Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009877

Physical Location & Seq

Genomic Coordinates Forward (+)

15942764 .. 15945897

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCAGGTAATAGCATCTTTCTGTTCGAAACCTAATGAGAATGAATTTGTTGGTCGACGACAACTTCTTTCTTCAGTCTGTTCCAAAATTTCTCAAGGCGACGTCGTTTCACACCCACCCGTTTCTTCTGTCAAGGTTACTCAAGATTGGAAGTCGAATTTACATGAGTTAGCTGTGAAAAGTGTCCCTTCGACGACAAGGAGAATCTTGTTGACAAGTTTATTCATGAATTTGTGCTTTAATCCTTCAAGGTACTTATCAGCCTTAGCACTTGGTGATCCATCCGTTGCAACCGTTGAAGATGTTAGTCCAACTGTTTTCCCAGCTGGACCTCTTTTCCCTACTGAGGGGAGAATTGTGCAACTGTTTGAGAAGAATACTTATTCCGTTGTCAACATCTTTGATGTGACATTACGGCCTCAGCTCAAAATGACGGGTGTGGTTGAGATACCAGAAGGAAATGGCTCTGGAGTAGTCTGGGACGGACAAGGATACATCGTGACCAATTATCACGTTATTGGCAATGCCCTTTCAAGAAATCCTAGCCCCGGGGATGTAGTTGGTCGTGTGAATATTCTGGCATCTGATGGGGTACAGAAGAACTTTGAAGGAAAACTTGTTGGTGCTGATCGTGCTAAGGATCTTGCTGTCTTGAAGGTGGATGCTCCCGAAACTCTCCTGAAACCGATTAAAGTTGGGCAGTCAAATTCTCTAAAGGTTGGACAGCAGTGTTTAGCAATTGGAAACCCGTTTGGTTTTGACCACACTCTTACGGTTGGTGTCATCAGCGGTCTTAACCGTGACATATTTAGTCAAACTGGAGTTACCATTGGTGGTGGAATTCAAACTGATGCTGCCATTAACCCGGGAAATAGCGGAGGTCCTCTGCTCGATTCAAAAGGGAACTTGATTGGGATCAACACGGCCATTTTCACACAGACAGGAACATCTGCGGGTGTTGGATTTGCTATTCCGTCATCAACAGTATTAAAGATTGTTCCTCAACTAATACAATTCAGCAAAGTCCTTCGAGCTGGTATTAACATAGAATTAGCCCCTGATCCAGTAGCTAATCAACTCAATGTTCGTAATGGAGCCCTTGTCCTTCAGGTACCGGGTAAGAGTCTAGCGGAAAAAGCAGGATTACATCCGACATCCCGGGGTTTTGCTGGTAATATAGTGCTTGGAGATATCATTGTTGCAGTTGATGACAAACCTGTGAAGAACAAAGCCGAGTTGATGAAGATATTGGATGAGTACAGTGTAGGTGATAAGGTGACACTTAAGATTAAGAGAGGAAATGAAGATTTGGAGTTAAAGATCTCATTGGAAGAGAAAAGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016787 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

448

Amino Acids

47.49

Weight (kDa)

8.52

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	155 - 306	4e-30	Trypsin-like peptidase domain
Trypsin	PF00089	156 - 332	1.5e-18	Trypsin
PDZ_2	PF13180	362 - 443	4.2e-11	PDZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39830 AT5G39830
fragaria_vesca	FvH4_6g48710 FvH4_6g48710 FvH4_6g48710 FvH4_6g48710
malus_domestica	MD09G1050500.v1.1
prunus_persica	Prupe.3G268300_v2.0.a1 Prupe.3G268300_v2.0.a1
pyrus_communis	pycom111g04160
rosa_chinensis	RchiOBHm_Chr2g0168631
rosa_laevigata	RLG00000021792
rosa_multiflora	Rmu_sc0002416.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082830
rosa_rugosa	Rorug02G0534300 Rorug02G0534300
rosa_samantha	Rh2AG604900 Rh2BG617900 Rh2CG586100 Rh2DG628500
rosa_wichuraiana	Rw2G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	1111
AccB1I	GGYRCC	1 cut(s)	1111
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	4 cut(s)	789, 876, 953, 1130
AclWI	GGATC	4 cut(s)	272, 648, 923, 1055
AcoI	YGGCCR	1 cut(s)	924
AcsI	RAATTY	6 cut(s)	44, 87, 157, 229, 706, 840
AcuI	CTGAAG	2 cut(s)	57, 1091
AcyI	GRCGYC	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	275
AfaI	GTAC	4 cut(s)	254, 594, 1113, 1259
AfiI	CCNNNNNNNGG	3 cut(s)	346, 347, 548
AflII	CTTAAG	1 cut(s)	1283
AgsI	TTSAA	7 cut(s)	249, 299, 534, 608, 655, 845, 897
AluBI	AGCT	5 cut(s)	173, 326, 424, 1034, 1070
AluI	AGCT	5 cut(s)	173, 326, 424, 1034, 1070
AlwI	GGATC	4 cut(s)	272, 648, 923, 1055
Ama87I	CYCGRG	3 cut(s)	548, 865, 1158
AoxI	GGCC	2 cut(s)	416, 924
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	6 cut(s)	44, 87, 157, 229, 706, 840
Asp718I	GGTACC	1 cut(s)	1111
AspS9I	GGNCC	2 cut(s)	329, 881
AsuC2I	CCSGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
AsuHPI	GGTGA	3 cut(s)	287, 1280, 1288
AsuII	TTCGAA	1 cut(s)	26
AvaI	CYCGRG	3 cut(s)	548, 865, 1158
AvaII	GGWCC	2 cut(s)	329, 881
BanI	GGYRCC	1 cut(s)	1111
BanII	GRGCYC	1 cut(s)	1099
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	2 cut(s)	289, 581
BceAI	ACGGC	2 cut(s)	431, 939
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
BfaI	CTAG	2 cut(s)	543, 1127
BfrI	CTTAAG	1 cut(s)	1283
BfuI	GTATCC	1 cut(s)	485
BglII	AGATCT	1 cut(s)	1320
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme1390I	CCNGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
Bme18I	GGWCC	2 cut(s)	329, 881
BmeT110I	CYCGRG	3 cut(s)	548, 865, 1158
BmgT120I	GGNCC	2 cut(s)	329, 881
BmiI	GGNNCC	2 cut(s)	1096, 1113
BmrFI	CCNGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
BmsI	GCATC	4 cut(s)	23, 590, 652, 841
BpmI	CTGGAG	2 cut(s)	489, 840
Bpu10I	CCTNAGC	3 cut(s)	265, 420, 636
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	78, 126
BpuMI	CCSGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
BsaBI	GATNNNNATC	1 cut(s)	914
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	6 cut(s)	547, 548, 549, 865, 1158, 1159
BsaXI	ACNNNNNCTCC	2 cut(s)	1086, 1116
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 347, 548
Bse1I	ACTGG	2 cut(s)	823, 1064
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	914
BseDI	CCNNGG	6 cut(s)	547, 548, 549, 865, 1158, 1159
BseGI	GGATG	6 cut(s)	281, 559, 667, 1147, 1154, 1258
BseJI	GATNNNNATC	1 cut(s)	914
BseLI	CCNNNNNNNGG	3 cut(s)	346, 347, 548
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	336, 434
BseNI	ACTGG	2 cut(s)	823, 1064
BseXI	GCAGC	1 cut(s)	841
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	2 cut(s)	418, 926
BshNI	GGYRCC	1 cut(s)	1111
BsiHKCI	CYCGRG	3 cut(s)	548, 865, 1158
BsiSI	CCGG	4 cut(s)	549, 866, 1115, 1159
BslFI	GGGAC	2 cut(s)	170, 494
BslI	CCNNNNNNNGG	3 cut(s)	346, 347, 548
BsmFI	GGGAC	2 cut(s)	170, 494
BsnI	GGCC	2 cut(s)	418, 926
BsoBI	CYCGRG	3 cut(s)	548, 865, 1158
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	1099
Bsp143I	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
BspACI	CCGC	4 cut(s)	789, 876, 953, 1130
BspANI	GGCC	2 cut(s)	418, 926
BspCNI	CTCAG	2 cut(s)	337, 433
BspHI	TCATGA	2 cut(s)	225, 1343
BspLI	GGNNCC	2 cut(s)	1096, 1113
BspPI	GGATC	4 cut(s)	272, 648, 923, 1055
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	1111
BspTI	CTTAAG	1 cut(s)	1283
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	823, 1064
BssECI	CCNNGG	6 cut(s)	547, 548, 549, 865, 1158, 1159
BssMI	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
BssNI	GRCGYC	1 cut(s)	102
Bst4CI	ACNGT	7 cut(s)	295, 316, 366, 775, 800, 985, 1262
Bst6I	CTCTTC	1 cut(s)	1326
BstACI	GRCGYC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	1283
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	265, 345, 420, 636
BstF5I	GGATG	6 cut(s)	281, 559, 667, 1147, 1154, 1258
BstKTI	GATC	6 cut(s)	280, 631, 643, 918, 1063, 1323
BstMBI	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 1136
BstSCI	CCNGG	7 cut(s)	547, 548, 864, 865, 1114, 1157, 1158
BstV1I	GCAGC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	640, 1320
BstYI	RGATCY	2 cut(s)	640, 1320
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	418, 926
BtsCI	GGATG	6 cut(s)	281, 559, 667, 1147, 1154, 1258
BtsI	GCAGTG	1 cut(s)	734
BtsIMutI	CAGTG	2 cut(s)	734, 1267
CciI	TCATGA	2 cut(s)	225, 1343
Cfr13I	GGNCC	2 cut(s)	329, 881
Cfr9I	CCCGGG	3 cut(s)	548, 865, 1158
Csp6I	GTAC	4 cut(s)	253, 593, 1112, 1258
CviAII	CATG	3 cut(s)	164, 226, 1344
CviQI	GTAC	4 cut(s)	253, 593, 1112, 1258
DdeI	CTNAG	4 cut(s)	265, 345, 420, 636
DpnI	GATC	6 cut(s)	279, 630, 642, 917, 1062, 1322
DpnII	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
DraIII	CACNNNGTG	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	1326
EarI	CTCTTC	1 cut(s)	1326
Eco24I	GRGCYC	1 cut(s)	1099
Eco32I	GATATC	1 cut(s)	1192
Eco47I	GGWCC	2 cut(s)	329, 881
Eco57I	CTGAAG	2 cut(s)	57, 1091
Eco88I	CYCGRG	3 cut(s)	548, 865, 1158
EcoO109I	RGGNCCY	1 cut(s)	881
EcoRI	GAATTC	1 cut(s)	840
EcoRV	GATATC	1 cut(s)	1192
EcoT38I	GRGCYC	1 cut(s)	1099
FaeI	CATG	3 cut(s)	167, 229, 1347
FaiI	YATR	6 cut(s)	165, 227, 806, 1046, 1178, 1345
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 600, 632
FaqI	GGGAC	2 cut(s)	170, 494
FatI	CATG	3 cut(s)	163, 225, 1343
FauI	CCCGC	1 cut(s)	946
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	855
FokI	GGATG	6 cut(s)	268, 566, 674, 1134, 1141, 1265
FriOI	GRGCYC	1 cut(s)	1099
Fsp4HI	GCNGC	1 cut(s)	855
FspBI	CTAG	2 cut(s)	543, 1127
GluI	GCNGC	1 cut(s)	855
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	2 cut(s)	489, 840
HaeIII	GGCC	2 cut(s)	418, 926
HapII	CCGG	4 cut(s)	549, 866, 1115, 1159
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	167, 229, 1347
HincII	GTYRAC	3 cut(s)	56, 213, 394
HindII	GTYRAC	3 cut(s)	56, 213, 394
HinfI	GANTC	3 cut(s)	204, 893, 1123
HpaII	CCGG	4 cut(s)	549, 866, 1115, 1159
HphI	GGTGA	3 cut(s)	287, 1280, 1288
Hpy166II	GTNNAC	3 cut(s)	56, 213, 394
Hpy188I	TCNGA	2 cut(s)	586, 1152
Hpy188III	TCNNGA	9 cut(s)	143, 226, 468, 499, 534, 652, 668, 679, 1344
Hpy8I	GTNNAC	3 cut(s)	56, 213, 394
Hpy99I	CGWCG	4 cut(s)	60, 104, 107, 196
HpyAV	CCTTC	7 cut(s)	198, 255, 449, 602, 649, 1037, 1115
HpyCH4III	ACNGT	7 cut(s)	295, 316, 366, 775, 800, 985, 1262
HpyCH4IV	ACGT	2 cut(s)	102, 513
HpyCH4V	TGCA	4 cut(s)	4, 290, 361, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 1136
HpyF3I	CTNAG	4 cut(s)	265, 345, 420, 636
HpySE526I	ACGT	2 cut(s)	102, 513
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	167, 229, 1347
KpnI	GGTACC	1 cut(s)	1115
Kzo9I	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
LmnI	GCTCC	2 cut(s)	670, 1094
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	4 cut(s)	23, 590, 652, 841
MaeI	CTAG	2 cut(s)	543, 1127
MaeII	ACGT	2 cut(s)	102, 513
MaeIII	GTNAC	6 cut(s)	136, 406, 499, 800, 823, 1276
MalI	GATC	6 cut(s)	279, 630, 642, 917, 1062, 1322
MboI	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
MboII	GAAGA	9 cut(s)	63, 117, 311, 385, 610, 1234, 1255, 1316, 1343
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	2 cut(s)	640, 1320
MhlI	GDGCHC	1 cut(s)	1099
MlyI	GAGTC	1 cut(s)	1132
MmeI	TCCRAC	4 cut(s)	335, 700, 940, 1175
MnlI	CCTC	7 cut(s)	340, 342, 429, 872, 894, 1011, 1289
MseI	TTAA	9 cut(s)	240, 690, 795, 861, 989, 1041, 1284, 1290, 1316
MspA1I	CMGCKG	2 cut(s)	326, 789
MspCI	CTTAAG	1 cut(s)	1283
MspI	CCGG	4 cut(s)	549, 866, 1115, 1159
MspR9I	CCNGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
MunI	CAATTG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	632, 1136
NciI	CCSGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
NdeII	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
NlaIII	CATG	3 cut(s)	167, 229, 1347
NlaIV	GGNNCC	2 cut(s)	1096, 1113
NmeAIII	GCCGAG	1 cut(s)	1258
NmuCI	GTSAC	4 cut(s)	406, 499, 800, 1276
NspV	TTCGAA	1 cut(s)	26
PagI	TCATGA	2 cut(s)	225, 1343
PfeI	GAWTC	2 cut(s)	204, 893
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	1 cut(s)	1131
PpsI	GAGTC	1 cut(s)	1131
PpuMI	RGGWCCY	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	881
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	1096, 1113
PspPI	GGNCC	2 cut(s)	329, 881
PspPPI	RGGWCCY	1 cut(s)	881
PsuI	RGATCY	2 cut(s)	640, 1320
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	254, 594, 1113, 1259
RsaNI	GTAC	4 cut(s)	253, 593, 1112, 1258
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	9 cut(s)	240, 690, 795, 861, 989, 1041, 1284, 1290, 1316
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	6 cut(s)	277, 628, 640, 915, 1060, 1320
Sau96I	GGNCC	2 cut(s)	329, 881
SchI	GAGTC	1 cut(s)	1132
ScrFI	CCNGG	7 cut(s)	549, 550, 866, 867, 1116, 1159, 1160
SduI	GDGCHC	1 cut(s)	1099
SfaNI	GCATC	4 cut(s)	23, 590, 652, 841
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	2 cut(s)	329, 881
SmaI	CCCGGG	3 cut(s)	550, 867, 1160
SmlI	CTYRAG	3 cut(s)	93, 141, 1283
SmoI	CTYRAG	3 cut(s)	93, 141, 1283
SsiI	CCGC	4 cut(s)	789, 876, 953, 1130
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	2 cut(s)	543, 1127
StyD4I	CCNGG	7 cut(s)	547, 548, 864, 865, 1114, 1157, 1158
TaaI	ACNGT	7 cut(s)	295, 316, 366, 775, 800, 985, 1262
TaiI	ACGT	2 cut(s)	105, 516
TaqI	TCGA	6 cut(s)	26, 55, 155, 191, 891, 1030
TatI	WGTACW	1 cut(s)	1257
TfiI	GAWTC	2 cut(s)	204, 893
Tru1I	TTAA	9 cut(s)	240, 690, 795, 861, 989, 1041, 1284, 1290, 1316
Tru9I	TTAA	9 cut(s)	240, 690, 795, 861, 989, 1041, 1284, 1290, 1316
TscAI	CASTG	2 cut(s)	734, 1267
TseFI	GTSAC	4 cut(s)	406, 499, 800, 1276
TseI	GCWGC	1 cut(s)	854
Tsp45I	GTSAC	4 cut(s)	406, 499, 800, 1276
TspDTI	ATGAA	6 cut(s)	57, 214, 242, 1256, 1317, 1332
TspGWI	ACGGA	4 cut(s)	274, 376, 498, 963
TspMI	CCCGGG	3 cut(s)	548, 865, 1158
TspRI	CASTG	2 cut(s)	734, 1267
Vha464I	CTTAAG	1 cut(s)	1283
VpaK11BI	GGWCC	2 cut(s)	329, 881
XapI	RAATTY	6 cut(s)	44, 87, 157, 229, 706, 840
XmaI	CCCGGG	3 cut(s)	548, 865, 1158
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	2 cut(s)	543, 1127
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.