Rh7DG008100

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
675352 .. 679102
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG008100.1

Sequence Viewer

Length: 1401 bp
ATGTATTATGATGACTTGCCCATCTGGGGTTTCATTGGGAAGGTCGACAAGGAAAACAAGGACCCAAGCGAGTACAAGACCTACCTCTATAAGCACATTCATTTTGATATCTTGTACAACAAGGACCGTGTGATCGAAATCAATGTTCAAACAGATCCTCATGCTCTTGTGGACCTTACTGAGGACAAAGAAGTCGATGTTGAGTTTTTGTATACAGTAAAATGGAGGGAAACAAACACTCCTTTTGATAAGAGGATGGATAAGTATTCTCAGTCCTCATCCCTGCCTCATCATTTGGAGATCCATTGGTTCTCCATTATTAATTCATGTGTCACAGTTCTGCTCTTGACTGGGTTTCTTGCCACAATTCTTATGCGAGTGCTTAAGAACGATTTTGTCAAATATGCCCATGATGAGGAAGCCGCTGAAGACCAAGAAGAGACTGGATGGAAATACATTCACGGAGATGTATTTAGGTTTCCCAAATACAAGTCTCTGTTTGCAGCAGCTCTTGGTTCCGGCACCCAACTTTTTACACTTACAATCTTCATCTTCGTACTCGCTCTTGTCGGTGTCTTTTATCCATACAACCGAGGTGCCTTATTTACCGCTCTAGTTGTAATTTATGCGCTCACGTCGGGAATTGCAGGCTATACTGCTACTTCATTTTATTGCCAGCTAGAGGGGACAAACTGGGTTCGAAATCTGTTGTTGACGGGATGCCTCTTCTGTGGACCTTTGTTTCTCACATTCTGCTTTTTGAATACTGTCGCAATTGCTTACACAGCCACTGCAGCACTTCCATTTGGCACAATTGTGGTTATAGTTCTAATATGGACACTTGTTACATCACCTTTATTGGTGTTGGGTGGGATTGCCGGGAAGAACAGTAAAGCTGAGTTCCAAGCTCCTGTTCGCACCACTAAGTATCCCAGAGAGATTCCGCCCTTGCCTTGGTACCGGGCAACAGTCCCTCAAATGGCAATGGCTGGCTTTCTGCCTTTCAGTGCCATATATATTGAACTGTACTACATCTTTGCCAGTGTCTGGGGTCACAGGATTTACACCATTTACAGCATCTTGTTTATCGTGTTTATCATTCTACTGATAGTCACCGCTTTCATTACCGTGGCATTGACATATTTCCAACTAGCTGCTGAGGACCATGAGTGGTGGTGGAGATCTTTTCTCTGTGGTGGGTCGACTGGCATATTCATCTATGCCTACTGTTTGTATTACTACTACGCACGCTCAGATATGTCCGGGTTTATGCAAACATCATTCTTCTTTGGTTACATGGCATGCATCTGCTATGGTTTCTTCCTCATGCTCGGATCTGTGGGCTTCCGGGCAGCTTTGCTATTTGTCCGTCACATATACCGATCCATTAAGTGCGAGTAA

Protein Analysis

466

Amino Acids

53.55

Weight (kDa)

6.42

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP70 PF02990 1 - 423 1.3e-155 Endomembrane protein 70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 957
AccB1I GGYRCC 3 cut(s) 521, 596, 957
AccB7I CCANNNNNTGG 1 cut(s) 1047
AccBSI CCGCTC 1 cut(s) 611
AccI GTMKAC 3 cut(s) 45, 212, 1202
AciI CCGC 4 cut(s) 423, 609, 944, 1116
AclWI GGATC 4 cut(s) 149, 295, 1342, 1377
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 5 cut(s) 74, 116, 558, 959, 1028
AfiI CCNNNNNNNGG 7 cut(s) 26, 181, 415, 682, 954, 979, 1047
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 3 cut(s) 149, 763, 1022
AjiI CACGTC 1 cut(s) 636
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AleI CACNNNNGTG 1 cut(s) 815
AluBI AGCT 6 cut(s) 509, 679, 896, 908, 1154, 1355
AluI AGCT 6 cut(s) 509, 679, 896, 908, 1154, 1355
Alw26I GTCTC 2 cut(s) 434, 498
AlwI GGATC 4 cut(s) 149, 295, 1342, 1377
AlwNI CAGNNNCTG 2 cut(s) 791, 1047
ApeKI GCWGC 5 cut(s) 503, 506, 794, 1154, 1352
AseI ATTAAT 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 957
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 5 cut(s) 61, 124, 172, 734, 1162
AsuC2I CCSGG 4 cut(s) 880, 962, 1264, 1349
AsuHPI GGTGA 2 cut(s) 843, 1105
AsuII TTCGAA 1 cut(s) 700
AvaII GGWCC 5 cut(s) 61, 124, 172, 734, 1162
BanI GGYRCC 3 cut(s) 521, 596, 957
BbsI GAAGAC 1 cut(s) 435
BbvCI CCTCAGC 1 cut(s) 1158
BbvI GCAGC 5 cut(s) 515, 518, 806, 1141, 1364
BccI CCATC 3 cut(s) 29, 250, 441
BciVI GTATCC 1 cut(s) 939
BcnI CCSGG 4 cut(s) 880, 962, 1264, 1349
BcoDI GTCTC 2 cut(s) 434, 498
BfaI CTAG 3 cut(s) 614, 680, 1151
BfmI CTRYAG 1 cut(s) 792
BfrI CTTAAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 939
BglII AGATCT 1 cut(s) 1181
BisI GCNGC 6 cut(s) 423, 504, 507, 795, 1155, 1353
BlsI GCNGC 6 cut(s) 424, 505, 508, 796, 1156, 1354
Bme1390I CCNGG 4 cut(s) 880, 962, 1264, 1349
Bme18I GGWCC 5 cut(s) 61, 124, 172, 734, 1162
BmgBI CACGTC 1 cut(s) 636
BmgT120I GGNCC 5 cut(s) 61, 124, 172, 734, 1162
BmiI GGNNCC 5 cut(s) 63, 517, 523, 598, 959
BmrFI CCNGG 4 cut(s) 880, 962, 1264, 1349
BmrI ACTGGG 2 cut(s) 360, 703
BmsI GCATC 3 cut(s) 710, 1086, 1314
BmuI ACTGGG 2 cut(s) 360, 703
BpiI GAAGAC 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 1158
Bpu14I TTCGAA 1 cut(s) 700
BpuMI CCSGG 4 cut(s) 880, 962, 1264, 1349
BsaBI GATNNNNATC 1 cut(s) 137
BsaJI CCNNGG 3 cut(s) 592, 953, 1128
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 181, 415, 682, 954, 979, 1047
Bse1I ACTGG 5 cut(s) 355, 448, 698, 1041, 1210
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 592, 953, 1128
BseGI GGATG 4 cut(s) 261, 278, 452, 725
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 7 cut(s) 26, 181, 415, 682, 954, 979, 1047
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 5 cut(s) 171, 284, 888, 1149, 1266
BseNI ACTGG 5 cut(s) 355, 448, 698, 1041, 1210
BseXI GCAGC 5 cut(s) 515, 518, 806, 1141, 1364
BshNI GGYRCC 3 cut(s) 521, 596, 957
BsiSI CCGG 5 cut(s) 519, 879, 961, 1263, 1348
BslFI GGGAC 2 cut(s) 700, 956
BslI CCNNNNNNNGG 7 cut(s) 26, 181, 415, 682, 954, 979, 1047
BsmAI GTCTC 2 cut(s) 434, 498
BsmFI GGGAC 2 cut(s) 700, 956
Bsp119I TTCGAA 1 cut(s) 700
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
BspACI CCGC 4 cut(s) 423, 609, 944, 1116
BspCNI CTCAG 5 cut(s) 172, 283, 889, 1150, 1265
BspLI GGNNCC 5 cut(s) 63, 517, 523, 598, 959
BspMAI CTGCAG 1 cut(s) 796
BspPI GGATC 4 cut(s) 149, 295, 1342, 1377
BspT104I TTCGAA 1 cut(s) 700
BspT107I GGYRCC 3 cut(s) 521, 596, 957
BspTI CTTAAG 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 990
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 5 cut(s) 355, 448, 698, 1041, 1210
BssECI CCNNGG 3 cut(s) 592, 953, 1128
BssMI GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
BssNAI GTATAC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 953
Bst1107I GTATAC 1 cut(s) 213
Bst4CI ACNGT 9 cut(s) 128, 217, 337, 769, 890, 970, 1026, 1129, 1229
Bst6I CTCTTC 2 cut(s) 432, 731
BstAFI CTTAAG 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 114
BstBI TTCGAA 1 cut(s) 700
BstC8I GCNNGC 5 cut(s) 649, 677, 991, 1249, 1303
BstDEI CTNAG 6 cut(s) 180, 270, 897, 924, 1158, 1252
BstDSI CCRYGG 1 cut(s) 1128
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 4 cut(s) 261, 278, 452, 725
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 6 cut(s) 135, 157, 303, 1184, 1337, 1385
BstMAI GTCTC 2 cut(s) 434, 498
BstMBI GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
BstMWI GCNNNNNNNGC 2 cut(s) 785, 794
BstNSI RCATGY 1 cut(s) 1305
BstSCI CCNGG 4 cut(s) 878, 960, 1262, 1347
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 515, 518, 806, 1141, 1364
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 4 cut(s) 154, 300, 1181, 1334
BstYI RGATCY 4 cut(s) 154, 300, 1181, 1334
BstZ17I GTATAC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 939
BtgI CCRYGG 1 cut(s) 1128
BtrI CACGTC 1 cut(s) 636
BtsCI GGATG 4 cut(s) 261, 278, 452, 725
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 3 cut(s) 789, 1012, 1048
Cac8I GCNNGC 5 cut(s) 649, 677, 991, 1249, 1303
CaiI CAGNNNCTG 2 cut(s) 791, 1047
CfoI GCGC 1 cut(s) 631
Cfr13I GGNCC 5 cut(s) 61, 124, 172, 734, 1162
Csp6I GTAC 5 cut(s) 73, 115, 557, 958, 1027
CviAII CATG 7 cut(s) 161, 327, 410, 1166, 1297, 1302, 1327
CviQI GTAC 5 cut(s) 73, 115, 557, 958, 1027
DdeI CTNAG 6 cut(s) 180, 270, 897, 924, 1158, 1252
DpnI GATC 6 cut(s) 134, 156, 302, 1183, 1336, 1384
DpnII GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 432, 731
EarI CTCTTC 2 cut(s) 432, 731
EciI GGCGGA 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 953
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 5 cut(s) 61, 124, 172, 734, 1162
Eco57I CTGAAG 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 61
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 953
EcoT22I ATGCAT 1 cut(s) 1307
ErhI CCWWGG 1 cut(s) 953
FaeI CATG 7 cut(s) 164, 330, 413, 1169, 1300, 1305, 1330
FaqI GGGAC 2 cut(s) 700, 956
FatI CATG 7 cut(s) 160, 326, 409, 1165, 1296, 1301, 1326
FblI GTMKAC 3 cut(s) 45, 212, 1202
Fnu4HI GCNGC 6 cut(s) 423, 504, 507, 795, 1155, 1353
FokI GGATG 4 cut(s) 265, 268, 459, 732
Fsp4HI GCNGC 6 cut(s) 423, 504, 507, 795, 1155, 1353
FspBI CTAG 3 cut(s) 614, 680, 1151
GlaI GCGC 1 cut(s) 630
GluI GCNGC 6 cut(s) 423, 504, 507, 795, 1155, 1353
HapII CCGG 5 cut(s) 519, 879, 961, 1263, 1348
HhaI GCGC 1 cut(s) 631
Hin1II CATG 7 cut(s) 164, 330, 413, 1169, 1300, 1305, 1330
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HincII GTYRAC 3 cut(s) 46, 714, 1203
HindII GTYRAC 3 cut(s) 46, 714, 1203
HinfI GANTC 1 cut(s) 940
HpaII CCGG 5 cut(s) 519, 879, 961, 1263, 1348
HphI GGTGA 2 cut(s) 843, 1105
Hpy166II GTNNAC 6 cut(s) 46, 172, 213, 714, 734, 1203
Hpy188I TCNGA 2 cut(s) 1255, 1334
Hpy188III TCNNGA 2 cut(s) 346, 639
Hpy8I GTNNAC 6 cut(s) 46, 172, 213, 714, 734, 1203
Hpy99I CGWCG 1 cut(s) 640
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 9 cut(s) 128, 217, 337, 769, 890, 970, 1026, 1129, 1229
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 5 cut(s) 503, 647, 794, 1273, 1305
HpyF10VI GCNNNNNNNGC 2 cut(s) 785, 794
HpyF3I CTNAG 6 cut(s) 180, 270, 897, 924, 1158, 1252
HpySE526I ACGT 1 cut(s) 635
Hsp92II CATG 7 cut(s) 164, 330, 413, 1169, 1300, 1305, 1330
HspAI GCGC 1 cut(s) 629
KpnI GGTACC 1 cut(s) 961
Kzo9I GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
LmnI GCTCC 1 cut(s) 913
Lsp1109I GCAGC 5 cut(s) 515, 518, 806, 1141, 1364
LweI GCATC 3 cut(s) 710, 1086, 1314
MaeI CTAG 3 cut(s) 614, 680, 1151
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 6 cut(s) 331, 844, 1052, 1111, 1292, 1370
MalI GATC 6 cut(s) 134, 156, 302, 1183, 1336, 1384
MbiI CCGCTC 1 cut(s) 611
MboI GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
MboII GAAGA 8 cut(s) 440, 449, 538, 544, 718, 895, 1276, 1312
MfeI CAATTG 2 cut(s) 774, 813
MflI RGATCY 4 cut(s) 154, 300, 1181, 1334
MluCI AATT 6 cut(s) 322, 366, 621, 642, 774, 813
MmeI TCCRAC 1 cut(s) 1171
Mph1103I ATGCAT 1 cut(s) 1307
MseI TTAA 3 cut(s) 321, 384, 1389
MslI CAYNNNNRTG 3 cut(s) 465, 815, 1127
MspA1I CMGCKG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 5 cut(s) 519, 879, 961, 1263, 1348
MspR9I CCNGG 4 cut(s) 880, 962, 1264, 1349
MunI CAATTG 2 cut(s) 774, 813
MwoI GCNNNNNNNGC 2 cut(s) 785, 794
NciI CCSGG 4 cut(s) 880, 962, 1264, 1349
NdeII GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
NlaIII CATG 7 cut(s) 164, 330, 413, 1169, 1300, 1305, 1330
NlaIV GGNNCC 5 cut(s) 63, 517, 523, 598, 959
NmuCI GTSAC 4 cut(s) 331, 1052, 1111, 1370
NsiI ATGCAT 1 cut(s) 1307
NspI RCATGY 1 cut(s) 1305
NspV TTCGAA 1 cut(s) 700
OliI CACNNNNGTG 1 cut(s) 815
PaeI GCATGC 1 cut(s) 1305
PfeI GAWTC 1 cut(s) 940
PflMI CCANNNNNTGG 1 cut(s) 1047
PkrI GCNGC 6 cut(s) 424, 505, 508, 796, 1156, 1354
PpuMI RGGWCCY 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 321
Psp5II RGGWCCY 1 cut(s) 61
PspN4I GGNNCC 5 cut(s) 63, 517, 523, 598, 959
PspPI GGNCC 5 cut(s) 61, 124, 172, 734, 1162
PspPPI RGGWCCY 1 cut(s) 61
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 2 cut(s) 791, 1047
PsuI RGATCY 4 cut(s) 154, 300, 1181, 1334
RsaI GTAC 5 cut(s) 74, 116, 558, 959, 1028
RsaNI GTAC 5 cut(s) 73, 115, 557, 958, 1027
RseI CAYNNNNRTG 3 cut(s) 465, 815, 1127
SalI GTCGAC 2 cut(s) 44, 1201
SaqAI TTAA 3 cut(s) 321, 384, 1389
SatI GCNGC 6 cut(s) 423, 504, 507, 795, 1155, 1353
Sau3AI GATC 6 cut(s) 132, 154, 300, 1181, 1334, 1382
Sau96I GGNCC 5 cut(s) 61, 124, 172, 734, 1162
ScrFI CCNGG 4 cut(s) 880, 962, 1264, 1349
SfaNI GCATC 3 cut(s) 710, 1086, 1314
SfcI CTRYAG 1 cut(s) 792
SfuI TTCGAA 1 cut(s) 700
SinI GGWCC 5 cut(s) 61, 124, 172, 734, 1162
SmiMI CAYNNNNRTG 3 cut(s) 465, 815, 1127
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 1305
Sse9I AATT 6 cut(s) 322, 366, 621, 642, 774, 813
SsiI CCGC 4 cut(s) 423, 609, 944, 1116
SspMI CTAG 3 cut(s) 614, 680, 1151
StyD4I CCNGG 4 cut(s) 878, 960, 1262, 1347
StyI CCWWGG 1 cut(s) 953
TaaI ACNGT 9 cut(s) 128, 217, 337, 769, 890, 970, 1026, 1129, 1229
TaiI ACGT 1 cut(s) 638
TaqI TCGA 5 cut(s) 45, 135, 195, 700, 1202
TasI AATT 6 cut(s) 322, 366, 621, 642, 774, 813
TatI WGTACW 3 cut(s) 72, 114, 1026
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 940
Tru1I TTAA 3 cut(s) 321, 384, 1389
Tru9I TTAA 3 cut(s) 321, 384, 1389
TscAI CASTG 3 cut(s) 796, 1012, 1048
TseFI GTSAC 4 cut(s) 331, 1052, 1111, 1370
TseI GCWGC 5 cut(s) 503, 506, 794, 1154, 1352
Tsp45I GTSAC 4 cut(s) 331, 1052, 1111, 1370
TspDTI ATGAA 7 cut(s) 22, 89, 315, 538, 654, 1111, 1204
TspGWI ACGGA 2 cut(s) 477, 1358
TspRI CASTG 3 cut(s) 796, 1012, 1048
Van91I CCANNNNNTGG 1 cut(s) 1047
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 5 cut(s) 61, 124, 172, 734, 1162
VspI ATTAAT 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 179
XceI RCATGY 1 cut(s) 1305
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 3 cut(s) 45, 212, 1202
XspI CTAG 3 cut(s) 614, 680, 1151
Zsp2I ATGCAT 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.