Rorug02G0017900

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013819
Physical Location & Seq
Reverse (-)
1473781 .. 1475715
1935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0017900.1

Sequence Viewer

Length: 465 bp
ATGAGTACTACTGCATCTCTAGCAGTCTATCTTCTTCTTCTGTCCCTGCTCCTTTCTCAGGCTCAAGGGATCCGATTGGAGAAAGGATTTTTATCAGTCAAGCAACAGAACAAGAATATACATGAGGATAGTACTGTTTTAACCCCAAAAAGCGAAAACACTGCAGCTTCTGGTGTACTCGGCAAAGATTGTGGACGTGATGATCGCTGCTTATCATCAGGAAGCAGTAGAAAACTAATCACTGTGACATCTTCTACTACCACTACCAAGAATGAGAAGAATATTGTTGGTAGGAATGTTGGGCATCCGAAATTAGCTGAGTCGTCATCAGCTACTAATTCCGATAAGCACCATGAGGAGGAGAAGGAAGAGGTTGCAGCAACCGGACACCAATACCCGGACCCCATAGACATGACCGAAATGGATTATTCTCCTGCCAGGAGAAAACCTCCGATACACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

154

Amino Acids

16.75

Weight (kDa)

7.02

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 108 - 154 5.4e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 64, 77
AfaI GTAC 3 cut(s) 7, 133, 177
AfiI CCNNNNNNNGG 3 cut(s) 58, 358, 397
AjiI CACGTC 1 cut(s) 197
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 3 cut(s) 167, 317, 332
AluI AGCT 3 cut(s) 167, 317, 332
AlwI GGATC 2 cut(s) 64, 77
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 164, 207, 377
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 176, 194, 389
BcgI CGANNNNNNTGC 2 cut(s) 143, 177
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 165, 208, 378
BlsI GCNGC 3 cut(s) 166, 209, 379
BmcAI AGTACT 2 cut(s) 7, 133
Bme1390I CCNGG 2 cut(s) 398, 439
Bme18I GGWCC 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 2 cut(s) 71, 402
BmrFI CCNGG 2 cut(s) 398, 439
BmsI GCATC 2 cut(s) 23, 313
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 358, 397
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 58, 358, 397
BseMII CTCAG 2 cut(s) 71, 309
BseRI GAGGAG 2 cut(s) 371, 374
BseXI GCAGC 3 cut(s) 176, 194, 389
BsiSI CCGG 2 cut(s) 384, 398
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 58, 358, 397
BsmFI GGGAC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 69, 202
BspCNI CTCAG 2 cut(s) 70, 310
BspLI GGNNCC 2 cut(s) 71, 402
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 64, 77
BssMI GATC 2 cut(s) 69, 202
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 136, 244
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 57, 318
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 72, 205
BstMBI GATC 2 cut(s) 69, 202
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 396, 437
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 176, 194, 389
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 240
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 6, 132, 176
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 3 cut(s) 122, 353, 412
CviJI RGCY 4 cut(s) 62, 167, 317, 332
CviKI_1 RGCY 4 cut(s) 62, 167, 317, 332
CviQI GTAC 3 cut(s) 6, 132, 176
DdeI CTNAG 2 cut(s) 57, 318
DpnI GATC 2 cut(s) 71, 204
DpnII GATC 2 cut(s) 69, 202
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 125, 356, 415
FaiI YATR 5 cut(s) 119, 123, 354, 407, 413
FaqI GGGAC 1 cut(s) 28
FatI CATG 3 cut(s) 121, 352, 411
Fnu4HI GCNGC 3 cut(s) 165, 208, 378
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 3 cut(s) 165, 208, 378
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 165, 208, 378
HapII CCGG 2 cut(s) 384, 398
Hin1II CATG 3 cut(s) 125, 356, 415
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 384, 398
Hpy166II GTNNAC 2 cut(s) 176, 194
Hpy188I TCNGA 4 cut(s) 74, 309, 343, 453
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 2 cut(s) 176, 194
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 136, 244
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 14, 164, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 57, 318
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 3 cut(s) 125, 356, 415
Kzo9I GATC 2 cut(s) 69, 202
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 9 cut(s) 44, 59, 156, 204, 397, 411, 424, 447, 451
Lsp1109I GCAGC 3 cut(s) 176, 194, 389
LweI GCATC 2 cut(s) 23, 313
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 71, 204
MboI GATC 2 cut(s) 69, 202
MboII GAAGA 6 cut(s) 23, 26, 29, 243, 289, 380
MfeI CAATTG 1 cut(s) 460
MflI RGATCY 1 cut(s) 69
MluCI AATT 3 cut(s) 311, 337, 460
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 5 cut(s) 118, 349, 352, 364, 459
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 2 cut(s) 384, 398
MspR9I CCNGG 2 cut(s) 398, 439
MunI CAATTG 1 cut(s) 460
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 398
NdeII GATC 2 cut(s) 69, 202
NlaIII CATG 3 cut(s) 125, 356, 415
NlaIV GGNNCC 2 cut(s) 71, 402
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 166, 209, 379
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 71, 402
PspPI GGNCC 1 cut(s) 400
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 7, 133, 177
RsaNI GTAC 3 cut(s) 6, 132, 176
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 3 cut(s) 165, 208, 378
Sau3AI GATC 2 cut(s) 69, 202
Sau96I GGNCC 1 cut(s) 400
ScaI AGTACT 2 cut(s) 7, 133
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 398, 439
SetI ASST 6 cut(s) 169, 199, 319, 334, 375, 451
SfaNI GCATC 2 cut(s) 23, 313
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 3 cut(s) 311, 337, 460
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 396, 437
TaaI ACNGT 2 cut(s) 136, 244
TaiI ACGT 1 cut(s) 199
TaqII GACCGA 1 cut(s) 431
TasI AATT 3 cut(s) 311, 337, 460
TatI WGTACW 3 cut(s) 5, 131, 175
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 166, 247
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 3 cut(s) 164, 207, 377
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 2 cut(s) 166, 247
VpaK11BI GGWCC 1 cut(s) 400
XagI CCTNNNNNAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 2 cut(s) 7, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.