1274
TseI GCWGC 3 cut(s) 1188, 1317, 1561
Tsp45I GTSAC 2 cut(s) 172, 1274
TspGWI ACGGA 2 cut(s) 1196, 1212
TspRI CASTG 3 cut(s) 98, 153, 1036
VpaK11BI GGWCC 3 cut(s) 855, 1080, 1262
VspI ATTAAT 1 cut(s) 1383
XapI RAATTY 3 cut(s) 115, 382, 1454
XceI RCATGY 2 cut(s) 1195, 1540
XhoI CTCGAG 1 cut(s) 732
XmaJI CCTAGG 1 cut(s) 1361
XmnI GAANNNNTTC 2 cut(s) 1150, 1392
XspI CTAG 3 cut(s) 540, 1217, 1362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.