Rh2BG062200

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013819
Physical Location & Seq
Forward (+)
4696176 .. 4696817
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG062200.1

Sequence Viewer

Length: 642 bp
ATGGGGAGTTGTATCAGATCTCTTTGCAATGCCAATGTTGCTAGAGACTTCAAAATTGGCAAGGACACCAGTCTACCTGTTACATATATACGTTCCGTGGAGGATCCTCTGGCAGATCTTGGAGGAAAACCTGCTTCAGAAAGATCTATTTTGGCCTTCTTTGCCGGGGGCATGCACGGCTATCTCCGACCAATTCTGCTACACTACTGGGAAAACAAAGAGCCAGACATGAAAATCTTTGGCCCGATGCCACGAGATATTGAAAGCAAAAGACTTTACAGAGAATATATGAAGAGCAGCAAGTACTGCATCTGTGCCAGGGGTTATGAGGTACATACGCCTCGAATAGTTGAGGCCATATTCCATGAGTGTGTGCCAGTCATCATATCAGATAACTATGTGCCTCCTTTCTTCGAGGTATTCAACTGGGAGGCATTTTCGGTTTTTATACAAGAAAAGGATATCCCTTACTTGAGAAACATTCTGCTTTCTATCCCGGATGAGAAGTACCTGATGATGAAATCGGAAGTAAAGATGGTGCAACAGCATTTCTTTTGGCACAAGAAACCTGTCAAGTATGACTTGTTTCATATGATACTTCATTCAGTTTGGTACAATAGAATTCTTCAAATAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

213

Amino Acids

25.13

Weight (kDa)

8.85

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 8 - 163 1.4e-35 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 73
AclWI GGATC 2 cut(s) 98, 111
AcsI RAATTY 1 cut(s) 621
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 4 cut(s) 305, 333, 509, 614
AgsI TTSAA 4 cut(s) 52, 263, 424, 629
AjnI CCWGG 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 98, 111
AoxI GGCC 3 cut(s) 153, 241, 354
ApeKI GCWGC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 621
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 2 cut(s) 166, 497
BamHI GGATCC 1 cut(s) 103
BauI CACGAG 1 cut(s) 252
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 529
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 319
BcnI CCSGG 2 cut(s) 166, 497
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 139
BglII AGATCT 3 cut(s) 17, 115, 143
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 3 cut(s) 166, 319, 497
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 3 cut(s) 166, 319, 497
BmrI ACTGGG 2 cut(s) 217, 436
BmsI GCATC 2 cut(s) 237, 318
BmuI ACTGGG 2 cut(s) 217, 436
BoxI GACNNNNGTC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 2 cut(s) 166, 497
BsaJI CCNNGG 3 cut(s) 96, 165, 318
Bse1I ACTGG 4 cut(s) 69, 212, 377, 431
Bse3DI GCAATG 1 cut(s) 34
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 3 cut(s) 96, 165, 318
BseGI GGATG 1 cut(s) 505
BseMI GCAATG 1 cut(s) 34
BseNI ACTGG 4 cut(s) 69, 212, 377, 431
BseXI GCAGC 1 cut(s) 309
BshFI GGCC 3 cut(s) 155, 243, 356
BsiSI CCGG 2 cut(s) 165, 497
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 3 cut(s) 155, 243, 356
Bsp143I GATC 4 cut(s) 17, 103, 115, 143
BspANI GGCC 3 cut(s) 155, 243, 356
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 98, 111
BspQI GCTCTTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 4 cut(s) 69, 212, 377, 431
BssECI CCNNGG 3 cut(s) 96, 165, 318
BssMI GATC 4 cut(s) 17, 103, 115, 143
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 505
BstKTI GATC 4 cut(s) 20, 106, 118, 146
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 17, 103, 115, 143
BstMWI GCNNNNNNNGC 4 cut(s) 38, 161, 177, 306
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 175
BstPAI GACNNNNGTC 1 cut(s) 69
BstSCI CCNGG 3 cut(s) 164, 317, 495
BstV1I GCAGC 1 cut(s) 309
BstX2I RGATCY 4 cut(s) 17, 103, 115, 143
BstYI RGATCY 4 cut(s) 17, 103, 115, 143
BsuRI GGCC 3 cut(s) 155, 243, 356
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 505
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 4 cut(s) 304, 332, 508, 613
CviAII CATG 3 cut(s) 172, 229, 365
CviJI RGCY 5 cut(s) 155, 180, 223, 243, 356
CviKI_1 RGCY 5 cut(s) 155, 180, 223, 243, 356
CviQI GTAC 4 cut(s) 304, 332, 508, 613
DpnI GATC 4 cut(s) 19, 105, 117, 145
DpnII GATC 4 cut(s) 17, 103, 115, 143
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Eco32I GATATC 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 317
EcoRV GATATC 1 cut(s) 463
FaeI CATG 3 cut(s) 175, 232, 368
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FatI CATG 3 cut(s) 171, 228, 364
FauNDI CATATG 1 cut(s) 591
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 298
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 1 cut(s) 298
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 298
HaeIII GGCC 3 cut(s) 155, 243, 356
HapII CCGG 2 cut(s) 165, 497
Hin1II CATG 3 cut(s) 175, 232, 368
HpaII CCGG 2 cut(s) 165, 497
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 5 cut(s) 17, 139, 188, 391, 526
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 4 cut(s) 27, 175, 309, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 161, 177, 306
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 3 cut(s) 175, 232, 368
Kzo9I GATC 4 cut(s) 17, 103, 115, 143
LguI GCTCTTC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 2 cut(s) 237, 318
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 19, 105, 117, 145
MboI GATC 4 cut(s) 17, 103, 115, 143
MboII GAAGA 3 cut(s) 304, 403, 617
MflI RGATCY 4 cut(s) 17, 103, 115, 143
MluCI AATT 3 cut(s) 54, 192, 621
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 9 cut(s) 94, 116, 117, 322, 346, 351, 409, 414, 424
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 2 cut(s) 165, 497
MspR9I CCNGG 3 cut(s) 166, 319, 497
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 4 cut(s) 38, 161, 177, 306
NciI CCSGG 2 cut(s) 166, 497
NdeI CATATG 1 cut(s) 591
NdeII GATC 4 cut(s) 17, 103, 115, 143
NlaIII CATG 3 cut(s) 175, 232, 368
NlaIV GGNNCC 1 cut(s) 105
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 495
PkrI GCNGC 1 cut(s) 299
PshAI GACNNNNGTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 4 cut(s) 17, 103, 115, 143
RsaI GTAC 4 cut(s) 305, 333, 509, 614
RsaNI GTAC 4 cut(s) 304, 332, 508, 613
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 287
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 4 cut(s) 17, 103, 115, 143
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 305
ScrFI CCNGG 3 cut(s) 166, 319, 497
SetI ASST 7 cut(s) 79, 94, 133, 333, 420, 513, 571
SfaNI GCATC 2 cut(s) 237, 318
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SphI GCATGC 1 cut(s) 175
Sse9I AATT 3 cut(s) 54, 192, 621
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 164, 317, 495
TaiI ACGT 1 cut(s) 94
TaqI TCGA 2 cut(s) 343, 414
TasI AATT 3 cut(s) 54, 192, 621
TatI WGTACW 1 cut(s) 303
TseI GCWGC 1 cut(s) 297
TspDTI ATGAA 5 cut(s) 245, 305, 533, 578, 590
TspGWI ACGGA 1 cut(s) 85
XapI RAATTY 1 cut(s) 621
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.