Rmu_sc0004786.1_g000001

Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004786.1
Physical Location & Seq
Forward (+)
1 .. 2556
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004786.1_g000001.1.cds

Sequence Viewer

Length: 1624 bp
tgaaacctacaggtactttgatctcccattctgctcaccagatgcggttaaagagaaaaaggaagctcttggtgaagtattgaatggggatcgtttagtcagcgccccttacaagcttgagttcctgaaacataaagattcggaacaggtttgcaaaaggactctcaagaaggaagaagtggccaagttcagatctgctgtgaacaaggactattactttcaaatgtattatgatgacttgcccatctggggtttcattgggaaggtcgacaaggaaaacaaggacccaagcgagtacaagacctacctctataagcacatccattttgatatcttgtacaacaaggaccgtgtgatcgaaatcaatgttcaaacagatcctcatgctcttgtggaccttaccgaggacaaagaagtcgatgttgagtttttgtatacagtaaaatggagggaaacaaacactccttttgataagaggatggataagtattctcagtcctcatccctgcctcatcatttggagatccattggttctccattattaattcatgtgtcacagttctgctcttgactgggtttcttgccacaattcttatgcgagtgcttaagaacgattttgtcaaatatgcccatgatgaggaagcagctgaagaccaagaagagactggatggaaatacattcacggagatgtatttaggtttcccaaatacaagtctctgtttgcagcagctcttggttctggcacccaactttttacactcacaatcttcatcttcgtactcgctcttgttggtgtcttttatccatacaaccgaggtgccttatttaccgctctagttgtaatttatgcgctcacttcgggaattgcaggatatactgctacttcattttattgccagctagaggggacaaactgggttcgaaatctgttgttgacgggatgcctcttctgtggacctttgtttctcacattctgctttttgaatactgtcgcaattgcttacacagccactgcagcacttccatttggcacaattgtggttatagttctaatatggacacttgttacatcacctttattggtgttgggtgggattgccgggaagaacagtaaggctgagttccaagctcctgttcgcaccactaagtatcccagagagattccgcctttgccttggtaccgggcaacagtccctcaaatggcaatggctggctttctgcctttcagtgccatatatattgaactgtactacatctttgccagtgtctggggtcacaggatttacaccatttacagcatcttgtttatcgtgtttatcattctactgatagtcaccgctttcattaccgtggcattgacatatttccaactagctgctgaggaccatgagtggtggtggagatcttttctctgtggtgggtcgactggcatattcatctatgcctactgtctgtattactactacgcacgctcggatatgtccgggtttatgcaaacatcattcttctttggttacatggcatgcatctgctatggtttcttcctcatgctcggatctgtgggcttccgggcagctttgctatttgtccgtcacatataccgatccattaagtgcgagtaa

Protein Analysis

540

Amino Acids

62.27

Weight (kDa)

6.94

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 1180
AccB1I GGYRCC 3 cut(s) 744, 819, 1180
AccB7I CCANNNNNTGG 1 cut(s) 1270
AccBSI CCGCTC 1 cut(s) 834
AccI GTMKAC 3 cut(s) 268, 435, 1425
AciI CCGC 4 cut(s) 45, 832, 1167, 1339
AclWI GGATC 5 cut(s) 97, 372, 518, 1565, 1600
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 670
AfaI GTAC 6 cut(s) 15, 297, 339, 781, 1182, 1251
AfiI CCNNNNNNNGG 6 cut(s) 249, 404, 638, 905, 1202, 1270
AflII CTTAAG 1 cut(s) 606
AgsI TTSAA 5 cut(s) 83, 222, 372, 986, 1245
AjuI GAANNNNNNNTTGG 2 cut(s) 1120, 1152
AleI CACNNNNGTG 1 cut(s) 1038
AluBI AGCT 8 cut(s) 66, 116, 648, 732, 902, 1131, 1377, 1578
AluI AGCT 8 cut(s) 66, 116, 648, 732, 902, 1131, 1377, 1578
Alw26I GTCTC 2 cut(s) 657, 721
AlwI GGATC 5 cut(s) 97, 372, 518, 1565, 1600
AlwNI CAGNNNCTG 2 cut(s) 1014, 1270
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 6 cut(s) 645, 726, 729, 1017, 1377, 1575
AseI ATTAAT 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 1180
AspLEI GCGC 2 cut(s) 105, 854
AspS9I GGNCC 5 cut(s) 284, 347, 395, 957, 1385
AsuC2I CCSGG 4 cut(s) 1103, 1185, 1487, 1572
AsuHPI GGTGA 4 cut(s) 28, 84, 1066, 1328
AsuII TTCGAA 1 cut(s) 923
AvaII GGWCC 5 cut(s) 284, 347, 395, 957, 1385
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 3 cut(s) 744, 819, 1180
BbsI GAAGAC 1 cut(s) 658
BbvCI CCTCAGC 1 cut(s) 1381
BbvI GCAGC 6 cut(s) 657, 738, 741, 1029, 1364, 1587
BccI CCATC 3 cut(s) 252, 473, 664
BciVI GTATCC 1 cut(s) 1162
BcnI CCSGG 4 cut(s) 1103, 1185, 1487, 1572
BcoDI GTCTC 2 cut(s) 657, 721
BfaI CTAG 3 cut(s) 837, 903, 1374
BfmI CTRYAG 2 cut(s) 8, 1015
BfoI RGCGCY 1 cut(s) 106
BfrI CTTAAG 1 cut(s) 606
BfuI GTATCC 1 cut(s) 1162
BglII AGATCT 2 cut(s) 192, 1404
BisI GCNGC 6 cut(s) 646, 727, 730, 1018, 1378, 1576
BlsI GCNGC 6 cut(s) 647, 728, 731, 1019, 1379, 1577
Bme1390I CCNGG 4 cut(s) 1103, 1185, 1487, 1572
Bme18I GGWCC 5 cut(s) 284, 347, 395, 957, 1385
BmgT120I GGNCC 5 cut(s) 284, 347, 395, 957, 1385
BmiI GGNNCC 4 cut(s) 286, 746, 821, 1182
BmrFI CCNGG 4 cut(s) 1103, 1185, 1487, 1572
BmrI ACTGGG 2 cut(s) 583, 926
BmsI GCATC 4 cut(s) 32, 933, 1309, 1537
BmuI ACTGGG 2 cut(s) 583, 926
BpiI GAAGAC 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 1381
Bpu14I TTCGAA 1 cut(s) 923
BpuEI CTTGAG 2 cut(s) 138, 150
BpuMI CCSGG 4 cut(s) 1103, 1185, 1487, 1572
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 403, 815, 1176, 1351
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 6 cut(s) 249, 404, 638, 905, 1202, 1270
Bse1I ACTGG 5 cut(s) 578, 671, 921, 1264, 1433
Bse3DI GCAATG 1 cut(s) 1213
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 403, 815, 1176, 1351
BseGI GGATG 5 cut(s) 319, 484, 501, 675, 948
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 6 cut(s) 249, 404, 638, 905, 1202, 1270
BseMI GCAATG 1 cut(s) 1213
BseMII CTCAG 3 cut(s) 507, 1111, 1372
BseNI ACTGG 5 cut(s) 578, 671, 921, 1264, 1433
BseXI GCAGC 6 cut(s) 657, 738, 741, 1029, 1364, 1587
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 3 cut(s) 744, 819, 1180
BsiSI CCGG 4 cut(s) 1102, 1184, 1486, 1571
BslFI GGGAC 2 cut(s) 923, 1179
BslI CCNNNNNNNGG 6 cut(s) 249, 404, 638, 905, 1202, 1270
BsmAI GTCTC 2 cut(s) 657, 721
BsmFI GGGAC 2 cut(s) 923, 1179
BsnI GGCC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 923
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
BspACI CCGC 4 cut(s) 45, 832, 1167, 1339
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 506, 1112, 1373
BspLI GGNNCC 4 cut(s) 286, 746, 821, 1182
BspMAI CTGCAG 1 cut(s) 1019
BspPI GGATC 5 cut(s) 97, 372, 518, 1565, 1600
BspT104I TTCGAA 1 cut(s) 923
BspT107I GGYRCC 3 cut(s) 744, 819, 1180
BspTI CTTAAG 1 cut(s) 606
BsrBI CCGCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 1213
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 5 cut(s) 578, 671, 921, 1264, 1433
BssECI CCNNGG 4 cut(s) 403, 815, 1176, 1351
BssMI GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
BssNAI GTATAC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 1176
Bst1107I GTATAC 1 cut(s) 436
Bst4CI ACNGT 9 cut(s) 351, 440, 560, 992, 1113, 1193, 1249, 1352, 1452
Bst6I CTCTTC 2 cut(s) 655, 954
BstAFI CTTAAG 1 cut(s) 606
BstAUI TGTACA 1 cut(s) 337
BstBI TTCGAA 1 cut(s) 923
BstC8I GCNNGC 4 cut(s) 900, 1214, 1472, 1526
BstDEI CTNAG 4 cut(s) 493, 1120, 1147, 1381
BstDSI CCRYGG 1 cut(s) 1351
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 5 cut(s) 319, 484, 501, 675, 948
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 854
BstKTI GATC 9 cut(s) 23, 92, 195, 358, 380, 526, 1407, 1560, 1608
BstMAI GTCTC 2 cut(s) 657, 721
BstMBI GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
BstMWI GCNNNNNNNGC 2 cut(s) 1008, 1017
BstNSI RCATGY 1 cut(s) 1528
BstSCI CCNGG 4 cut(s) 1101, 1183, 1485, 1570
BstSFI CTRYAG 2 cut(s) 8, 1015
BstV1I GCAGC 6 cut(s) 657, 738, 741, 1029, 1364, 1587
BstV2I GAAGAC 1 cut(s) 658
BstX2I RGATCY 5 cut(s) 192, 377, 523, 1404, 1557
BstYI RGATCY 5 cut(s) 192, 377, 523, 1404, 1557
BstZ17I GTATAC 1 cut(s) 436
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 1351
BtsCI GGATG 5 cut(s) 319, 484, 501, 675, 948
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 3 cut(s) 1012, 1235, 1271
Cac8I GCNNGC 4 cut(s) 900, 1214, 1472, 1526
CaiI CAGNNNCTG 2 cut(s) 1014, 1270
CfoI GCGC 2 cut(s) 105, 854
Cfr13I GGNCC 5 cut(s) 284, 347, 395, 957, 1385
Csp6I GTAC 6 cut(s) 14, 296, 338, 780, 1181, 1250
CviAII CATG 7 cut(s) 384, 550, 633, 1389, 1520, 1525, 1550
CviQI GTAC 6 cut(s) 14, 296, 338, 780, 1181, 1250
DdeI CTNAG 4 cut(s) 493, 1120, 1147, 1381
DpnI GATC 9 cut(s) 22, 91, 194, 357, 379, 525, 1406, 1559, 1607
DpnII GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
DrdI GACNNNNNNGTC 1 cut(s) 414
DseDI GACNNNNNNGTC 1 cut(s) 414
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 655, 954
EarI CTCTTC 2 cut(s) 655, 954
EciI GGCGGA 1 cut(s) 1156
Eco130I CCWWGG 1 cut(s) 1176
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 5 cut(s) 284, 347, 395, 957, 1385
Eco57I CTGAAG 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 284
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 1176
EcoT22I ATGCAT 1 cut(s) 1530
ErhI CCWWGG 1 cut(s) 1176
FaeI CATG 7 cut(s) 387, 553, 636, 1392, 1523, 1528, 1553
FaqI GGGAC 2 cut(s) 923, 1179
FatI CATG 7 cut(s) 383, 549, 632, 1388, 1519, 1524, 1549
FblI GTMKAC 3 cut(s) 268, 435, 1425
Fnu4HI GCNGC 6 cut(s) 646, 727, 730, 1018, 1378, 1576
FokI GGATG 5 cut(s) 306, 488, 491, 682, 955
Fsp4HI GCNGC 6 cut(s) 646, 727, 730, 1018, 1378, 1576
FspBI CTAG 3 cut(s) 837, 903, 1374
GlaI GCGC 2 cut(s) 104, 853
GluI GCNGC 6 cut(s) 646, 727, 730, 1018, 1378, 1576
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 1 cut(s) 183
HapII CCGG 4 cut(s) 1102, 1184, 1486, 1571
HhaI GCGC 2 cut(s) 105, 854
Hin1II CATG 7 cut(s) 387, 553, 636, 1392, 1523, 1528, 1553
Hin6I GCGC 2 cut(s) 103, 852
HinP1I GCGC 2 cut(s) 103, 852
HincII GTYRAC 3 cut(s) 269, 937, 1426
HindII GTYRAC 3 cut(s) 269, 937, 1426
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 3 cut(s) 138, 161, 1163
HpaII CCGG 4 cut(s) 1102, 1184, 1486, 1571
HphI GGTGA 4 cut(s) 28, 84, 1066, 1328
Hpy166II GTNNAC 7 cut(s) 203, 269, 395, 436, 937, 957, 1426
Hpy188I TCNGA 4 cut(s) 143, 192, 1478, 1557
Hpy188III TCNNGA 4 cut(s) 125, 167, 569, 862
Hpy8I GTNNAC 7 cut(s) 203, 269, 395, 436, 937, 957, 1426
HpyAV CCTTC 2 cut(s) 164, 257
HpyCH4III ACNGT 9 cut(s) 351, 440, 560, 992, 1113, 1193, 1249, 1352, 1452
HpyCH4V TGCA 6 cut(s) 154, 726, 870, 1017, 1496, 1528
HpyF10VI GCNNNNNNNGC 2 cut(s) 1008, 1017
HpyF3I CTNAG 4 cut(s) 493, 1120, 1147, 1381
Hsp92II CATG 7 cut(s) 387, 553, 636, 1392, 1523, 1528, 1553
HspAI GCGC 2 cut(s) 103, 852
KpnI GGTACC 1 cut(s) 1184
Kzo9I GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
LmnI GCTCC 1 cut(s) 1136
Lsp1109I GCAGC 6 cut(s) 657, 738, 741, 1029, 1364, 1587
LweI GCATC 4 cut(s) 32, 933, 1309, 1537
MaeI CTAG 3 cut(s) 837, 903, 1374
MaeIII GTNAC 6 cut(s) 554, 1067, 1275, 1334, 1515, 1593
MalI GATC 9 cut(s) 22, 91, 194, 357, 379, 525, 1406, 1559, 1607
MbiI CCGCTC 1 cut(s) 834
MboI GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
MboII GAAGA 9 cut(s) 186, 663, 672, 761, 767, 941, 1118, 1499, 1535
MfeI CAATTG 2 cut(s) 997, 1036
MflI RGATCY 5 cut(s) 192, 377, 523, 1404, 1557
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 6 cut(s) 545, 589, 844, 865, 997, 1036
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 1394
Mox20I TGGCCA 1 cut(s) 183
Mph1103I ATGCAT 1 cut(s) 1530
MscI TGGCCA 1 cut(s) 183
MseI TTAA 4 cut(s) 49, 544, 607, 1612
MslI CAYNNNNRTG 3 cut(s) 688, 1038, 1350
Msp20I TGGCCA 1 cut(s) 183
MspA1I CMGCKG 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 606
MspI CCGG 4 cut(s) 1102, 1184, 1486, 1571
MspR9I CCNGG 4 cut(s) 1103, 1185, 1487, 1572
MunI CAATTG 2 cut(s) 997, 1036
MwoI GCNNNNNNNGC 2 cut(s) 1008, 1017
NciI CCSGG 4 cut(s) 1103, 1185, 1487, 1572
NdeII GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
NlaIII CATG 7 cut(s) 387, 553, 636, 1392, 1523, 1528, 1553
NlaIV GGNNCC 4 cut(s) 286, 746, 821, 1182
NmuCI GTSAC 4 cut(s) 554, 1275, 1334, 1593
NsiI ATGCAT 1 cut(s) 1530
NspI RCATGY 1 cut(s) 1528
NspV TTCGAA 1 cut(s) 923
OliI CACNNNNGTG 1 cut(s) 1038
PaeI GCATGC 1 cut(s) 1528
PfeI GAWTC 2 cut(s) 138, 1163
PflMI CCANNNNNTGG 1 cut(s) 1270
PkrI GCNGC 6 cut(s) 647, 728, 731, 1019, 1379, 1577
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PpuMI RGGWCCY 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 544
Psp5II RGGWCCY 1 cut(s) 284
PspN4I GGNNCC 4 cut(s) 286, 746, 821, 1182
PspPI GGNCC 5 cut(s) 284, 347, 395, 957, 1385
PspPPI RGGWCCY 1 cut(s) 284
PstI CTGCAG 1 cut(s) 1019
PstNI CAGNNNCTG 2 cut(s) 1014, 1270
PsuI RGATCY 5 cut(s) 192, 377, 523, 1404, 1557
PvuII CAGCTG 1 cut(s) 648
RsaI GTAC 6 cut(s) 15, 297, 339, 781, 1182, 1251
RsaNI GTAC 6 cut(s) 14, 296, 338, 780, 1181, 1250
RseI CAYNNNNRTG 3 cut(s) 688, 1038, 1350
SalI GTCGAC 2 cut(s) 267, 1424
SaqAI TTAA 4 cut(s) 49, 544, 607, 1612
SatI GCNGC 6 cut(s) 646, 727, 730, 1018, 1378, 1576
Sau3AI GATC 9 cut(s) 20, 89, 192, 355, 377, 523, 1404, 1557, 1605
Sau96I GGNCC 5 cut(s) 284, 347, 395, 957, 1385
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 4 cut(s) 1103, 1185, 1487, 1572
SfaNI GCATC 4 cut(s) 32, 933, 1309, 1537
SfcI CTRYAG 2 cut(s) 8, 1015
SfuI TTCGAA 1 cut(s) 923
SinI GGWCC 5 cut(s) 284, 347, 395, 957, 1385
SmiMI CAYNNNNRTG 3 cut(s) 688, 1038, 1350
SmlI CTYRAG 3 cut(s) 117, 165, 606
SmoI CTYRAG 3 cut(s) 117, 165, 606
SphI GCATGC 1 cut(s) 1528
Sse9I AATT 6 cut(s) 545, 589, 844, 865, 997, 1036
SsiI CCGC 4 cut(s) 45, 832, 1167, 1339
SspMI CTAG 3 cut(s) 837, 903, 1374
StyD4I CCNGG 4 cut(s) 1101, 1183, 1485, 1570
StyI CCWWGG 1 cut(s) 1176
TaaI ACNGT 9 cut(s) 351, 440, 560, 992, 1113, 1193, 1249, 1352, 1452
TaqI TCGA 5 cut(s) 268, 358, 418, 923, 1425
TasI AATT 6 cut(s) 545, 589, 844, 865, 997, 1036
TatI WGTACW 3 cut(s) 295, 337, 1249
TfiI GAWTC 2 cut(s) 138, 1163
Tru1I TTAA 4 cut(s) 49, 544, 607, 1612
Tru9I TTAA 4 cut(s) 49, 544, 607, 1612
TscAI CASTG 3 cut(s) 1019, 1235, 1271
TseFI GTSAC 4 cut(s) 554, 1275, 1334, 1593
TseI GCWGC 6 cut(s) 645, 726, 729, 1017, 1377, 1575
Tsp45I GTSAC 4 cut(s) 554, 1275, 1334, 1593
TspDTI ATGAA 6 cut(s) 245, 538, 761, 877, 1334, 1427
TspGWI ACGGA 2 cut(s) 700, 1581
TspRI CASTG 3 cut(s) 1019, 1235, 1271
Van91I CCANNNNNTGG 1 cut(s) 1270
Vha464I CTTAAG 1 cut(s) 606
VpaK11BI GGWCC 5 cut(s) 284, 347, 395, 957, 1385
VspI ATTAAT 1 cut(s) 544
XagI CCTNNNNNAGG 1 cut(s) 402
XceI RCATGY 1 cut(s) 1528
XcmI CCANNNNNNNNNTGG 1 cut(s) 663
XmiI GTMKAC 3 cut(s) 268, 435, 1425
XspI CTAG 3 cut(s) 837, 903, 1374
Zsp2I ATGCAT 1 cut(s) 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.