Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007609

Physical Location & Seq

Genomic Coordinates Reverse (-)

23586556 .. 23588001

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGTGAAGATATGTTGCATTGGTGCTGGATATGTTGGGGGACCTACAATGGCAGTGATTGCACTTAAGTGCCCATCTGTTGAAGTGGTCGTCGTTGATATCTGGGATAAACGGATTGCAGCTTGGAACAGTGACCAACTTCCCATTTATGAACCCGGCCTCGATGATGTCGTGAAGCAGTGCCGCGGCAAGAACCTCTTCTTCAGCACTGATGTGAAGAAGCACGTCAAGGAAGCTGATATAGTGTTTGTCTCCGTCAACACCCCGACCAAAACTACGGGTCTTGGAGCAGGTAAAGCTGCAGATTTGACATATTGGGAGAGTGCTGCTCGTATGATTGCAGATGTGTCCGACTCTAGCAAAGTTGTTGTTGAAAAATCGACCGTCCCTGTCAAAACAGCTGAGGCAATAGAAAAAATTTTGACCCACAACGGCAAGGGAATCAAATTCCAGATCCTCTCAAACCCTGAATTCCTTGCCGAGGGAACTGCGATCGAAGATCTTTTTAAACCGGACCGGGTCCTCATTGGTGGCAGGGAAACCGCTGAAGGCCAGAAGGCCATCAAAGCATTGAAGGATGTTTATGCTCAGTGGGTTCCTGAAGACCGTATCCTAACCACCAATCTTTGGTCCGCAGAGCTCTCCAAGCTTGCTGCCAATGCGTTCTTGGCACAGAGAATATCGTCTGTTAATTCCATGTCTGCGCTTTGTGAGGCTACTGGGGCCAATGTTACACAGGTTTCACACGCTGTTGGTAAGGACACTAGGATAGGCCGGAAGTTTCTTAACGCTAGTGTCGGTTTTGGGGGATCCTGCTTCCAGAAGGACATCCTGAATCTCGTTTACATCTGTGAATGCAATGGCCTTCCGGAGGTGGCAGAGTACTGGAAACAGGTTGTGAAGATCAATGAGTACCAAAAGAGCCGTTTTGTGAACCGTGTAGTTGCATCCATGTTCAACACTGTGTCGACAAAGAAGATAGCAATACTAGGGTTTGCCTTCAAGAAAGATACTGGTGATACAAGGGAGACCCCAGCAATTGATGTGTGCAAGGGGTTGTTGGTTGACAAGGCCGAACTGAGCATATATGATCCGCAGGTAACCGAGGACCAGATCCGCAGGGACTTGACTATGAGAAAGTTCGACTGGGATCACCCGATGCACCTGCAGCCGATGAGCAGTAGTAGCACTCTGGAGCAAGTGTGTGTGGTCTCGGATGCCTATGAGGCAACAAAGGGTGCCCATGGTATTTGCATTCTCACTGAATGGGATGAGTTTAAGACTCTCGATTACAACAAGATATATGAGAATATGAAGAAACCGGCATTCATTTTCGACGGTAGGCATGTTATCGATGTAGATAAACTGCGTGAAATTGGCTTTATTGTCTTCGCAATTGGCAAGCCCCTGGATGCATGGCTCAAGGACATGCCTGCTGTCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009664 GO:0009987 GO:0010393 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0030312 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046394 GO:0046398 GO:0046483 GO:0048046 GO:0052546 GO:0055086 GO:0055114 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

482

Amino Acids

53.14

Weight (kDa)

6.43

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_N	PF03721	3 - 186	2.8e-66	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh	PF00984	210 - 304	2.3e-32	UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C	PF03720	328 - 452	5.9e-30	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29360 AT3G29360 AT5G15490 AT5G39320
fragaria_vesca	FvH4_7g08190
malus_domestica	MD00G1075000.v1.1 MD15G1316900.v1.1
prunus_persica	Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.7G028000_v2.0.a1
pyrus_communis	pycom01g06430 pycom15g27960
rosa_chinensis	RchiOBHm_Chr1g0340961
rosa_laevigata	RLG00000029054
rosa_multiflora	Rmu_sc0001211.1_g000083 Rmu_sc0002200.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311610
rosa_rugosa	Rorug01G0160500.1
rosa_samantha	Rh1AG175200 Rh1BG143500 Rh1CG163200 Rh1DG175100
rosa_wichuraiana	Rw1G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1173
Acc36I	ACCTGC	3 cut(s)	281, 1087, 1173
AccB1I	GGYRCC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	968
AccII	CGCG	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	6 cut(s)	184, 186, 543, 633, 1094, 1117
AclWI	GGATC	6 cut(s)	448, 804, 817, 1085, 1108, 1158
AcsI	RAATTY	3 cut(s)	417, 446, 470
AcuI	CTGAAG	3 cut(s)	187, 567, 621
AfaI	GTAC	2 cut(s)	884, 914
AfiI	CCNNNNNNNGG	3 cut(s)	481, 627, 871
AflII	CTTAAG	1 cut(s)	65
AgsI	TTSAA	5 cut(s)	83, 374, 574, 958, 1003
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	1407
AleI	CACNNNNGTG	2 cut(s)	67, 212
AluBI	AGCT	6 cut(s)	122, 236, 299, 401, 640, 649
AluI	AGCT	6 cut(s)	122, 236, 299, 401, 640, 649
Alw21I	GWGCWC	1 cut(s)	642
Alw26I	GTCTC	3 cut(s)	256, 1022, 1216
AlwI	GGATC	6 cut(s)	448, 804, 817, 1085, 1108, 1158
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	7 cut(s)	157, 550, 558, 723, 772, 862, 1071
ApeKI	GCWGC	5 cut(s)	119, 299, 326, 653, 1168
ApoI	RAATTY	3 cut(s)	417, 446, 470
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	6 cut(s)	41, 514, 520, 630, 723, 1108
AsuC2I	CCSGG	2 cut(s)	156, 518
AsuHPI	GGTGA	3 cut(s)	16, 1028, 1145
AvaII	GGWCC	5 cut(s)	41, 514, 520, 630, 1108
BaeGI	GKGCMC	2 cut(s)	74, 1243
BamHI	GGATCC	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	1238
BanII	GRGCYC	1 cut(s)	642
BbsI	GAAGAC	2 cut(s)	609, 1381
Bbv12I	GWGCWC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	131, 286, 313, 640, 1180
BccI	CCATC	2 cut(s)	82, 569
BceAI	ACGGC	2 cut(s)	448, 909
BcgI	CGANNNNNNTGC	4 cut(s)	470, 504, 1147, 1181
BciT130I	CCWGG	1 cut(s)	1409
BciVI	GTATCC	1 cut(s)	620
BcnI	CCSGG	2 cut(s)	156, 518
BcoDI	GTCTC	3 cut(s)	256, 1022, 1216
BfaI	CTAG	4 cut(s)	357, 765, 792, 989
BfmI	CTRYAG	2 cut(s)	300, 1166
BfrI	CTTAAG	1 cut(s)	65
BfuAI	ACCTGC	3 cut(s)	281, 1087, 1173
BfuI	GTATCC	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	1226
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	7 cut(s)	120, 184, 187, 300, 327, 654, 1169
BlsI	GCNGC	7 cut(s)	121, 185, 188, 301, 328, 655, 1170
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	3 cut(s)	156, 518, 1409
Bme18I	GGWCC	5 cut(s)	41, 514, 520, 630, 1108
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	6 cut(s)	41, 514, 520, 630, 723, 1108
BmiI	GGNNCC	6 cut(s)	42, 521, 597, 724, 811, 1240
BmrFI	CCNGG	3 cut(s)	156, 518, 1409
BmrI	ACTGGG	2 cut(s)	729, 1156
BmsI	GCATC	4 cut(s)	956, 1149, 1207, 1402
BmuI	ACTGGG	2 cut(s)	729, 1156
BpiI	GAAGAC	2 cut(s)	609, 1381
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
BpmI	CTGGAG	1 cut(s)	1214
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	1406
BpuMI	CCSGG	2 cut(s)	156, 518
Bsa29I	ATCGAT	1 cut(s)	1353
BsaI	GGTCTC	2 cut(s)	1022, 1216
BsaJI	CCNNGG	5 cut(s)	184, 480, 1104, 1243, 1407
BsaWI	WCCGGW	2 cut(s)	511, 868
BsaXI	ACNNNNNCTCC	2 cut(s)	1187, 1217
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 627, 871
Bse118I	RCCGGY	1 cut(s)	1321
Bse1I	ACTGG	4 cut(s)	724, 890, 1018, 1151
Bse3DI	GCAATG	1 cut(s)	865
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	1 cut(s)	1409
BseCI	ATCGAT	1 cut(s)	1353
BseDI	CCNNGG	5 cut(s)	184, 480, 1104, 1243, 1407
BseGI	GGATG	6 cut(s)	583, 828, 947, 1222, 1276, 1417
BseLI	CCNNNNNNNGG	3 cut(s)	481, 627, 871
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	3 cut(s)	393, 602, 1070
BseNI	ACTGG	4 cut(s)	724, 890, 1018, 1151
BseSI	GKGCMC	2 cut(s)	74, 1243
BseXI	GCAGC	5 cut(s)	131, 286, 313, 640, 1180
BseYI	CCCAGC	1 cut(s)	1033
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	2 cut(s)	384, 495
BshFI	GGCC	7 cut(s)	159, 552, 560, 725, 774, 864, 1073
BshNI	GGYRCC	1 cut(s)	1238
BshVI	ATCGAT	1 cut(s)	1353
BsiEI	CGRYCG	2 cut(s)	384, 495
BsiHKAI	GWGCWC	1 cut(s)	642
BsiSI	CCGG	6 cut(s)	156, 512, 517, 775, 869, 1322
BslFI	GGGAC	3 cut(s)	54, 371, 1136
BslI	CCNNNNNNNGG	3 cut(s)	481, 627, 871
BsmAI	GTCTC	3 cut(s)	256, 1022, 1216
BsmFI	GGGAC	3 cut(s)	54, 371, 1136
BsmI	GAATGC	3 cut(s)	860, 1254, 1325
BsnI	GGCC	7 cut(s)	159, 552, 560, 725, 774, 864, 1073
Bso31I	GGTCTC	2 cut(s)	1022, 1216
Bsp1286I	GDGCHC	3 cut(s)	74, 642, 1243
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
Bsp19I	CCATGG	1 cut(s)	1243
BspACI	CCGC	6 cut(s)	184, 186, 543, 633, 1094, 1117
BspANI	GGCC	7 cut(s)	159, 552, 560, 725, 774, 864, 1073
BspCNI	CTCAG	3 cut(s)	394, 601, 1071
BspDI	ATCGAT	1 cut(s)	1353
BspEI	TCCGGA	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	6 cut(s)	42, 521, 597, 724, 811, 1240
BspMAI	CTGCAG	2 cut(s)	304, 1170
BspMI	ACCTGC	3 cut(s)	281, 1087, 1173
BspPI	GGATC	6 cut(s)	448, 804, 817, 1085, 1108, 1158
BspT107I	GGYRCC	1 cut(s)	1238
BspTI	CTTAAG	1 cut(s)	65
BspTNI	GGTCTC	2 cut(s)	1022, 1216
BsrDI	GCAATG	1 cut(s)	865
BsrFI	RCCGGY	1 cut(s)	1321
BsrI	ACTGG	4 cut(s)	724, 890, 1018, 1151
BssAI	RCCGGY	1 cut(s)	1321
BssECI	CCNNGG	5 cut(s)	184, 480, 1104, 1243, 1407
BssMI	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
BssT1I	CCWWGG	1 cut(s)	1243
Bst2UI	CCWGG	1 cut(s)	1409
Bst4CI	ACNGT	6 cut(s)	131, 385, 608, 938, 964, 1340
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	3 cut(s)	651, 1403, 1434
BstDEI	CTNAG	3 cut(s)	402, 588, 1079
BstDSI	CCRYGG	2 cut(s)	184, 1243
BstEII	GGTNACC	1 cut(s)	1099
BstENI	CCTNNNNNAGG	2 cut(s)	479, 869
BstF5I	GGATG	6 cut(s)	583, 828, 947, 1222, 1276, 1417
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	8 cut(s)	456, 495, 502, 812, 906, 1093, 1116, 1153
BstMAI	GTCTC	3 cut(s)	256, 1022, 1216
BstMBI	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
BstMCI	CGRYCG	2 cut(s)	384, 495
BstNI	CCWGG	1 cut(s)	1409
BstNSI	RCATGY	2 cut(s)	1349, 1432
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	3 cut(s)	154, 516, 1407
BstSFI	CTRYAG	2 cut(s)	300, 1166
BstSLI	GKGCMC	2 cut(s)	74, 1243
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	131, 286, 313, 640, 1180
BstV2I	GAAGAC	2 cut(s)	609, 1381
BstX2I	RGATCY	4 cut(s)	453, 499, 809, 1113
BstYI	RGATCY	4 cut(s)	453, 499, 809, 1113
Bsu15I	ATCGAT	1 cut(s)	1353
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	7 cut(s)	159, 552, 560, 725, 774, 864, 1073
BsuTUI	ATCGAT	1 cut(s)	1353
BtgI	CCRYGG	2 cut(s)	184, 1243
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	6 cut(s)	583, 828, 947, 1222, 1276, 1417
BtsI	GCAGTG	2 cut(s)	60, 185
BtsIMutI	CAGTG	7 cut(s)	60, 136, 185, 207, 596, 960, 1260
BveI	ACCTGC	3 cut(s)	281, 1087, 1173
Cac8I	GCNNGC	3 cut(s)	651, 1403, 1434
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	1 cut(s)	1321
Cfr13I	GGNCC	6 cut(s)	41, 514, 520, 630, 723, 1108
Cfr42I	CCGCGG	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	1353
CpoI	CGGWCCG	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	883, 913
CspI	CGGWCCG	1 cut(s)	514
CviAII	CATG	6 cut(s)	697, 952, 1244, 1346, 1416, 1429
CviQI	GTAC	2 cut(s)	883, 913
DdeI	CTNAG	3 cut(s)	402, 588, 1079
DpnI	GATC	8 cut(s)	455, 494, 501, 811, 905, 1092, 1115, 1152
DpnII	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
DraI	TTTAAA	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	1243
Eco24I	GRGCYC	1 cut(s)	642
Eco31I	GGTCTC	2 cut(s)	1022, 1216
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	5 cut(s)	41, 514, 520, 630, 1108
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	3 cut(s)	187, 567, 621
Eco91I	GGTNACC	1 cut(s)	1099
EcoICRI	GAGCTC	1 cut(s)	640
EcoNI	CCTNNNNNAGG	2 cut(s)	479, 869
EcoO109I	RGGNCCY	2 cut(s)	41, 520
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	1407
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	1243
EcoT22I	ATGCAT	1 cut(s)	1417
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	1243
FaeI	CATG	6 cut(s)	700, 955, 1247, 1349, 1419, 1432
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	3 cut(s)	54, 371, 1136
FatI	CATG	6 cut(s)	696, 951, 1243, 1345, 1415, 1428
FblI	GTMKAC	1 cut(s)	968
Fnu4HI	GCNGC	7 cut(s)	120, 184, 187, 300, 327, 654, 1169
FokI	GGATG	6 cut(s)	590, 815, 934, 1229, 1283, 1424
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	7 cut(s)	120, 184, 187, 300, 327, 654, 1169
FspBI	CTAG	4 cut(s)	357, 765, 792, 989
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	7 cut(s)	120, 184, 187, 300, 327, 654, 1169
GsaI	CCCAGC	1 cut(s)	1037
GsuI	CTGGAG	1 cut(s)	1214
HaeIII	GGCC	7 cut(s)	159, 552, 560, 725, 774, 864, 1073
HapII	CCGG	6 cut(s)	156, 512, 517, 775, 869, 1322
HhaI	GCGC	1 cut(s)	706
Hin1II	CATG	6 cut(s)	700, 955, 1247, 1349, 1419, 1432
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	3 cut(s)	259, 969, 1066
HindII	GTYRAC	3 cut(s)	259, 969, 1066
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	4 cut(s)	353, 441, 835, 1282
HpaII	CCGG	6 cut(s)	156, 512, 517, 775, 869, 1322
HphI	GGTGA	3 cut(s)	16, 1028, 1145
Hpy166II	GTNNAC	5 cut(s)	259, 844, 934, 969, 1066
Hpy188I	TCNGA	2 cut(s)	352, 1216
Hpy188III	TCNNGA	9 cut(s)	172, 451, 599, 820, 832, 869, 1003, 1193, 1286
Hpy8I	GTNNAC	5 cut(s)	259, 844, 934, 969, 1066
Hpy99I	CGWCG	2 cut(s)	95, 1340
HpyAV	CCTTC	6 cut(s)	542, 550, 568, 817, 875, 1009
HpyCH4III	ACNGT	6 cut(s)	131, 385, 608, 938, 964, 1340
HpyCH4IV	ACGT	1 cut(s)	225
HpyF3I	CTNAG	3 cut(s)	402, 588, 1079
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	700, 955, 1247, 1349, 1419, 1432
HspAI	GCGC	1 cut(s)	704
Kpn2I	TCCGGA	1 cut(s)	868
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
LmnI	GCTCC	2 cut(s)	287, 1195
Lsp1109I	GCAGC	5 cut(s)	131, 286, 313, 640, 1180
LweI	GCATC	4 cut(s)	956, 1149, 1207, 1402
MaeI	CTAG	4 cut(s)	357, 765, 792, 989
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	131, 730, 1099
MalI	GATC	8 cut(s)	455, 494, 501, 811, 905, 1092, 1115, 1152
MboI	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
MfeI	CAATTG	2 cut(s)	1038, 1395
MflI	RGATCY	4 cut(s)	453, 499, 809, 1113
MhlI	GDGCHC	3 cut(s)	74, 642, 1243
MluCI	AATT	7 cut(s)	417, 446, 470, 691, 1038, 1374, 1395
MlyI	GAGTC	2 cut(s)	347, 1276
MmeI	TCCRAC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	1417
MroI	TCCGGA	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	5 cut(s)	66, 507, 690, 786, 1278
MslI	CAYNNNNRTG	2 cut(s)	67, 212
MspA1I	CMGCKG	3 cut(s)	186, 401, 545
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	6 cut(s)	156, 512, 517, 775, 869, 1322
MspR9I	CCNGG	3 cut(s)	156, 518, 1409
MunI	CAATTG	2 cut(s)	1038, 1395
Mva1269I	GAATGC	3 cut(s)	860, 1254, 1325
MvaI	CCWGG	1 cut(s)	1409
MvnI	CGCG	1 cut(s)	186
NciI	CCSGG	2 cut(s)	156, 518
NcoI	CCATGG	1 cut(s)	1243
NdeII	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
NlaIII	CATG	6 cut(s)	700, 955, 1247, 1349, 1419, 1432
NlaIV	GGNNCC	6 cut(s)	42, 521, 597, 724, 811, 1240
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	1417
NspI	RCATGY	2 cut(s)	1349, 1432
OliI	CACNNNNGTG	2 cut(s)	67, 212
PaqCI	CACCTGC	1 cut(s)	1173
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	3 cut(s)	860, 1254, 1325
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	441, 835
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	627
PkrI	GCNGC	7 cut(s)	121, 185, 188, 301, 328, 655, 1170
Ple19I	CGATCG	1 cut(s)	495
PleI	GAGTC	2 cut(s)	347, 1276
PpsI	GAGTC	2 cut(s)	347, 1276
PpuMI	RGGWCCY	2 cut(s)	41, 520
Psp124BI	GAGCTC	1 cut(s)	642
Psp5II	RGGWCCY	2 cut(s)	41, 520
Psp6I	CCWGG	1 cut(s)	1407
PspEI	GGTNACC	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	1033
PspGI	CCWGG	1 cut(s)	1407
PspN4I	GGNNCC	6 cut(s)	42, 521, 597, 724, 811, 1240
PspPI	GGNCC	6 cut(s)	41, 514, 520, 630, 723, 1108
PspPPI	RGGWCCY	2 cut(s)	41, 520
PstI	CTGCAG	2 cut(s)	304, 1170
PsuI	RGATCY	4 cut(s)	453, 499, 809, 1113
PsyI	GACNNNGTC	1 cut(s)	518
PvuI	CGATCG	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	884, 914
RsaNI	GTAC	2 cut(s)	883, 913
RseI	CAYNNNNRTG	2 cut(s)	67, 212
Rsr2I	CGGWCCG	1 cut(s)	514
RsrII	CGGWCCG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	642
SacII	CCGCGG	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	967
SaqAI	TTAA	5 cut(s)	66, 507, 690, 786, 1278
SatI	GCNGC	7 cut(s)	120, 184, 187, 300, 327, 654, 1169
Sau3AI	GATC	8 cut(s)	453, 492, 499, 809, 903, 1090, 1113, 1150
Sau96I	GGNCC	6 cut(s)	41, 514, 520, 630, 723, 1108
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	2 cut(s)	347, 1276
ScrFI	CCNGG	3 cut(s)	156, 518, 1409
SduI	GDGCHC	3 cut(s)	74, 642, 1243
SfaNI	GCATC	4 cut(s)	956, 1149, 1207, 1402
SfcI	CTRYAG	2 cut(s)	300, 1166
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SinI	GGWCC	5 cut(s)	41, 514, 520, 630, 1108
SmiMI	CAYNNNNRTG	2 cut(s)	67, 212
SmlI	CTYRAG	2 cut(s)	65, 1421
SmoI	CTYRAG	2 cut(s)	65, 1421
Sse9I	AATT	7 cut(s)	417, 446, 470, 691, 1038, 1374, 1395
SsiI	CCGC	6 cut(s)	184, 186, 543, 633, 1094, 1117
SspMI	CTAG	4 cut(s)	357, 765, 792, 989
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	3 cut(s)	154, 516, 1407
StyI	CCWWGG	1 cut(s)	1243
TaaI	ACNGT	6 cut(s)	131, 385, 608, 938, 964, 1340
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	8 cut(s)	162, 380, 495, 968, 1143, 1287, 1335, 1353
TasI	AATT	7 cut(s)	417, 446, 470, 691, 1038, 1374, 1395
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	2 cut(s)	186, 189
TfiI	GAWTC	2 cut(s)	441, 835
Tru1I	TTAA	5 cut(s)	66, 507, 690, 786, 1278
Tru9I	TTAA	5 cut(s)	66, 507, 690, 786, 1278
TscAI	CASTG	7 cut(s)	60, 136, 185, 214, 596, 967, 1267
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	5 cut(s)	119, 299, 326, 653, 1168
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	165, 1318, 1328
TspGWI	ACGGA	2 cut(s)	127, 244
TspRI	CASTG	7 cut(s)	60, 136, 185, 214, 596, 967, 1267
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	627
Vha464I	CTTAAG	1 cut(s)	65
VpaK11BI	GGWCC	5 cut(s)	41, 514, 520, 630, 1108
XagI	CCTNNNNNAGG	2 cut(s)	479, 869
XapI	RAATTY	3 cut(s)	417, 446, 470
XceI	RCATGY	2 cut(s)	1349, 1432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	968
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	4 cut(s)	357, 765, 792, 989
ZrmI	AGTACT	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.