Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452025.1

Orthogroup ID

OG0013819

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1401

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 926 bp

atggagcggaagctcaaagtttatgtttatacggaaggtgaaaagcccatattccatcagcctttgatgcgggggatttatgcctcagaaggatggtttatgaaactaatcgagggaaataaaagattttctgtgagggaccccagaaaagctcatttgttctatttaccctttgattcgcatatgttgaggttgaaacttaatggcactggtaagcagggtctagaaaagtatttgaagcgctatgttggagtaattgcaaaaaagtatccattttggaacagaacaggaggagcagatcattttcttgttgcttgccatgactgggcccccaagatcacaagcaagaacatggggagttgtatcagatctctttgcaatgccaatgttgctagagacttcaaaattggcaaggacaccagtctacctgttacatatatacgttccgtggaggatcctctggcagatcttggaggaaaacctgcttcagaaagatctattttggccttctttgccgggggcatgcacggctatctccgaccaattctgctacactactgggaaaacaaagagccagacatgaaaatctttggcccaatgccacgagatattgaaagcaaaagactttacagagaatatatgaagagcagtaagtactgcatctgtgccaggggttatgaggtacatacgcctcgaatagttgaggccatattccatgagtgtgtgccagtcatcatatcagataactatgtgcctcctttcttcgaggtattcaactgggaggcattttcggtttttatacaagaaaaggatatccctaacttgagaaacattctgctttctatcccggatgagaagtacctgatgatgaaatcggaagtaaagatggtgcaacagcatttcttttggcacaagaaacctgtcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

308

Amino Acids

36.03

Weight (kDa)

9.39

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37000
fragaria_vesca	FvH4_1g05790 FvH4_1g05790
malus_domestica	MD02G1059600.v1.1
prunus_persica	Prupe.7G223500_v2.0.a1 Prupe.7G223500_v2.0.a1 Prupe.7G223500_v2.0.a1 Prupe.7G223500_v2.0.a1 Prupe.7G223500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0091441
rosa_multiflora	Rmu_co8452025.1_g000001 Rmu_ssc0000333.1_g000007
rosa_roxburghii	Rroxscaffold_2G00150080
rosa_rugosa	Rorug02G0017900
rosa_samantha	Rh2AG062800 Rh2BG062200
rosa_wichuraiana	Rw2G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccBSI	CCGCTC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	2 cut(s)	7, 70
AclWI	GGATC	2 cut(s)	449, 462
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	3 cut(s)	656, 684, 860
AfeI	AGCGCT	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	5 cut(s)	196, 238, 403, 614, 775
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	2 cut(s)	13, 152
AluI	AGCT	2 cut(s)	13, 152
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	449, 462
Aor51HI	AGCGCT	1 cut(s)	242
AoxI	GGCC	4 cut(s)	327, 504, 592, 705
ApaI	GGGCCC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	4 cut(s)	139, 327, 328, 593
AsuC2I	CCSGG	2 cut(s)	517, 848
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	331
BauI	CACGAG	1 cut(s)	603
BccI	CCATC	3 cut(s)	63, 87, 880
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	670
BciVI	GTATCC	1 cut(s)	279
BcnI	CCSGG	2 cut(s)	517, 848
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	224, 393
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	279
BglII	AGATCT	3 cut(s)	368, 466, 494
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	3 cut(s)	517, 670, 848
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	4 cut(s)	139, 327, 328, 593
BmiI	GGNNCC	5 cut(s)	140, 141, 329, 330, 456
BmrFI	CCNGG	3 cut(s)	517, 670, 848
BmrI	ACTGGG	3 cut(s)	334, 568, 787
BmsI	GCATC	2 cut(s)	57, 669
BmuI	ACTGGG	3 cut(s)	334, 568, 787
BoxI	GACNNNNGTC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	2 cut(s)	517, 848
BsaJI	CCNNGG	3 cut(s)	447, 516, 669
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	6 cut(s)	214, 329, 420, 563, 728, 782
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	3 cut(s)	447, 516, 669
BseGI	GGATG	2 cut(s)	98, 856
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	6 cut(s)	214, 329, 420, 563, 728, 782
BseRI	GAGGAG	1 cut(s)	306
BseSI	GKGCMC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	329, 506, 594, 707
BsiSI	CCGG	2 cut(s)	516, 848
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	329, 506, 594, 707
Bsp120I	GGGCCC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
BspACI	CCGC	2 cut(s)	7, 70
BspANI	GGCC	4 cut(s)	329, 506, 594, 707
BspCNI	CTCAG	1 cut(s)	98
BspLI	GGNNCC	5 cut(s)	140, 141, 329, 330, 456
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	2 cut(s)	449, 462
BspQI	GCTCTTC	1 cut(s)	638
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	6 cut(s)	214, 329, 420, 563, 728, 782
BssECI	CCNNGG	3 cut(s)	447, 516, 669
BssMI	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	670
Bst6I	CTCTTC	1 cut(s)	638
BstC8I	GCNNGC	2 cut(s)	316, 524
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	98, 856
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	6 cut(s)	301, 339, 371, 457, 469, 497
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 389, 512, 528
BstNI	CCWGG	1 cut(s)	670
BstNSI	RCATGY	1 cut(s)	526
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	515, 668, 846
BstSLI	GKGCMC	1 cut(s)	331
BstX2I	RGATCY	4 cut(s)	368, 454, 466, 494
BstYI	RGATCY	4 cut(s)	368, 454, 466, 494
BsuI	GTATCC	1 cut(s)	279
BsuRI	GGCC	4 cut(s)	329, 506, 594, 707
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	98, 856
BtsIMutI	CAGTG	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	316, 524
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	139, 327, 328, 593
Csp6I	GTAC	3 cut(s)	655, 683, 859
CviAII	CATG	5 cut(s)	320, 352, 523, 580, 716
CviQI	GTAC	3 cut(s)	655, 683, 859
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	6 cut(s)	300, 338, 370, 456, 468, 496
DpnII	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
Eam1104I	CTCTTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	139
Eco47III	AGCGCT	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	471
EcoO109I	RGGNCCY	2 cut(s)	139, 328
EcoRII	CCWGG	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	814
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	5 cut(s)	323, 355, 526, 583, 719
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	319, 351, 522, 579, 715
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	183
FblI	GTMKAC	1 cut(s)	424
FokI	GGATG	2 cut(s)	105, 863
FriOI	GRGCYC	1 cut(s)	331
FspBI	CTAG	2 cut(s)	224, 393
GlaI	GCGC	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	4 cut(s)	329, 506, 594, 707
HapII	CCGG	2 cut(s)	516, 848
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	323, 355, 526, 583, 719
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	2 cut(s)	516, 848
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	6 cut(s)	88, 368, 490, 539, 742, 877
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	29, 83, 517
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	5 cut(s)	260, 378, 526, 660, 892
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 389, 512, 528
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	323, 355, 526, 583, 719
HspAI	GCGC	1 cut(s)	241
KflI	GGGWCCC	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	2 cut(s)	4, 293
LweI	GCATC	2 cut(s)	57, 669
MaeI	CTAG	2 cut(s)	224, 393
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	6 cut(s)	300, 338, 370, 456, 468, 496
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
MboII	GAAGA	2 cut(s)	655, 754
MflI	RGATCY	4 cut(s)	368, 454, 466, 494
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	3 cut(s)	255, 405, 543
MmeI	TCCRAC	2 cut(s)	229, 562
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	720
MspI	CCGG	2 cut(s)	516, 848
MspR9I	CCNGG	3 cut(s)	517, 670, 848
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	4 cut(s)	67, 389, 512, 528
NciI	CCSGG	2 cut(s)	517, 848
NdeI	CATATG	1 cut(s)	183
NdeII	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
NlaIII	CATG	5 cut(s)	323, 355, 526, 583, 719
NlaIV	GGNNCC	5 cut(s)	140, 141, 329, 330, 456
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	176
PfoI	TCCNGGA	1 cut(s)	846
PpuMI	RGGWCCY	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspN4I	GGNNCC	5 cut(s)	140, 141, 329, 330, 456
PspOMI	GGGCCC	1 cut(s)	327
PspPI	GGNCC	4 cut(s)	139, 327, 328, 593
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	4 cut(s)	368, 454, 466, 494
RsaI	GTAC	3 cut(s)	656, 684, 860
RsaNI	GTAC	3 cut(s)	655, 683, 859
RseI	CAYNNNNRTG	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	6 cut(s)	298, 336, 368, 454, 466, 494
Sau96I	GGNCC	4 cut(s)	139, 327, 328, 593
ScaI	AGTACT	1 cut(s)	656
ScrFI	CCNGG	3 cut(s)	517, 670, 848
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	57, 669
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	3 cut(s)	255, 405, 543
SsiI	CCGC	2 cut(s)	7, 70
SspMI	CTAG	2 cut(s)	224, 393
StyD4I	CCNGG	3 cut(s)	515, 668, 846
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	111, 694, 765
TasI	AATT	3 cut(s)	255, 405, 543
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	116, 596, 656, 884
TspGWI	ACGGA	2 cut(s)	47, 436
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	223
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	2 cut(s)	224, 393
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.