MD14G1242000.v1.1

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
32067299 .. 32070477
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1242000.v1.1.491

Sequence Viewer

Length: 1782 bp
ATGAGGAAGACCATGACTGTAGGAGTACACTGCATCATCGCTTTGCTAATTCTGTCCGGTGCGGATCTAGTCAGGTCCGACGGGTCGGATCATCGCTACAAGGAAGGAGATTTAGTCCCTCTGTATGCCAACAAGGTCGGCCCGTTTCACAATCCCAGTGAAACGTACCGCTACTTTGATCTCCCATTCTGCTCACCAGGTGCGGTGAAAGAGAAAAAGGAAGCTCTTGGTGAAGTATTAAATGGGGATCGTTTAGTCAGTGCCCCTTACAAACTTGAGTTCCTAAAGCATAAAGATACCGACGTAGCTTGCAAGACAAAACTCAAAAAGGAAGAAGTGGCCCAGTTCAGATCTGCTGTCAACAAGGACTATTACTTCCAGATGTATTATGATGACTTGCCGATTTGGGGTTTCATAGGGAAGGTTGACAAGGAAGGCAAAGACCCGAGCGAGTACAAGACCTACCTTTATAAGCACATTCATTTTGATCTCTATTATAACAAGGACCGCGTGATTGAAGTCAATGTTCGTACAGATCCAAATGCATTGGTTGACCTTACAGAGGATAAAGAAGTTGATGTTGAATTCATGTATACTGTAGAGTGGAAGGAAACAGCCACTCCTTTTGAGAAGAGGATGGATAAGTATTCTCAGTCCTCATCGTTGCCTCATCATTTGGAGATCCATTGGTTCTCAATTATAAATTCATGCGTGACAGTTCTCCTCTTGACTGGGTTTCTTGCTACAATTCTCATGCGAGTGCTTAAGAATGATTTTGTCAAATATGCCCATGATGAAGAAGCAGCTGAAGACCAGGAAGAGACTGGATGGAAATACATTCACGGCGATGTATTTAGGTTCCCCAAATACAAGTCCCTGTTTGCAGCAGCTCTTGGTTCGGGAACCCAACTTTTTACTCTTACGGTGTTCATTTTCATACTCGCGCTTGTTGGTGTGTTTTATCCATACAACCGAGGGGCTTTATTTACTGCTCTGGTAGTCATTTATGCACTCACTTCAGGAATTGCGGGCTATACTGCTACTTCATTTTATTGTCAGCTAGAGGGATCAAACTGGGTTAGGAATCTATTGCTGACGGGATGCCTCTTCTGTGGACCTCTGTTCCTTACATTCTGCTTTTTGAATACTGTTGCAATTGCTTATACGGCTACTGCTGCCCTTCCATTCGGCACGATTGTAGTTATAGTTCTGATATGGACACTTGTAACATCACCTTTACTGGTGTTAGGTGGGATTGCTGGGAAGAACAGCAAAGCTGAGTTCCAAGCCCCTGTTCGCACCACTAAATATCCGAGAGAGATTCCACCATTACCTTGGTACCGGGCAACAATCCCTCAAATGGCAATGGCCGGTTTTCTGCCCTTCAGTGCTATATACATTGAACTGTATTACATATTTGCAAGTGTATGGGGTCACAGGATTTACACCATTTACAGCATCTTGTTTATTGTGTTTATCATTCTTCTGATCGTCACTGCTTTCATTACCGTGGCATTGACATATTTCCAACTTGCTGCCGAGGACCATGAGTGGTGGTGGAGGTCTTTCCTCTGTGGTGGGTCTACTGGACTATTTATCTATACCTATTGTTTGTATTACTACTACGCACGCTCGGATATGTCGGGATTCATGCAAACATCATTCTTCTTTGGTTACATGGCATGCATCTGCTACGGTTTCTTCCTCATGCTTGGAACTGTAGGCTTCCGTGCAGCTTTGCTTTTTGTCCGTCACATATACCGGTCGATCAAGTGTGAGTAG

Protein Analysis

594

Amino Acids

67.89

Weight (kDa)

6.91

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 55 - 550 2.8e-181 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 471, 498, 701
Acc65I GGTACC 1 cut(s) 1338
AccB1I GGYRCC 1 cut(s) 1338
AccI GTMKAC 2 cut(s) 593, 1583
AccII CGCG 2 cut(s) 510, 944
AciI CCGC 5 cut(s) 62, 169, 203, 508, 1028
AclWI GGATC 6 cut(s) 72, 96, 255, 530, 676, 1075
AcoI YGGCCR 1 cut(s) 1368
AcsI RAATTY 2 cut(s) 584, 703
AcuI CTGAAG 3 cut(s) 828, 1002, 1369
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 5 cut(s) 27, 167, 455, 532, 1340
AfiI CCNNNNNNNGG 3 cut(s) 407, 562, 1360
AflII CTTAAG 1 cut(s) 764
AgeI ACCGGT 1 cut(s) 1761
AgsI TTSAA 4 cut(s) 518, 584, 1144, 1403
AjnI CCWGG 2 cut(s) 196, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 1278, 1310
AluBI AGCT 7 cut(s) 224, 308, 806, 890, 1060, 1277, 1736
AluI AGCT 7 cut(s) 224, 308, 806, 890, 1060, 1277, 1736
Alw26I GTCTC 1 cut(s) 815
AlwI GGATC 6 cut(s) 72, 96, 255, 530, 676, 1075
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 3 cut(s) 139, 339, 1368
ApeKI GCWGC 6 cut(s) 803, 884, 887, 1175, 1535, 1733
ApoI RAATTY 2 cut(s) 584, 703
AsiGI ACCGGT 1 cut(s) 1761
Asp718I GGTACC 1 cut(s) 1338
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 6 cut(s) 75, 140, 340, 505, 1115, 1543
AsuC2I CCSGG 1 cut(s) 1343
AsuHPI GGTGA 4 cut(s) 186, 217, 242, 1224
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 4 cut(s) 75, 505, 1115, 1543
BaeGI GKGCMC 1 cut(s) 265
BaeI ACNNNNGTAYC 4 cut(s) 288, 321, 1322, 1355
BanI GGYRCC 1 cut(s) 1338
BbsI GAAGAC 2 cut(s) 14, 816
BbvI GCAGC 6 cut(s) 815, 896, 899, 1162, 1522, 1745
BccI CCATC 2 cut(s) 631, 822
BceAI ACGGC 2 cut(s) 859, 1182
BciT130I CCWGG 2 cut(s) 198, 815
BcnI CCSGG 1 cut(s) 1343
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 2 cut(s) 68, 1061
BfmI CTRYAG 3 cut(s) 18, 597, 1719
BfrI CTTAAG 1 cut(s) 764
BglII AGATCT 1 cut(s) 350
BisI GCNGC 6 cut(s) 804, 885, 888, 1176, 1536, 1734
BlsI GCNGC 6 cut(s) 805, 886, 889, 1177, 1537, 1735
Bme1390I CCNGG 3 cut(s) 198, 815, 1343
Bme18I GGWCC 4 cut(s) 75, 505, 1115, 1543
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 6 cut(s) 75, 140, 340, 505, 1115, 1543
BmiI GGNNCC 3 cut(s) 860, 904, 1340
BmrFI CCNGG 3 cut(s) 198, 815, 1343
BmrI ACTGGG 4 cut(s) 150, 337, 741, 1084
BmsI GCATC 4 cut(s) 42, 1091, 1467, 1695
BmuI ACTGGG 4 cut(s) 150, 337, 741, 1084
BpiI GAAGAC 2 cut(s) 14, 816
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 1343
BsaJI CCNNGG 4 cut(s) 973, 1334, 1509, 1539
BsaWI WCCGGW 2 cut(s) 56, 1761
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 604, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 407, 562, 1360
Bse118I RCCGGY 2 cut(s) 1370, 1761
Bse1I ACTGG 7 cut(s) 156, 343, 736, 829, 1079, 1245, 1591
Bse3DI GCAATG 1 cut(s) 1371
BseBI CCWGG 2 cut(s) 198, 815
BseDI CCNNGG 4 cut(s) 973, 1334, 1509, 1539
BseGI GGATG 3 cut(s) 642, 833, 1106
BseLI CCNNNNNNNGG 3 cut(s) 407, 562, 1360
BseMI GCAATG 1 cut(s) 1371
BseMII CTCAG 2 cut(s) 665, 1269
BseNI ACTGG 7 cut(s) 156, 343, 736, 829, 1079, 1245, 1591
BseRI GAGGAG 1 cut(s) 713
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 6 cut(s) 815, 896, 899, 1162, 1522, 1745
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 1 cut(s) 1752
Bsh1236I CGCG 2 cut(s) 510, 944
Bsh1285I CGRYCG 1 cut(s) 1766
BshFI GGCC 3 cut(s) 141, 341, 1370
BshNI GGYRCC 1 cut(s) 1338
BshTI ACCGGT 1 cut(s) 1761
BsiEI CGRYCG 1 cut(s) 1766
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 4 cut(s) 57, 1342, 1371, 1762
BslFI GGGAC 2 cut(s) 101, 859
BslI CCNNNNNNNGG 3 cut(s) 407, 562, 1360
BsmAI GTCTC 1 cut(s) 815
BsmFI GGGAC 2 cut(s) 101, 859
BsnI GGCC 3 cut(s) 141, 341, 1370
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 265
BspACI CCGC 5 cut(s) 62, 169, 203, 508, 1028
BspANI GGCC 3 cut(s) 141, 341, 1370
BspCNI CTCAG 2 cut(s) 664, 1270
BspFNI CGCG 2 cut(s) 510, 944
BspLI GGNNCC 3 cut(s) 860, 904, 1340
BspPI GGATC 6 cut(s) 72, 96, 255, 530, 676, 1075
BspT107I GGYRCC 1 cut(s) 1338
BspTI CTTAAG 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 2 cut(s) 1370, 1761
BsrI ACTGG 7 cut(s) 156, 343, 736, 829, 1079, 1245, 1591
BssAI RCCGGY 2 cut(s) 1370, 1761
BssECI CCNNGG 4 cut(s) 973, 1334, 1509, 1539
BssNAI GTATAC 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 1334
Bst1107I GTATAC 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 198, 815
Bst4CI ACNGT 9 cut(s) 19, 598, 718, 925, 1150, 1407, 1510, 1697, 1720
Bst6I CTCTTC 3 cut(s) 626, 813, 1112
BstAFI CTTAAG 1 cut(s) 764
BstC8I GCNNGC 4 cut(s) 310, 1030, 1630, 1684
BstDEI CTNAG 2 cut(s) 651, 1278
BstDSI CCRYGG 1 cut(s) 1509
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 3 cut(s) 642, 833, 1106
BstFNI CGCG 2 cut(s) 510, 944
BstHHI GCGC 1 cut(s) 946
BstMAI GTCTC 1 cut(s) 815
BstMCI CGRYCG 1 cut(s) 1766
BstMWI GCNNNNNNNGC 2 cut(s) 1166, 1175
BstNI CCWGG 2 cut(s) 198, 815
BstNSI RCATGY 1 cut(s) 1686
BstSCI CCNGG 3 cut(s) 196, 813, 1341
BstSFI CTRYAG 3 cut(s) 18, 597, 1719
BstSLI GKGCMC 1 cut(s) 265
BstUI CGCG 2 cut(s) 510, 944
BstV1I GCAGC 6 cut(s) 815, 896, 899, 1162, 1522, 1745
BstV2I GAAGAC 2 cut(s) 14, 816
BstX2I RGATCY 4 cut(s) 64, 350, 535, 681
BstXI CCANNNNNNTGG 1 cut(s) 1335
BstYI RGATCY 4 cut(s) 64, 350, 535, 681
BstZ17I GTATAC 1 cut(s) 594
BsuRI GGCC 3 cut(s) 141, 341, 1370
BtgI CCRYGG 1 cut(s) 1509
BtgZI GCGATG 3 cut(s) 22, 77, 861
BtsCI GGATG 3 cut(s) 642, 833, 1106
BtsI GCAGTG 2 cut(s) 28, 1494
BtsIMutI CAGTG 5 cut(s) 28, 163, 265, 1393, 1494
Cac8I GCNNGC 4 cut(s) 310, 1030, 1630, 1684
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 2 cut(s) 1370, 1761
Cfr13I GGNCC 6 cut(s) 75, 140, 340, 505, 1115, 1543
CsiI ACCWGGT 1 cut(s) 196
Csp6I GTAC 5 cut(s) 26, 166, 454, 531, 1339
CspAI ACCGGT 1 cut(s) 1761
CspCI CAANNNNNGTGG 2 cut(s) 607, 642
CviQI GTAC 5 cut(s) 26, 166, 454, 531, 1339
DdeI CTNAG 2 cut(s) 651, 1278
DraIII CACNNNGTG 1 cut(s) 200
EaeI YGGCCR 1 cut(s) 1368
Eam1104I CTCTTC 3 cut(s) 626, 813, 1112
EarI CTCTTC 3 cut(s) 626, 813, 1112
Eco130I CCWWGG 1 cut(s) 1334
Eco47I GGWCC 4 cut(s) 75, 505, 1115, 1543
Eco57I CTGAAG 3 cut(s) 828, 1002, 1369
Eco88I CYCGRG 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 584
EcoRII CCWGG 2 cut(s) 196, 813
EcoT14I CCWWGG 1 cut(s) 1334
EcoT22I ATGCAT 2 cut(s) 547, 1688
ErhI CCWWGG 1 cut(s) 1334
FaqI GGGAC 2 cut(s) 101, 859
FauI CCCGC 1 cut(s) 1021
FblI GTMKAC 2 cut(s) 593, 1583
Fnu4HI GCNGC 6 cut(s) 804, 885, 888, 1176, 1536, 1734
FokI GGATG 3 cut(s) 649, 840, 1113
Fsp4HI GCNGC 6 cut(s) 804, 885, 888, 1176, 1536, 1734
FspBI CTAG 2 cut(s) 68, 1061
GlaI GCGC 1 cut(s) 945
GluI GCNGC 6 cut(s) 804, 885, 888, 1176, 1536, 1734
GsaI CCCAGC 1 cut(s) 1263
HaeIII GGCC 3 cut(s) 141, 341, 1370
HapII CCGG 4 cut(s) 57, 1342, 1371, 1762
HhaI GCGC 1 cut(s) 946
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 3 cut(s) 361, 427, 553
HindII GTYRAC 3 cut(s) 361, 427, 553
HinfI GANTC 3 cut(s) 1084, 1321, 1647
HpaII CCGG 4 cut(s) 57, 1342, 1371, 1762
HphI GGTGA 4 cut(s) 186, 217, 242, 1224
Hpy166II GTNNAC 7 cut(s) 28, 361, 427, 553, 594, 1115, 1584
Hpy188I TCNGA 7 cut(s) 79, 88, 350, 1212, 1314, 1488, 1636
Hpy188III TCNNGA 5 cut(s) 379, 727, 900, 1020, 1644
Hpy8I GTNNAC 7 cut(s) 28, 361, 427, 553, 594, 1115, 1584
Hpy99I CGWCG 2 cut(s) 83, 305
HpyAV CCTTC 6 cut(s) 98, 415, 428, 601, 1190, 1393
HpyCH4III ACNGT 9 cut(s) 19, 598, 718, 925, 1150, 1407, 1510, 1697, 1720
HpyCH4IV ACGT 2 cut(s) 164, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 1166, 1175
HpyF3I CTNAG 2 cut(s) 651, 1278
HpySE526I ACGT 2 cut(s) 164, 303
HspAI GCGC 1 cut(s) 944
KpnI GGTACC 1 cut(s) 1342
Lsp1109I GCAGC 6 cut(s) 815, 896, 899, 1162, 1522, 1745
LweI GCATC 4 cut(s) 42, 1091, 1467, 1695
MabI ACCWGGT 1 cut(s) 196
MaeI CTAG 2 cut(s) 68, 1061
MaeII ACGT 2 cut(s) 164, 303
MaeIII GTNAC 6 cut(s) 712, 1225, 1433, 1492, 1673, 1751
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 4 cut(s) 64, 350, 535, 681
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 7 cut(s) 48, 584, 696, 703, 747, 1023, 1155
MmeI TCCRAC 3 cut(s) 66, 102, 1552
Mph1103I ATGCAT 2 cut(s) 547, 1688
MseI TTAA 2 cut(s) 239, 765
MslI CAYNNNNRTG 3 cut(s) 758, 846, 1508
MspA1I CMGCKG 1 cut(s) 806
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 4 cut(s) 57, 1342, 1371, 1762
MspR9I CCNGG 3 cut(s) 198, 815, 1343
MunI CAATTG 1 cut(s) 1155
MvaI CCWGG 2 cut(s) 198, 815
MvnI CGCG 2 cut(s) 510, 944
MwoI GCNNNNNNNGC 2 cut(s) 1166, 1175
NciI CCSGG 1 cut(s) 1343
NlaIV GGNNCC 3 cut(s) 860, 904, 1340
NmeAIII GCCGAG 1 cut(s) 1564
NmuCI GTSAC 4 cut(s) 712, 1433, 1492, 1751
NsiI ATGCAT 2 cut(s) 547, 1688
NspI RCATGY 1 cut(s) 1686
PaeI GCATGC 1 cut(s) 1686
PfeI GAWTC 3 cut(s) 1084, 1321, 1647
PinAI ACCGGT 1 cut(s) 1761
PkrI GCNGC 6 cut(s) 805, 886, 889, 1177, 1537, 1735
PsiI TTATAA 3 cut(s) 471, 498, 701
Psp6I CCWGG 2 cut(s) 196, 813
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 2 cut(s) 196, 813
PspN4I GGNNCC 3 cut(s) 860, 904, 1340
PspPI GGNCC 6 cut(s) 75, 140, 340, 505, 1115, 1543
PsrI GAACNNNNNNTAC 2 cut(s) 1191, 1223
PsuI RGATCY 4 cut(s) 64, 350, 535, 681
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 5 cut(s) 27, 167, 455, 532, 1340
RsaNI GTAC 5 cut(s) 26, 166, 454, 531, 1339
RseI CAYNNNNRTG 3 cut(s) 758, 846, 1508
SaqAI TTAA 2 cut(s) 239, 765
SatI GCNGC 6 cut(s) 804, 885, 888, 1176, 1536, 1734
Sau96I GGNCC 6 cut(s) 75, 140, 340, 505, 1115, 1543
ScrFI CCNGG 3 cut(s) 198, 815, 1343
SduI GDGCHC 1 cut(s) 265
SexAI ACCWGGT 1 cut(s) 196
SfaNI GCATC 4 cut(s) 42, 1091, 1467, 1695
SfcI CTRYAG 3 cut(s) 18, 597, 1719
SinI GGWCC 4 cut(s) 75, 505, 1115, 1543
SmiMI CAYNNNNRTG 3 cut(s) 758, 846, 1508
SmlI CTYRAG 2 cut(s) 275, 764
SmoI CTYRAG 2 cut(s) 275, 764
SphI GCATGC 1 cut(s) 1686
Sse9I AATT 7 cut(s) 48, 584, 696, 703, 747, 1023, 1155
SsiI CCGC 5 cut(s) 62, 169, 203, 508, 1028
SspMI CTAG 2 cut(s) 68, 1061
StyD4I CCNGG 3 cut(s) 196, 813, 1341
StyI CCWWGG 1 cut(s) 1334
TaaI ACNGT 9 cut(s) 19, 598, 718, 925, 1150, 1407, 1510, 1697, 1720
TaiI ACGT 2 cut(s) 167, 306
TaqI TCGA 1 cut(s) 1766
TasI AATT 7 cut(s) 48, 584, 696, 703, 747, 1023, 1155
TatI WGTACW 2 cut(s) 25, 453
TfiI GAWTC 3 cut(s) 1084, 1321, 1647
Tru1I TTAA 2 cut(s) 239, 765
Tru9I TTAA 2 cut(s) 239, 765
TscAI CASTG 5 cut(s) 35, 163, 265, 1393, 1501
TseFI GTSAC 4 cut(s) 712, 1433, 1492, 1751
TseI GCWGC 6 cut(s) 803, 884, 887, 1175, 1535, 1733
Tsp45I GTSAC 4 cut(s) 712, 1433, 1492, 1751
TspGWI ACGGA 2 cut(s) 1718, 1739
TspRI CASTG 5 cut(s) 35, 163, 265, 1393, 1501
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 4 cut(s) 75, 505, 1115, 1543
XagI CCTNNNNNAGG 1 cut(s) 560
XapI RAATTY 2 cut(s) 584, 703
XceI RCATGY 1 cut(s) 1686
XcmI CCANNNNNNNNNTGG 2 cut(s) 821, 1332
XmiI GTMKAC 2 cut(s) 593, 1583
XspI CTAG 2 cut(s) 68, 1061
Zsp2I ATGCAT 2 cut(s) 547, 1688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.