Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0007609

Physical Location & Seq

Genomic Coordinates Forward (+)

344310 .. 345435

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001211.1_g000083.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atggtgaagatctgttgcattggtgctggatatgtcgggggtcctacgatggcagtgattgcactcaagtgcccctctgttgaagttgttgttgttgatcttaatcagaaacggattgatgcttggaacagtgacacacttccaatttatgagcctggtcttgatgatgttgtcaaacagtgccgaggcaagaacctcttcttcagcaccaaggtggatgagagcgtaatggaagctgatatagtgtttgtctctgtcaacaccccaaccaaaacaacgggtcttggagcaggcaaagcagccgatctgacttattgggagagtgctgctcgaatgattgctcgtgtatcaaagtccagcaaaattgttgttgagaaatctacagtcccagtcaaaacagctgaggcaatagaaaagattttgacccacaacaacaaatcagaaatccaattccaaattctctcaaacccagaatttcttgctgagggaactgcaatcgaagacctttttcaccctgatcgtgtcctcattggtggcagggagacccctgaaggccagaaagctgtccaagcattgaaggatgtttatgctcagtgggtgcctgaagacaaaatcctcaccaccaatctttggtctgcagagctctccaagcttgctgccaacgcattcttggcccagagaatttcatctgtcaatgccatgtctgctctttgtgaggctacaggggccaatgttgcacaagtgtcatatgctgttggcaaggatagtaggataggaccaaagttccttaatggtagtgttggttttggtggatcttgcttccagaaggatatcctgaatctggtttacatttgcgaatgcaatggccttccagaggtggcagagtactggaaacaggtcattaagatcaatgattatcagaagagccgttttgtgaaccgtgttgttgcttccatgtttaacacagtgtccaagaagaagattgccattcttggttttgccttcaagaaagatactggtgacactagggagacccccgctattgatgtgtgccaggggttactgaagaccagatcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009664 GO:0009987 GO:0010393 GO:0016043 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0017144 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0030312 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0046394 GO:0046398 GO:0046483 GO:0048046 GO:0052546 GO:0055086 GO:0055114 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

360

Amino Acids

39.24

Weight (kDa)

8.45

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29360 AT3G29360 AT5G15490 AT5G39320
fragaria_vesca	FvH4_7g08190
malus_domestica	MD00G1075000.v1.1 MD15G1316900.v1.1
prunus_persica	Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.3G257300_v2.0.a1 Prupe.7G028000_v2.0.a1
pyrus_communis	pycom01g06430 pycom15g27960
rosa_chinensis	RchiOBHm_Chr1g0340961
rosa_laevigata	RLG00000029054
rosa_multiflora	Rmu_sc0001211.1_g000083 Rmu_sc0002200.1_g000046
rosa_roxburghii	Rroxscaffold_4G00311610
rosa_rugosa	Rorug01G0160500.1
rosa_samantha	Rh1AG175200 Rh1BG143500 Rh1CG163200 Rh1DG175100
rosa_wichuraiana	Rw1G014700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	630
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	1 cut(s)	820
AcsI	RAATTY	3 cut(s)	456, 473, 681
AcuI	CTGAAG	3 cut(s)	187, 570, 624
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
AgsI	TTSAA	3 cut(s)	83, 577, 1006
AjnI	CCWGG	2 cut(s)	154, 1053
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AleI	CACNNNNGTG	2 cut(s)	67, 212
AluBI	AGCT	5 cut(s)	236, 401, 563, 643, 652
AluI	AGCT	5 cut(s)	236, 401, 563, 643, 652
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	256, 536, 1025
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	4 cut(s)	553, 672, 726, 865
ApeKI	GCWGC	3 cut(s)	299, 326, 656
ApoI	RAATTY	3 cut(s)	456, 473, 681
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	4 cut(s)	41, 673, 726, 776
AsuHPI	GGTGA	4 cut(s)	16, 503, 610, 1031
AvaII	GGWCC	2 cut(s)	41, 776
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	645
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	3 cut(s)	507, 612, 1073
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	2 cut(s)	402, 483
BbvI	GCAGC	3 cut(s)	311, 313, 643
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	912
BciT130I	CCWGG	2 cut(s)	156, 1055
BcoDI	GTCTC	3 cut(s)	256, 536, 1025
BfaI	CTAG	1 cut(s)	1026
BfmI	CTRYAG	3 cut(s)	381, 636, 720
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	3 cut(s)	300, 327, 657
BlsI	GCNGC	3 cut(s)	301, 328, 658
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	2 cut(s)	156, 1055
Bme18I	GGWCC	2 cut(s)	41, 776
BmgT120I	GGNCC	4 cut(s)	41, 673, 726, 776
BmiI	GGNNCC	3 cut(s)	42, 600, 727
BmrFI	CCNGG	2 cut(s)	156, 1055
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	383
BpiI	GAAGAC	3 cut(s)	507, 612, 1073
BplI	GAGNNNNNCTC	2 cut(s)	313, 345
Bpu10I	CCTNAGC	2 cut(s)	402, 483
BpuEI	CTTGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	102
BsaI	GGTCTC	2 cut(s)	536, 1025
BsaJI	CCNNGG	3 cut(s)	184, 210, 1054
Bsc4I	CCNNNNNNNGG	3 cut(s)	630, 841, 874
Bse1I	ACTGG	3 cut(s)	389, 893, 1021
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	156, 1055
BseDI	CCNNGG	3 cut(s)	184, 210, 1054
BseGI	GGATG	2 cut(s)	223, 586
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	3 cut(s)	393, 474, 605
BseNI	ACTGG	3 cut(s)	389, 893, 1021
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	311, 313, 643
BshFI	GGCC	4 cut(s)	555, 674, 728, 867
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	630, 841, 874
BsmAI	GTCTC	3 cut(s)	256, 536, 1025
BsmFI	GGGAC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	665, 863
BsnI	GGCC	4 cut(s)	555, 674, 728, 867
Bso31I	GGTCTC	2 cut(s)	536, 1025
Bsp1286I	GDGCHC	2 cut(s)	74, 645
Bsp143I	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	4 cut(s)	555, 674, 728, 867
BspCNI	CTCAG	3 cut(s)	394, 475, 604
BspLI	GGNNCC	3 cut(s)	42, 600, 727
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	820
BspQI	GCTCTTC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	2 cut(s)	536, 1025
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	3 cut(s)	389, 893, 1021
BssECI	CCNNGG	3 cut(s)	184, 210, 1054
BssMI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	156, 1055
Bst4CI	ACNGT	5 cut(s)	131, 180, 385, 941, 967
Bst6I	CTCTTC	2 cut(s)	203, 917
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	292, 654
BstDEI	CTNAG	3 cut(s)	402, 483, 591
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	223, 586
BstKTI	GATC	7 cut(s)	12, 100, 307, 520, 815, 909, 1076
BstMAI	GTCTC	3 cut(s)	256, 536, 1025
BstMBI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
BstMWI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
BstNI	CCWGG	2 cut(s)	156, 1055
BstSCI	CCNGG	2 cut(s)	154, 1053
BstSFI	CTRYAG	3 cut(s)	381, 636, 720
BstSLI	GKGCMC	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	311, 313, 643
BstV2I	GAAGAC	3 cut(s)	507, 612, 1073
BstX2I	RGATCY	2 cut(s)	9, 812
BstYI	RGATCY	2 cut(s)	9, 812
BsuRI	GGCC	4 cut(s)	555, 674, 728, 867
BtsCI	GGATG	2 cut(s)	223, 586
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	5 cut(s)	60, 136, 185, 599, 972
Cac8I	GCNNGC	2 cut(s)	292, 654
Cfr13I	GGNCC	4 cut(s)	41, 673, 726, 776
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	2 cut(s)	700, 955
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	3 cut(s)	402, 483, 591
DpnI	GATC	7 cut(s)	11, 99, 306, 519, 814, 908, 1075
DpnII	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
Eam1104I	CTCTTC	2 cut(s)	203, 917
EarI	CTCTTC	2 cut(s)	203, 917
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	2 cut(s)	536, 1025
Eco32I	GATATC	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	41, 776
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	3 cut(s)	187, 570, 624
EcoICRI	GAGCTC	1 cut(s)	643
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	154, 1053
EcoRV	GATATC	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	703, 958
FaiI	YATR	8 cut(s)	33, 150, 242, 588, 701, 748, 750, 956
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	2 cut(s)	699, 954
FauI	CCCGC	1 cut(s)	1045
FauNDI	CATATG	1 cut(s)	748
Fnu4HI	GCNGC	3 cut(s)	300, 327, 657
FokI	GGATG	2 cut(s)	230, 593
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	3 cut(s)	300, 327, 657
FspBI	CTAG	1 cut(s)	1026
GluI	GCNGC	3 cut(s)	300, 327, 657
HaeIII	GGCC	4 cut(s)	555, 674, 728, 867
Hin1II	CATG	2 cut(s)	703, 958
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	1 cut(s)	838
HphI	GGTGA	4 cut(s)	16, 503, 610, 1031
Hpy166II	GTNNAC	3 cut(s)	259, 847, 937
Hpy188I	TCNGA	4 cut(s)	108, 309, 442, 921
Hpy188III	TCNNGA	6 cut(s)	161, 823, 835, 872, 1006, 1077
Hpy8I	GTNNAC	3 cut(s)	259, 847, 937
HpyAV	CCTTC	5 cut(s)	545, 571, 820, 878, 1012
HpyCH4III	ACNGT	5 cut(s)	131, 180, 385, 941, 967
HpyCH4V	TGCA	6 cut(s)	18, 62, 494, 638, 737, 861
HpyF10VI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
HpyF3I	CTNAG	3 cut(s)	402, 483, 591
Hsp92II	CATG	2 cut(s)	703, 958
Kzo9I	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
LguI	GCTCTTC	1 cut(s)	917
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	311, 313, 643
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	1026
MaeIII	GTNAC	3 cut(s)	131, 1019, 1059
MalI	GATC	7 cut(s)	11, 99, 306, 519, 814, 908, 1075
MboI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
MboII	GAAGA	9 cut(s)	19, 190, 193, 512, 617, 934, 988, 991, 1078
MflI	RGATCY	2 cut(s)	9, 812
MhlI	GDGCHC	2 cut(s)	74, 645
MluCI	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
MnlI	CCTC	9 cut(s)	85, 179, 206, 397, 478, 536, 626, 709, 868
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	4 cut(s)	102, 789, 903, 960
MslI	CAYNNNNRTG	2 cut(s)	67, 212
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	156, 1055
Mva1269I	GAATGC	2 cut(s)	665, 863
MvaI	CCWGG	2 cut(s)	156, 1055
MwoI	GCNNNNNNNGC	9 cut(s)	59, 296, 569, 649, 662, 671, 704, 725, 734
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
NlaIII	CATG	2 cut(s)	703, 958
NlaIV	GGNNCC	3 cut(s)	42, 600, 727
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	131, 1019
OliI	CACNNNNGTG	2 cut(s)	67, 212
PciSI	GCTCTTC	1 cut(s)	917
PctI	GAATGC	2 cut(s)	665, 863
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	838
PflMI	CCANNNNNTGG	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	301, 328, 658
PpuMI	RGGWCCY	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	154, 1053
PspGI	CCWGG	2 cut(s)	154, 1053
PspN4I	GGNNCC	3 cut(s)	42, 600, 727
PspPI	GGNCC	4 cut(s)	41, 673, 726, 776
PspPPI	RGGWCCY	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	9, 812
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	2 cut(s)	67, 212
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	4 cut(s)	102, 789, 903, 960
SatI	GCNGC	3 cut(s)	300, 327, 657
Sau3AI	GATC	7 cut(s)	9, 97, 304, 517, 812, 906, 1073
Sau96I	GGNCC	4 cut(s)	41, 673, 726, 776
ScaI	AGTACT	1 cut(s)	887
ScrFI	CCNGG	2 cut(s)	156, 1055
SduI	GDGCHC	2 cut(s)	74, 645
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	3 cut(s)	381, 636, 720
SinI	GGWCC	2 cut(s)	41, 776
SmiMI	CAYNNNNRTG	2 cut(s)	67, 212
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
SsiI	CCGC	1 cut(s)	1038
SspMI	CTAG	1 cut(s)	1026
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	154, 1053
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	5 cut(s)	131, 180, 385, 941, 967
TaqI	TCGA	2 cut(s)	331, 498
TasI	AATT	6 cut(s)	144, 363, 449, 456, 473, 681
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	838
Tru1I	TTAA	4 cut(s)	102, 789, 903, 960
Tru9I	TTAA	4 cut(s)	102, 789, 903, 960
TscAI	CASTG	5 cut(s)	60, 136, 185, 599, 972
TseFI	GTSAC	2 cut(s)	131, 1019
TseI	GCWGC	3 cut(s)	299, 326, 656
Tsp45I	GTSAC	2 cut(s)	131, 1019
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	5 cut(s)	60, 136, 185, 599, 972
Van91I	CCANNNNNTGG	1 cut(s)	630
VpaK11BI	GGWCC	2 cut(s)	41, 776
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	3 cut(s)	456, 473, 681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	1026
ZrmI	AGTACT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.