AT5G37310

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
14772456 .. 14776257
3802 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37310.2

Sequence Viewer

Length: 1782 bp
ATGGTACTTCTTCCTTCGATGACGTCGCTTCTTCTGGTGTTCCTCTTCCTCTACGGCGTTTCTCCGGTTATCTCCGACGGCTCCGATCACCGTTACAAGGTCGGTGATGATGTTCCTCTTTACGCTAACAAAGTCGGACCGTTTCATAATCCCAGTGAAACATATCGATACTTTGATCTTCCGTTCTGTTCATCAGCTCCTGTTAAGGAGAAGAAGGAGGCTCTAGGGGAAGTTCTTAATGGAGATCGATTAGTCAGTGCACCTTACAAACTTGAGTTTTTGGGTGAGAAGAACTCTGAAGTTGCATGTAGAAAGAGGTTGAGTAGAGAAGACGTTGCTAAGTTTCGTGATGTGATTGCGAAAGATTATTACTTTCAGATGTATTATGATGACTTGCCCATTTGGGGATTCCTTGGAAAAGTTGTCAAGGAGGGAAAGACTGACCCATCTGAGTATAAATATTATCTCTTCAATCATCTGCAGTTTGAGATTTTCTATAATAAGGACCGTGTTATCGAAATTATCGTGAGGACAGACCAGAATTTCCTTGTGGACTTGACTGAGGACAAGGAAGTCCAAGTGGATTTCACATACACAGTTCGATGGAAGGAAACTGAAATTCCATTCGAGAAGAGGATGGAGAAATACTCACTGGCTTCATCAATGCCACATCACTTGGAAATCCACTGGTTCTCCATCATTAATTCATGTGTCACAGTTCTTCTCTTGACTGGTTTCCTTGCGACGATTCTCATGCGAGTCTTGAAGAATGATTTTGTCAAGTATGCACATGATGAAGAGGCAGTTGATGACCAAGAAGAGACTGGGTGGAAATTGATCCATGGTGATGTATTTAGGTTCCCCAAACACAAATCCCTGCTGGCTGCAGCCCTTGGTTCTGGCACACAATTGTTTACACTAGCTGTTTTCATCTTCATGCTTGCATTAGTCGGTGTCTTTTATCCCTACAACCGTGGAGCATTGTTTACTGCATTAGTGGTCATATATGCTCTTACTTCAGGGATTGCCGGATATACTGCTGCTTCTTTCTATTGCCAGCTAGAAGGAACTAACTGGGTTAGGAATGTTATACTGACTGGAAGCCTCTTCTGTGGACCTCTTTTGATCACGTTCTCCTTCCTTAATACTGTTGCGATTGCTTACCAAGCCACTGCAGCGTTGCCATTTGGGACAATTGTGGTTATTTTCCTTATATGGGCTCTGGTTACTTCACCATTGTTAATATTAGGAGGTATTGCTGGGAAGAACAGAAAATCCGAGTTTCAAGCTCCTTGTCGTACCACAAAATATCCAAGAGAGATCCCACCAATGCGTTGGTACCGGAGAACACTTCCGCAGATGGCTATGGCTGGTTTTTTACCGTTCAGTGCCATTTACATCGAGCTTTACTACATATTTGCCAGTGTTTGGGGTCACAGAATATACACCATCTATAGTATTCTGTCTATCGTCTTCCTTATTCTCGTTATAGTCACTGCTTTTATCACGGTTGCATTAACGTACTTCCAACTTGCTGCTGAAGACCATGAGTGGTGGTGGAGATCATTGCTATGCGGTGGATCAACGGGCTTATTCATATATGCCTACTGCTTGTATTACTACTATGCACGATCAGATATGTCAGGGTTCATGCAGACTTCCTTCTTCTTTGGCTACATGGCTTGCATCTGCTACGGATTCTTCCTCATGCTCGGGACAATCGGATTCTGTGCTTCCCTTCTCTTTGTTCGTCACATTTACCGCTCAATCAAGTGCGAGTAA

Protein Analysis

593

Amino Acids

68.08

Weight (kDa)

7.15

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 54 - 550 2.9e-179 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AatII GACGTC 1 cut(s) 26
Acc65I GGTACC 1 cut(s) 1338
AccB1I GGYRCC 1 cut(s) 1338
AccB7I CCANNNNNTGG 1 cut(s) 1428
AccBSI CCGCTC 1 cut(s) 1764
AciI CCGC 3 cut(s) 1355, 1575, 1762
AclWI GGATC 3 cut(s) 832, 1315, 1588
AcsI RAATTY 2 cut(s) 541, 618
AcuI CTGAAG 3 cut(s) 318, 1002, 1560
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 4 cut(s) 6, 1300, 1340, 1523
AfiI CCNNNNNNNGG 4 cut(s) 97, 404, 1216, 1428
AgsI TTSAA 3 cut(s) 472, 766, 1286
AloI GAACNNNNNNTCC 2 cut(s) 1259, 1291
AluBI AGCT 5 cut(s) 197, 923, 1060, 1289, 1405
AluI AGCT 5 cut(s) 197, 923, 1060, 1289, 1405
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 815
Alw44I GTGCAC 1 cut(s) 258
AlwI GGATC 3 cut(s) 832, 1315, 1588
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 1712
ApaLI GTGCAC 1 cut(s) 258
ApeKI GCWGC 5 cut(s) 884, 887, 1040, 1175, 1535
ApoI RAATTY 2 cut(s) 541, 618
AseI ATTAAT 1 cut(s) 702
Asp718I GGTACC 1 cut(s) 1338
AspS9I GGNCC 3 cut(s) 137, 505, 1115
AsuHPI GGTGA 5 cut(s) 80, 116, 296, 857, 1224
AvaI CYCGRG 1 cut(s) 1712
AvaII GGWCC 3 cut(s) 137, 505, 1115
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 1338
BanII GRGCYC 1 cut(s) 1222
BbsI GAAGAC 3 cut(s) 336, 1465, 1548
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 5 cut(s) 871, 899, 1027, 1187, 1522
BccI CCATC 6 cut(s) 454, 597, 631, 704, 1354, 1457
BceAI ACGGC 2 cut(s) 70, 94
BcgI CGANNNNNNTGC 2 cut(s) 736, 770
BclI TGATCA 1 cut(s) 1125
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 3 cut(s) 224, 920, 1061
BfmI CTRYAG 4 cut(s) 479, 885, 1173, 1453
BisI GCNGC 5 cut(s) 885, 888, 1041, 1176, 1536
BlsI GCNGC 5 cut(s) 886, 889, 1042, 1177, 1537
Bme18I GGWCC 3 cut(s) 137, 505, 1115
BmeT110I CYCGRG 1 cut(s) 1712
BmgT120I GGNCC 3 cut(s) 137, 505, 1115
BmiI GGNNCC 3 cut(s) 82, 860, 1340
BmrI ACTGGG 3 cut(s) 147, 834, 1084
BmsI GCATC 1 cut(s) 1695
BmuI ACTGGG 3 cut(s) 147, 834, 1084
BpiI GAAGAC 3 cut(s) 336, 1465, 1548
BplI GAGNNNNNCTC 4 cut(s) 278, 310, 632, 664
BpuEI CTTGAG 1 cut(s) 293
Bsa29I ATCGAT 2 cut(s) 166, 247
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 412, 841, 892, 973
BsaWI WCCGGW 2 cut(s) 64, 1341
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 404, 1216, 1428
Bse1I ACTGG 8 cut(s) 153, 657, 692, 736, 829, 1079, 1102, 1422
Bse3DI GCAATG 1 cut(s) 1565
BseCI ATCGAT 2 cut(s) 166, 247
BseDI CCNNGG 4 cut(s) 412, 841, 892, 973
BseGI GGATG 1 cut(s) 642
BseLI CCNNNNNNNGG 4 cut(s) 97, 404, 1216, 1428
BseMI GCAATG 1 cut(s) 1565
BseMII CTCAG 2 cut(s) 441, 552
BseNI ACTGG 8 cut(s) 153, 657, 692, 736, 829, 1079, 1102, 1422
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 5 cut(s) 871, 899, 1027, 1187, 1522
BseYI CCCAGC 1 cut(s) 1259
BshNI GGYRCC 1 cut(s) 1338
BshVI ATCGAT 2 cut(s) 166, 247
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 1712
BsiSI CCGG 3 cut(s) 65, 1029, 1342
BslFI GGGAC 2 cut(s) 1204, 1729
BslI CCNNNNNNNGG 4 cut(s) 97, 404, 1216, 1428
BsmAI GTCTC 1 cut(s) 815
BsmFI GGGAC 2 cut(s) 1204, 1729
BsoBI CYCGRG 1 cut(s) 1712
Bsp1286I GDGCHC 2 cut(s) 262, 1222
Bsp143I GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 3 cut(s) 1355, 1575, 1762
BspCNI CTCAG 2 cut(s) 442, 553
BspDI ATCGAT 2 cut(s) 166, 247
BspLI GGNNCC 3 cut(s) 82, 860, 1340
BspMAI CTGCAG 3 cut(s) 483, 889, 1177
BspPI GGATC 3 cut(s) 832, 1315, 1588
BspT107I GGYRCC 1 cut(s) 1338
BsrBI CCGCTC 1 cut(s) 1764
BsrDI GCAATG 1 cut(s) 1565
BsrI ACTGG 8 cut(s) 153, 657, 692, 736, 829, 1079, 1102, 1422
BssECI CCNNGG 4 cut(s) 412, 841, 892, 973
BssMI GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 3 cut(s) 412, 841, 892
Bst4CI ACNGT 9 cut(s) 92, 141, 509, 598, 718, 974, 1150, 1383, 1510
Bst6I CTCTTC 6 cut(s) 50, 473, 626, 792, 813, 1112
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 882, 942, 1058, 1684
BstDEI CTNAG 3 cut(s) 339, 450, 561
BstDSI CCRYGG 2 cut(s) 841, 973
BstF5I GGATG 1 cut(s) 642
BstKTI GATC 9 cut(s) 88, 178, 247, 840, 1128, 1323, 1565, 1583, 1634
BstMAI GTCTC 1 cut(s) 815
BstMBI GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
BstMWI GCNNNNNNNGC 2 cut(s) 1166, 1175
BstNSI RCATGY 1 cut(s) 309
BstSFI CTRYAG 4 cut(s) 479, 885, 1173, 1453
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 5 cut(s) 871, 899, 1027, 1187, 1522
BstV2I GAAGAC 3 cut(s) 336, 1465, 1548
BstX2I RGATCY 1 cut(s) 1320
BstXI CCANNNNNNTGG 1 cut(s) 1335
BstYI RGATCY 1 cut(s) 1320
Bsu15I ATCGAT 2 cut(s) 166, 247
BsuTUI ATCGAT 2 cut(s) 166, 247
BtgI CCRYGG 2 cut(s) 841, 973
BtsCI GGATG 1 cut(s) 642
BtsI GCAGTG 2 cut(s) 1170, 1494
BtsIMutI CAGTG 8 cut(s) 160, 262, 650, 685, 1170, 1393, 1429, 1494
Cac8I GCNNGC 4 cut(s) 882, 942, 1058, 1684
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 137, 505, 1115
ClaI ATCGAT 2 cut(s) 166, 247
CpoI CGGWCCG 1 cut(s) 137
Csp6I GTAC 4 cut(s) 5, 1299, 1339, 1522
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CspI CGGWCCG 1 cut(s) 137
CviQI GTAC 4 cut(s) 5, 1299, 1339, 1522
DdeI CTNAG 3 cut(s) 339, 450, 561
DpnI GATC 9 cut(s) 87, 177, 246, 839, 1127, 1322, 1564, 1582, 1633
DpnII GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
Eam1104I CTCTTC 6 cut(s) 50, 473, 626, 792, 813, 1112
EarI CTCTTC 6 cut(s) 50, 473, 626, 792, 813, 1112
Eco130I CCWWGG 3 cut(s) 412, 841, 892
Eco24I GRGCYC 1 cut(s) 1222
Eco47I GGWCC 3 cut(s) 137, 505, 1115
Eco57I CTGAAG 3 cut(s) 318, 1002, 1560
Eco88I CYCGRG 1 cut(s) 1712
EcoT14I CCWWGG 3 cut(s) 412, 841, 892
EcoT38I GRGCYC 1 cut(s) 1222
ErhI CCWWGG 3 cut(s) 412, 841, 892
FaqI GGGAC 2 cut(s) 1204, 1729
FbaI TGATCA 1 cut(s) 1125
Fnu4HI GCNGC 5 cut(s) 885, 888, 1041, 1176, 1536
FokI GGATG 1 cut(s) 649
FriOI GRGCYC 1 cut(s) 1222
Fsp4HI GCNGC 5 cut(s) 885, 888, 1041, 1176, 1536
FspBI CTAG 3 cut(s) 224, 920, 1061
GluI GCNGC 5 cut(s) 885, 888, 1041, 1176, 1536
GsaI CCCAGC 1 cut(s) 1263
HapII CCGG 3 cut(s) 65, 1029, 1342
Hin1I GRCGYC 1 cut(s) 23
HinfI GANTC 5 cut(s) 408, 748, 759, 1698, 1725
HpaII CCGG 3 cut(s) 65, 1029, 1342
HphI GGTGA 5 cut(s) 80, 116, 296, 857, 1224
Hpy166II GTNNAC 5 cut(s) 260, 553, 915, 987, 1115
Hpy188I TCNGA 9 cut(s) 76, 85, 137, 298, 378, 451, 1279, 1636, 1724
Hpy188III TCNNGA 6 cut(s) 347, 526, 628, 727, 763, 1714
Hpy8I GTNNAC 5 cut(s) 260, 553, 915, 987, 1115
Hpy99I CGWCG 3 cut(s) 28, 80, 748
HpyAV CCTTC 7 cut(s) 24, 208, 601, 1058, 1147, 1672, 1748
HpyCH4III ACNGT 9 cut(s) 92, 141, 509, 598, 718, 974, 1150, 1383, 1510
HpyCH4IV ACGT 4 cut(s) 23, 333, 1130, 1520
HpyF10VI GCNNNNNNNGC 2 cut(s) 1166, 1175
HpyF3I CTNAG 3 cut(s) 339, 450, 561
HpySE526I ACGT 4 cut(s) 23, 333, 1130, 1520
Hsp92I GRCGYC 1 cut(s) 23
KpnI GGTACC 1 cut(s) 1342
Ksp22I TGATCA 1 cut(s) 1125
Kzo9I GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
LmnI GCTCC 4 cut(s) 86, 202, 977, 1294
Lsp1109I GCAGC 5 cut(s) 871, 899, 1027, 1187, 1522
LweI GCATC 1 cut(s) 1695
MaeI CTAG 3 cut(s) 224, 920, 1061
MaeII ACGT 4 cut(s) 23, 333, 1130, 1520
MaeIII GTNAC 6 cut(s) 92, 712, 1225, 1433, 1492, 1751
MalI GATC 9 cut(s) 87, 177, 246, 839, 1127, 1322, 1564, 1582, 1633
MbiI CCGCTC 1 cut(s) 1764
MboI GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
MfeI CAATTG 2 cut(s) 908, 1194
MflI RGATCY 1 cut(s) 1320
MhlI GDGCHC 2 cut(s) 262, 1222
MluCI AATT 7 cut(s) 519, 541, 618, 703, 833, 908, 1194
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 3 cut(s) 99, 115, 1552
MseI TTAA 6 cut(s) 204, 237, 702, 1143, 1241, 1517
MslI CAYNNNNRTG 3 cut(s) 846, 935, 1570
MspI CCGG 3 cut(s) 65, 1029, 1342
MunI CAATTG 2 cut(s) 908, 1194
MwoI GCNNNNNNNGC 2 cut(s) 1166, 1175
NcoI CCATGG 1 cut(s) 841
NdeII GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
NlaIV GGNNCC 3 cut(s) 82, 860, 1340
NmuCI GTSAC 4 cut(s) 712, 1433, 1492, 1751
NspI RCATGY 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PfeI GAWTC 4 cut(s) 408, 748, 1698, 1725
PflMI CCANNNNNTGG 1 cut(s) 1428
PkrI GCNGC 5 cut(s) 886, 889, 1042, 1177, 1537
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 702
PspFI CCCAGC 1 cut(s) 1259
PspN4I GGNNCC 3 cut(s) 82, 860, 1340
PspPI GGNCC 3 cut(s) 137, 505, 1115
PstI CTGCAG 3 cut(s) 483, 889, 1177
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 1320
RsaI GTAC 4 cut(s) 6, 1300, 1340, 1523
RsaNI GTAC 4 cut(s) 5, 1299, 1339, 1522
RseI CAYNNNNRTG 3 cut(s) 846, 935, 1570
Rsr2I CGGWCCG 1 cut(s) 137
RsrII CGGWCCG 1 cut(s) 137
SaqAI TTAA 6 cut(s) 204, 237, 702, 1143, 1241, 1517
SatI GCNGC 5 cut(s) 885, 888, 1041, 1176, 1536
Sau3AI GATC 9 cut(s) 85, 175, 244, 837, 1125, 1320, 1562, 1580, 1631
Sau96I GGNCC 3 cut(s) 137, 505, 1115
SchI GAGTC 1 cut(s) 768
SduI GDGCHC 2 cut(s) 262, 1222
SfaNI GCATC 1 cut(s) 1695
SfcI CTRYAG 4 cut(s) 479, 885, 1173, 1453
SinI GGWCC 3 cut(s) 137, 505, 1115
SmiMI CAYNNNNRTG 3 cut(s) 846, 935, 1570
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 7 cut(s) 519, 541, 618, 703, 833, 908, 1194
SsiI CCGC 3 cut(s) 1355, 1575, 1762
SspI AATATT 2 cut(s) 461, 1245
SspMI CTAG 3 cut(s) 224, 920, 1061
StyI CCWWGG 3 cut(s) 412, 841, 892
TaaI ACNGT 9 cut(s) 92, 141, 509, 598, 718, 974, 1150, 1383, 1510
TaiI ACGT 4 cut(s) 26, 336, 1133, 1523
TaqI TCGA 7 cut(s) 17, 166, 247, 516, 601, 627, 1401
TasI AATT 7 cut(s) 519, 541, 618, 703, 833, 908, 1194
TfiI GAWTC 4 cut(s) 408, 748, 1698, 1725
Tru1I TTAA 6 cut(s) 204, 237, 702, 1143, 1241, 1517
Tru9I TTAA 6 cut(s) 204, 237, 702, 1143, 1241, 1517
TscAI CASTG 8 cut(s) 160, 262, 657, 692, 1177, 1393, 1429, 1501
TseFI GTSAC 4 cut(s) 712, 1433, 1492, 1751
TseI GCWGC 5 cut(s) 884, 887, 1040, 1175, 1535
Tsp45I GTSAC 4 cut(s) 712, 1433, 1492, 1751
TspDTI ATGAA 9 cut(s) 134, 180, 648, 696, 810, 919, 925, 1585, 1639
TspGWI ACGGA 2 cut(s) 171, 1710
TspRI CASTG 8 cut(s) 160, 262, 657, 692, 1177, 1393, 1429, 1501
Van91I CCANNNNNTGG 1 cut(s) 1428
VneI GTGCAC 1 cut(s) 258
VpaK11BI GGWCC 3 cut(s) 137, 505, 1115
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 2 cut(s) 541, 618
XceI RCATGY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 2 cut(s) 821, 1332
XspI CTAG 3 cut(s) 224, 920, 1061
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.