Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007609

Physical Location & Seq

Genomic Coordinates Forward (+)

15742543 .. 15744946

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGTGAAGATCTGTTGTATTGGAGCTGGATATGTAGGAGGACCAACAATGGCAGTGATTGCATTGAAATGTCCAGATATTGAAGTGGCAGTTGTTGATATCTCTGTTCCTAGAATCAACGCTTGGAACAGTGATCAGCTTCCGATTTACGAGCCAGGTCTTGACGATATCGTTAAGCAATGCAGAGGAAAGAATCTTTTCTTCAGTACTGATGTGGAGAAACATGTTAGAGAAGCTGATATTGTCTTTGTCTCTGTTAACACACCGACTAAAACGACTGGTCTTGGAGCTGGGAAAGCTGCTGATCTCACTTATTGGGAGAGTGCTGCTCGTATGATCGCGGATGTATCGGTTTCTGACAAGATTGTTGTTGAGAAATCGACTGTTCCGGTGAAGACAGCTGAAGCTATTGAGAAGATTTTGATGCATAACAGTAAAGGAATCAAGTTTCAGATTCTTTCGAATCCGGAGTTTCTTGCTGAAGGAACTGCTATCGCTGATCTTTTTAACCCTGACCGTGTTTTGATCGGAGGGCGAGAAACACCTGAAGGATTCAAAGCTGTTCAGACACTTAAAGAGGTTTATGCTAATTGGGTTCCTGAAGGTCAGATCATCACAACTAATCTCTGGTCTGCTGAGCTTTCTAAGTTAGCTGCAAATGCTTTCTTGGCTCAGAGGATTTCATCAGTCAATGCCATGTCTGCACTTTGTGAATCCACTGGTGCTGATGTTACTCAAGTGTCTTACGCTGTTGGTACTGATTCAAGAATCGGTTCCAAATTCTTGAACGCTAGTGTTGGATTCGGAGGTTCTTGTTTCCAGAAGGACATTCTGAATCTCGTCTACATCTGTCAATGCAACGGACTTCCAGAAGTGGCGGAATACTGGAAACAAGTGATCAAGATCAACGATTACCAAAAGAACCGGTTCGTGAACAGAATCGTGTCCTCTATGTTCAACACTGTCTCCAACAAGAAGGTTGCGATTCTTGGATTCGCATTCAAGAAAGACACTGGTGACACAAGGGAAACACCTGCCATTGATGTGTGTAAAGGTCTATTAGGAGACAAAGCACAGATCAGTATCTATGATCCTCAAGTCACAGAGGAACAGATTCAGAGAGATCTCTCGATGAAAAAGTTCGACTGGGACCATCCTCTTCACTTGCAGCCAATGAGTCCAACCACAGTGAAACAAGTGAGTGTGACTTGGGACGCATATGAAGCTACAAAAGACGCACACGCGGTTTGCGTTTTGACTGAGTGGGACGAGTTTAAGTCGTTAGATTACCAGAAGATCTTCGACAACATGCAGAAACCGGCTTTTATCTTCGACGGAAGAAACATTATGAATGTTAACAAGTTAAGAGAGATTGGTTTCATTGTTTACTCCATTGGTAAGCCACTTGACCCATGGCTCAAGGACATGCCTGCCTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009664 GO:0009987 GO:0010393 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0030312 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046394 GO:0046398 GO:0046483 GO:0048046 GO:0052546 GO:0055086 GO:0055114 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

480

Amino Acids

53.1

Weight (kDa)

5.6

Isoelectric Point (pI)

23.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_N	PF03721	3 - 184	6.2e-65	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh	PF00984	210 - 304	1.9e-32	UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C	PF03720	328 - 451	6.1e-31	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29360 AT3G29360 AT5G15490 AT5G39320
fragaria_vesca	FvH4_7g08190
malus_domestica	MD00G1075000.v1.1 MD15G1316900.v1.1
prunus_persica	Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.7G028000_v2.0.a1
pyrus_communis	pycom01g06430 pycom15g27960
rosa_chinensis	RchiOBHm_Chr1g0340961
rosa_laevigata	RLG00000029054
rosa_multiflora	Rmu_sc0001211.1_g000083 Rmu_sc0002200.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311610
rosa_rugosa	Rorug01G0160500.1
rosa_samantha	Rh1AG175200 Rh1BG143500 Rh1CG163200 Rh1DG175100
rosa_wichuraiana	Rw1G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1042
Acc36I	ACCTGC	1 cut(s)	1042
AccI	GTMKAC	1 cut(s)	843
AccII	CGCG	2 cut(s)	341, 1244
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	3 cut(s)	341, 878, 1244
AclWI	GGATC	1 cut(s)	1085
AcsI	RAATTY	1 cut(s)	779
AcuI	CTGAAG	5 cut(s)	187, 423, 501, 567, 621
AdeI	CACNNNGTG	1 cut(s)	710
AfaI	GTAC	2 cut(s)	208, 757
AflIII	ACRYGT	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	924
AgsI	TTSAA	7 cut(s)	67, 83, 556, 765, 787, 958, 1003
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
Alw26I	GTCTC	3 cut(s)	256, 970, 1059
AlwI	GGATC	1 cut(s)	1085
Aor13HI	TCCGGA	1 cut(s)	466
ApeKI	GCWGC	4 cut(s)	299, 326, 653, 1168
ApoI	RAATTY	1 cut(s)	779
AsiGI	ACCGGT	1 cut(s)	924
Asp700I	GAANNNNTTC	6 cut(s)	197, 772, 926, 1113, 1139, 1298
AspS9I	GGNCC	2 cut(s)	41, 1150
AsuHPI	GGTGA	3 cut(s)	16, 403, 1028
AsuII	TTCGAA	1 cut(s)	461
AvaII	GGWCC	2 cut(s)	41, 1150
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	286, 313, 640, 1180
BccI	CCATC	1 cut(s)	1161
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	2 cut(s)	133, 897
BcoDI	GTCTC	3 cut(s)	256, 970, 1059
BfaI	CTAG	2 cut(s)	111, 792
BfuAI	ACCTGC	1 cut(s)	1042
BglII	AGATCT	3 cut(s)	9, 1123, 1296
BisI	GCNGC	4 cut(s)	300, 327, 654, 1169
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	4 cut(s)	301, 328, 655, 1170
BmcAI	AGTACT	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	41, 1150
BmgT120I	GGNCC	2 cut(s)	41, 1150
BmiI	GGNNCC	3 cut(s)	597, 775, 1151
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	1156
BmsI	GCATC	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	1156
BpiI	GAAGAC	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
Bpu1102I	GCTNAGC	1 cut(s)	636
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	3 cut(s)	720, 1080, 1403
BsaBI	GATNNNNATC	2 cut(s)	902, 1082
BsaJI	CCNNGG	1 cut(s)	1412
BsaWI	WCCGGW	3 cut(s)	388, 466, 924
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bse118I	RCCGGY	2 cut(s)	924, 1318
Bse1I	ACTGG	5 cut(s)	283, 724, 890, 1018, 1151
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	2 cut(s)	902, 1082
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	1412
BseGI	GGATG	2 cut(s)	349, 1153
BseJI	GATNNNNATC	2 cut(s)	902, 1082
BseMI	GCAATG	1 cut(s)	185
BseMII	CTCAG	3 cut(s)	627, 686, 1251
BseNI	ACTGG	5 cut(s)	283, 724, 890, 1018, 1151
BseXI	GCAGC	4 cut(s)	286, 313, 640, 1180
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	341, 1244
BshTI	ACCGGT	1 cut(s)	924
BsiSI	CCGG	4 cut(s)	389, 467, 925, 1319
BslFI	GGGAC	3 cut(s)	1163, 1226, 1280
BsmAI	GTCTC	3 cut(s)	256, 970, 1059
BsmFI	GGGAC	3 cut(s)	1163, 1226, 1280
BsmI	GAATGC	1 cut(s)	998
Bsp119I	TTCGAA	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	466
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	1412
BspACI	CCGC	3 cut(s)	341, 878, 1244
BspCNI	CTCAG	3 cut(s)	628, 685, 1252
BspEI	TCCGGA	1 cut(s)	466
BspFNI	CGCG	2 cut(s)	341, 1244
BspLI	GGNNCC	3 cut(s)	597, 775, 1151
BspMI	ACCTGC	1 cut(s)	1042
BspPI	GGATC	1 cut(s)	1085
BspT104I	TTCGAA	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	924, 1318
BsrI	ACTGG	5 cut(s)	283, 724, 890, 1018, 1151
BssAI	RCCGGY	2 cut(s)	924, 1318
BssECI	CCNNGG	1 cut(s)	1412
BssT1I	CCWWGG	1 cut(s)	1412
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	6 cut(s)	131, 385, 434, 518, 964, 1189
Bst6I	CTCTTC	1 cut(s)	1164
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	1431
BstDEI	CTNAG	4 cut(s)	636, 645, 672, 1260
BstDSI	CCRYGG	1 cut(s)	1412
BstF5I	GGATG	2 cut(s)	349, 1153
BstFNI	CGCG	2 cut(s)	341, 1244
BstMAI	GTCTC	3 cut(s)	256, 970, 1059
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 296, 659, 668, 701, 1223
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	3 cut(s)	227, 1312, 1429
BstSCI	CCNGG	1 cut(s)	154
BstUI	CGCG	2 cut(s)	341, 1244
BstV1I	GCAGC	4 cut(s)	286, 313, 640, 1180
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	3 cut(s)	9, 1123, 1296
BstYI	RGATCY	3 cut(s)	9, 1123, 1296
BtgI	CCRYGG	1 cut(s)	1412
BtsCI	GGATG	2 cut(s)	349, 1153
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	6 cut(s)	60, 136, 717, 960, 1011, 1194
BveI	ACCTGC	1 cut(s)	1042
Cac8I	GCNNGC	1 cut(s)	1431
Cfr10I	RCCGGY	2 cut(s)	924, 1318
Cfr13I	GGNCC	2 cut(s)	41, 1150
CseI	GACGC	2 cut(s)	1223, 1244
Csp6I	GTAC	2 cut(s)	207, 756
CspAI	ACCGGT	1 cut(s)	924
CviAII	CATG	5 cut(s)	224, 697, 1309, 1413, 1426
CviQI	GTAC	2 cut(s)	207, 756
DdeI	CTNAG	4 cut(s)	636, 645, 672, 1260
DraIII	CACNNNGTG	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	1164
EarI	CTCTTC	1 cut(s)	1164
EciI	GGCGGA	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	1412
Eco32I	GATATC	2 cut(s)	100, 169
Eco47I	GGWCC	2 cut(s)	41, 1150
Eco57I	CTGAAG	5 cut(s)	187, 423, 501, 567, 621
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	2 cut(s)	100, 169
EcoT14I	CCWWGG	1 cut(s)	1412
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	1412
FaeI	CATG	5 cut(s)	227, 700, 1312, 1416, 1429
FaqI	GGGAC	3 cut(s)	1163, 1226, 1280
FatI	CATG	5 cut(s)	223, 696, 1308, 1412, 1425
FauNDI	CATATG	1 cut(s)	1219
FbaI	TGATCA	2 cut(s)	133, 897
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	4 cut(s)	300, 327, 654, 1169
FokI	GGATG	2 cut(s)	356, 1140
Fsp4HI	GCNGC	4 cut(s)	300, 327, 654, 1169
FspBI	CTAG	2 cut(s)	111, 792
GluI	GCNGC	4 cut(s)	300, 327, 654, 1169
GsaI	CCCAGC	1 cut(s)	294
HapII	CCGG	4 cut(s)	389, 467, 925, 1319
HgaI	GACGC	2 cut(s)	1223, 1244
Hin1II	CATG	5 cut(s)	227, 700, 1312, 1416, 1429
HincII	GTYRAC	2 cut(s)	259, 1357
HindII	GTYRAC	2 cut(s)	259, 1357
HpaI	GTTAAC	2 cut(s)	259, 1357
HpaII	CCGG	4 cut(s)	389, 467, 925, 1319
HphI	GGTGA	3 cut(s)	16, 403, 1028
Hpy166II	GTNNAC	5 cut(s)	259, 844, 934, 1357, 1387
Hpy8I	GTNNAC	5 cut(s)	259, 844, 934, 1357, 1387
Hpy99I	CGWCG	1 cut(s)	1337
HpyAV	CCTTC	5 cut(s)	476, 542, 596, 817, 970
HpyCH4III	ACNGT	6 cut(s)	131, 385, 434, 518, 964, 1189
HpyCH4V	TGCA	8 cut(s)	62, 183, 427, 656, 704, 858, 1168, 1312
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 296, 659, 668, 701, 1223
HpyF3I	CTNAG	4 cut(s)	636, 645, 672, 1260
Hsp92II	CATG	5 cut(s)	227, 700, 1312, 1416, 1429
Kpn2I	TCCGGA	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	133, 897
KspAI	GTTAAC	2 cut(s)	259, 1357
LmnI	GCTCC	2 cut(s)	23, 287
Lsp1109I	GCAGC	4 cut(s)	286, 313, 640, 1180
LweI	GCATC	1 cut(s)	414
MaeI	CTAG	2 cut(s)	111, 792
MaeIII	GTNAC	4 cut(s)	730, 1016, 1099, 1204
MboII	GAAGA	9 cut(s)	19, 193, 406, 427, 1151, 1291, 1306, 1321, 1350
MflI	RGATCY	3 cut(s)	9, 1123, 1296
MluCI	AATT	2 cut(s)	589, 779
MlyI	GAGTC	1 cut(s)	1186
MmeI	TCCRAC	3 cut(s)	778, 993, 1205
Mph1103I	ATGCAT	1 cut(s)	429
MroI	TCCGGA	1 cut(s)	466
MroXI	GAANNNNTTC	6 cut(s)	197, 772, 926, 1113, 1139, 1298
MseI	TTAA	7 cut(s)	174, 258, 507, 573, 1275, 1356, 1364
MslI	CAYNNNNRTG	2 cut(s)	67, 1043
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	4 cut(s)	389, 467, 925, 1319
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	341, 1244
MwoI	GCNNNNNNNGC	6 cut(s)	59, 296, 659, 668, 701, 1223
NcoI	CCATGG	1 cut(s)	1412
NdeI	CATATG	1 cut(s)	1219
NlaIII	CATG	5 cut(s)	227, 700, 1312, 1416, 1429
NlaIV	GGNNCC	3 cut(s)	597, 775, 1151
NmuCI	GTSAC	3 cut(s)	1016, 1099, 1204
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	3 cut(s)	227, 1312, 1429
NspV	TTCGAA	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	1042
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	1248
PctI	GAATGC	1 cut(s)	998
PdmI	GAANNNNTTC	6 cut(s)	197, 772, 926, 1113, 1139, 1298
PinAI	ACCGGT	1 cut(s)	924
PkrI	GCNGC	4 cut(s)	301, 328, 655, 1170
PleI	GAGTC	1 cut(s)	1185
PpsI	GAGTC	1 cut(s)	1185
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	597, 775, 1151
PspPI	GGNCC	2 cut(s)	41, 1150
PsuI	RGATCY	3 cut(s)	9, 1123, 1296
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	208, 757
RsaNI	GTAC	2 cut(s)	207, 756
RseI	CAYNNNNRTG	2 cut(s)	67, 1043
SaqAI	TTAA	7 cut(s)	174, 258, 507, 573, 1275, 1356, 1364
SatI	GCNGC	4 cut(s)	300, 327, 654, 1169
Sau96I	GGNCC	2 cut(s)	41, 1150
ScaI	AGTACT	1 cut(s)	208
SchI	GAGTC	1 cut(s)	1186
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	2 cut(s)	41, 1150
SmiMI	CAYNNNNRTG	2 cut(s)	67, 1043
SmlI	CTYRAG	3 cut(s)	735, 1095, 1418
SmoI	CTYRAG	3 cut(s)	735, 1095, 1418
Sse9I	AATT	2 cut(s)	589, 779
SsiI	CCGC	3 cut(s)	341, 878, 1244
SspMI	CTAG	2 cut(s)	111, 792
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	1412
TaaI	ACNGT	6 cut(s)	131, 385, 434, 518, 964, 1189
TaqI	TCGA	6 cut(s)	380, 461, 1130, 1143, 1302, 1332
TasI	AATT	2 cut(s)	589, 779
TatI	WGTACW	1 cut(s)	206
Tru1I	TTAA	7 cut(s)	174, 258, 507, 573, 1275, 1356, 1364
Tru9I	TTAA	7 cut(s)	174, 258, 507, 573, 1275, 1356, 1364
TscAI	CASTG	6 cut(s)	60, 136, 724, 967, 1018, 1194
TseFI	GTSAC	3 cut(s)	1016, 1099, 1204
TseI	GCWGC	4 cut(s)	299, 326, 653, 1168
Tsp45I	GTSAC	3 cut(s)	1016, 1099, 1204
TspDTI	ATGAA	5 cut(s)	672, 1148, 1236, 1364, 1369
TspGWI	ACGGA	2 cut(s)	876, 1350
TspRI	CASTG	6 cut(s)	60, 136, 724, 967, 1018, 1194
VpaK11BI	GGWCC	2 cut(s)	41, 1150
XapI	RAATTY	1 cut(s)	779
XceI	RCATGY	3 cut(s)	227, 1312, 1429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1410
XmiI	GTMKAC	1 cut(s)	843
XmnI	GAANNNNTTC	6 cut(s)	197, 772, 926, 1113, 1139, 1298
XspI	CTAG	2 cut(s)	111, 792
ZrmI	AGTACT	1 cut(s)	208
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.