Rorug02G0534300

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003612
Physical Location & Seq
Forward (+)
66350079 .. 66353639
3561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0534300.1

Sequence Viewer

Length: 1320 bp
ATGAGGCCATGTGAATTATGTTGGCGGGCGAGTGCGCTTGTTTACTGCAGAGCAGATATGGCTCGCCTTTGCTTAAACTGTGATGGATCTGTACACTCAGCCAATGCGTTAGCGCGAAGGCACTCACGTTGGTTTCTATGTGACAAGTGCAATGATCAGCCTGCAACAGTTCGATGCCTGGATGAGAACATGTCCTTGTGCCAAAGTTGTGAGTGGAATCACAATAATGGGGTTACAGGAATGGGGCACCGTAACCAAGCAATAAGTTGCTATACGGGCTGTCCGTCTTTGTCTGAGATTTCGAGAATTTGGTCTGCGGTCCTTGAAGGGGGTTCAGCTTCTGGTGGTTTTGGTGGCAGTGCTTGGGAGTCACTTGGGGGTTCGGTGATGCCAAAGAATGAGAATAATTGCATTAGTAACTGTTTGGAGCGTAGAGATAGTGAGGCATCTTCGTTTGGGGTAGTGAGTGCTGGCAAGTTGAATGAAGTACTAGCAGAGTCTAATTGTACTCCCAAGTTTGAGCCGTGGATGGCCCCATCTACTATGATTCCATCAAATCCGAACTGCATCCAGCCACAATGCAAAGATCAAGCACCATTCTTGCCTCAGGAGTCGAGCCAGATGCCAAAGGATGGCAATGATCTATGTGAAGGTCTCAACATGGATGATGTTCCACTAGACGTTGAAAATGACGATGAGCTATTTAGCTGCTCACAAGGTCCATCCAGATACTCCTTTGAGGATGGAGAGTTGGACTGTCTATTAATGGACCAGAAAAACTTATCAGTCACCGAGTCTAATGGTCCTCACAGTGACAATGCTATACAACAGGCATCACCATCAAGACAACAAGACTGTACCGTGGGATTTCACTCATCCTGTGTGTCAGATAGTGTGATGCCCCCAGTGATGAATGCTGGTAGCACTGTAAACTGCAGCCTGCTCATGAATCCTAGTTGCAGCAGAAACATCAATCTGGAGGGATTAATTAATCCTACTGGTCAAGTTCATTCAAGCATATCACTATCACTATCCAGCATCACAAGAGATACAACTCATCCAGATTATCAAGATTGCGGACTGTCACCCGTCTTTCTATCAGCAGAACCTTGGGACTCTACTTTGGAGACCAGCAGTCCACGCGCAAGGGACAAAGCTAAGATGAGATATGAGGAAAAAAAGAAAACTCGCACGTTTGGTAAACAAATAAGGTATGCCTCTAGAAAGGCTAGAGCTGATACCAGAAAACGAGTCAAGGGAAGATTCGTAAAATCCGGTGAAGAATATGATTACGATCCTCTTGTGAGACGGAGCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

439

Amino Acids

48.34

Weight (kDa)

5.51

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANCHR-like_BBOX PF22586 46 - 83 2.1e-06 ANCHR-like B-box zinc-binding domain
CCT PF06203 383 - 425 6.2e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 632
AccII CGCG 2 cut(s) 115, 1143
AciI CCGC 3 cut(s) 25, 317, 1077
AclWI GGATC 2 cut(s) 94, 1289
AcsI RAATTY 1 cut(s) 306
AfaI GTAC 4 cut(s) 93, 489, 508, 859
AfiI CCNNNNNNNGG 2 cut(s) 328, 632
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 4 cut(s) 326, 481, 686, 1014
AhdI GACNNNNNGTC 1 cut(s) 1134
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 6 cut(s) 338, 700, 708, 1157, 1235, 1314
AluI AGCT 6 cut(s) 338, 700, 708, 1157, 1235, 1314
Alw26I GTCTC 3 cut(s) 659, 1121, 1300
AlwI GGATC 2 cut(s) 94, 1289
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 2 cut(s) 5, 531
ApeKI GCWGC 3 cut(s) 708, 936, 960
ApoI RAATTY 1 cut(s) 306
AseI ATTAAT 3 cut(s) 764, 986, 990
AspLEI GCGC 3 cut(s) 37, 115, 1145
AspS9I GGNCC 5 cut(s) 319, 532, 719, 769, 803
AsuHPI GGTGA 5 cut(s) 397, 781, 828, 1077, 1289
AvaII GGWCC 4 cut(s) 319, 719, 769, 803
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 695, 948, 972
BccI CCATC 8 cut(s) 77, 523, 544, 559, 626, 730, 737, 847
BceAI ACGGC 1 cut(s) 508
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 659, 1121, 1300
BfaI CTAG 5 cut(s) 491, 677, 954, 1221, 1230
BfmI CTRYAG 2 cut(s) 46, 934
BisI GCNGC 3 cut(s) 709, 937, 961
BlsI GCNGC 3 cut(s) 710, 938, 962
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 4 cut(s) 319, 719, 769, 803
BmeRI GACNNNNNGTC 1 cut(s) 1134
BmgT120I GGNCC 5 cut(s) 319, 532, 719, 769, 803
BmiI GGNNCC 2 cut(s) 248, 534
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 8 cut(s) 164, 378, 455, 576, 612, 842, 888, 1047
BmuI ACTGGG 1 cut(s) 899
BpmI CTGGAG 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 1293
BsaI GGTCTC 2 cut(s) 659, 1121
BsaJI CCNNGG 3 cut(s) 524, 861, 1109
BsaWI WCCGGW 1 cut(s) 1274
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 632
Bse1I ACTGG 2 cut(s) 905, 1003
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 157, 643
Bse8I GATNNNNATC 1 cut(s) 1293
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 524, 861, 1109
BseGI GGATG 9 cut(s) 187, 534, 567, 637, 670, 722, 748, 875, 1057
BseJI GATNNNNATC 1 cut(s) 1293
BseLI CCNNNNNNNGG 2 cut(s) 328, 632
BseMI GCAATG 2 cut(s) 157, 643
BseMII CTCAG 3 cut(s) 111, 285, 620
BseNI ACTGG 2 cut(s) 905, 1003
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 3 cut(s) 695, 948, 972
Bsh1236I CGCG 2 cut(s) 115, 1143
BshFI GGCC 2 cut(s) 7, 533
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 1275
BslFI GGGAC 2 cut(s) 1127, 1163
BslI CCNNNNNNNGG 2 cut(s) 328, 632
BsmAI GTCTC 3 cut(s) 659, 1121, 1300
BsmBI CGTCTC 1 cut(s) 1300
BsmFI GGGAC 2 cut(s) 1127, 1163
BsmI GAATGC 1 cut(s) 919
BsnI GGCC 2 cut(s) 7, 533
Bso31I GGTCTC 2 cut(s) 659, 1121
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 5 cut(s) 86, 154, 586, 640, 1294
BspACI CCGC 3 cut(s) 25, 317, 1077
BspANI GGCC 2 cut(s) 7, 533
BspCNI CTCAG 3 cut(s) 110, 286, 619
BspFNI CGCG 2 cut(s) 115, 1143
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 248, 534
BspMAI CTGCAG 2 cut(s) 50, 938
BspPI GGATC 2 cut(s) 94, 1289
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 2 cut(s) 659, 1121
BsrDI GCAATG 2 cut(s) 157, 643
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 905, 1003
BssECI CCNNGG 3 cut(s) 524, 861, 1109
BssMI GATC 5 cut(s) 86, 154, 586, 640, 1294
BssT1I CCWWGG 1 cut(s) 1109
Bst2UI CCWGG 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 5 cut(s) 27, 64, 162, 472, 941
BstDEI CTNAG 4 cut(s) 97, 294, 606, 1158
BstDSI CCRYGG 2 cut(s) 524, 861
BstF5I GGATG 9 cut(s) 187, 534, 567, 637, 670, 722, 748, 875, 1057
BstFNI CGCG 2 cut(s) 115, 1143
BstHHI GCGC 3 cut(s) 37, 115, 1145
BstKTI GATC 5 cut(s) 89, 157, 589, 643, 1297
BstMAI GTCTC 3 cut(s) 659, 1121, 1300
BstMBI GATC 5 cut(s) 86, 154, 586, 640, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 59, 276, 1140
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 46, 934
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 2 cut(s) 115, 1143
BstV1I GCAGC 3 cut(s) 695, 948, 972
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 2 cut(s) 7, 533
BtgI CCRYGG 2 cut(s) 524, 861
BtsCI GGATG 9 cut(s) 187, 534, 567, 637, 670, 722, 748, 875, 1057
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 4 cut(s) 364, 817, 912, 924
Cac8I GCNNGC 5 cut(s) 27, 64, 162, 472, 941
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 945
CfoI GCGC 3 cut(s) 37, 115, 1145
Cfr13I GGNCC 5 cut(s) 319, 532, 719, 769, 803
Csp6I GTAC 4 cut(s) 92, 488, 507, 858
CviAII CATG 4 cut(s) 9, 190, 661, 946
CviQI GTAC 4 cut(s) 92, 488, 507, 858
DdeI CTNAG 4 cut(s) 97, 294, 606, 1158
DpnI GATC 5 cut(s) 88, 156, 588, 642, 1296
DpnII GATC 5 cut(s) 86, 154, 586, 640, 1294
DriI GACNNNNNGTC 1 cut(s) 1134
Eam1105I GACNNNNNGTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 1109
Eco31I GGTCTC 2 cut(s) 659, 1121
Eco47I GGWCC 4 cut(s) 319, 719, 769, 803
Eco81I CCTNAGG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 1109
ErhI CCWWGG 1 cut(s) 1109
Esp3I CGTCTC 1 cut(s) 1300
FaeI CATG 4 cut(s) 12, 193, 664, 949
FaqI GGGAC 2 cut(s) 1127, 1163
FatI CATG 4 cut(s) 8, 189, 660, 945
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 709, 937, 961
FokI GGATG 9 cut(s) 194, 541, 554, 644, 677, 709, 755, 862, 1044
Fsp4HI GCNGC 3 cut(s) 709, 937, 961
FspBI CTAG 5 cut(s) 491, 677, 954, 1221, 1230
GlaI GCGC 3 cut(s) 36, 114, 1144
GluI GCNGC 3 cut(s) 709, 937, 961
GsuI CTGGAG 1 cut(s) 998
HaeIII GGCC 2 cut(s) 7, 533
HapII CCGG 1 cut(s) 1275
HhaI GCGC 3 cut(s) 37, 115, 1145
Hin1II CATG 4 cut(s) 12, 193, 664, 949
Hin6I GCGC 3 cut(s) 35, 113, 1143
HinP1I GCGC 3 cut(s) 35, 113, 1143
HpaII CCGG 1 cut(s) 1275
HphI GGTGA 5 cut(s) 397, 781, 828, 1077, 1289
Hpy166II GTNNAC 5 cut(s) 43, 94, 931, 1139, 1202
Hpy188I TCNGA 4 cut(s) 295, 561, 889, 1319
Hpy188III TCNNGA 9 cut(s) 303, 608, 726, 843, 946, 977, 1061, 1070, 1221
Hpy8I GTNNAC 5 cut(s) 43, 94, 931, 1139, 1202
HpyAV CCTTC 3 cut(s) 111, 320, 644
HpyCH4IV ACGT 3 cut(s) 127, 681, 1193
HpyCH4V TGCA 8 cut(s) 48, 150, 164, 411, 567, 582, 936, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 276, 1140
HpyF3I CTNAG 4 cut(s) 97, 294, 606, 1158
HpySE526I ACGT 3 cut(s) 127, 681, 1193
Hsp92II CATG 4 cut(s) 12, 193, 664, 949
HspAI GCGC 3 cut(s) 35, 113, 1143
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 5 cut(s) 86, 154, 586, 640, 1294
LmnI GCTCC 2 cut(s) 427, 1311
Lsp1109I GCAGC 3 cut(s) 695, 948, 972
LweI GCATC 8 cut(s) 164, 378, 455, 576, 612, 842, 888, 1047
MaeI CTAG 5 cut(s) 491, 677, 954, 1221, 1230
MaeII ACGT 3 cut(s) 127, 681, 1193
MaeIII GTNAC 8 cut(s) 140, 232, 251, 369, 416, 787, 812, 1083
MalI GATC 5 cut(s) 88, 156, 588, 642, 1296
MboI GATC 5 cut(s) 86, 154, 586, 640, 1294
MboII GAAGA 3 cut(s) 441, 1272, 1292
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 14, 306, 406, 502, 987
MlyI GAGTC 6 cut(s) 377, 506, 620, 803, 1109, 1260
MmeI TCCRAC 1 cut(s) 732
MnlI CCTC 8 cut(s) 436, 615, 733, 816, 973, 1165, 1228, 1308
MseI TTAA 4 cut(s) 74, 764, 986, 990
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 1275
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 919
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 2 cut(s) 115, 1143
MwoI GCNNNNNNNGC 3 cut(s) 59, 276, 1140
NdeII GATC 5 cut(s) 86, 154, 586, 640, 1294
NlaIII CATG 4 cut(s) 12, 193, 664, 949
NlaIV GGNNCC 2 cut(s) 248, 534
NmuCI GTSAC 5 cut(s) 140, 369, 787, 812, 1083
NspI RCATGY 1 cut(s) 193
PacI TTAATTAA 1 cut(s) 990
PagI TCATGA 1 cut(s) 945
PciI ACATGT 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 4 cut(s) 217, 547, 949, 1263
PflMI CCANNNNNTGG 1 cut(s) 632
PkrI GCNGC 3 cut(s) 710, 938, 962
PleI GAGTC 6 cut(s) 376, 505, 619, 802, 1109, 1259
PpsI GAGTC 6 cut(s) 376, 505, 619, 802, 1109, 1259
PscI ACATGT 1 cut(s) 189
PshBI ATTAAT 3 cut(s) 764, 986, 990
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 248, 534
PspPI GGNCC 5 cut(s) 319, 532, 719, 769, 803
PstI CTGCAG 2 cut(s) 50, 938
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 86
RsaI GTAC 4 cut(s) 93, 489, 508, 859
RsaNI GTAC 4 cut(s) 92, 488, 507, 858
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 4 cut(s) 74, 764, 986, 990
SatI GCNGC 3 cut(s) 709, 937, 961
Sau3AI GATC 5 cut(s) 86, 154, 586, 640, 1294
Sau96I GGNCC 5 cut(s) 319, 532, 719, 769, 803
ScaI AGTACT 1 cut(s) 489
SchI GAGTC 6 cut(s) 377, 506, 620, 803, 1109, 1260
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 8 cut(s) 164, 378, 455, 576, 612, 842, 888, 1047
SfcI CTRYAG 2 cut(s) 46, 934
SinI GGWCC 4 cut(s) 319, 719, 769, 803
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 5 cut(s) 14, 306, 406, 502, 987
SsiI CCGC 3 cut(s) 25, 317, 1077
SspMI CTAG 5 cut(s) 491, 677, 954, 1221, 1230
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 1109
TaiI ACGT 3 cut(s) 130, 684, 1196
TaqI TCGA 3 cut(s) 172, 302, 614
TasI AATT 5 cut(s) 14, 306, 406, 502, 987
TatI WGTACW 3 cut(s) 91, 487, 506
TfiI GAWTC 4 cut(s) 217, 547, 949, 1263
Tru1I TTAA 4 cut(s) 74, 764, 986, 990
Tru9I TTAA 4 cut(s) 74, 764, 986, 990
TscAI CASTG 4 cut(s) 364, 817, 912, 931
TseFI GTSAC 5 cut(s) 140, 369, 787, 812, 1083
TseI GCWGC 3 cut(s) 708, 936, 960
Tsp45I GTSAC 5 cut(s) 140, 369, 787, 812, 1083
TspDTI ATGAA 4 cut(s) 498, 926, 962, 998
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 4 cut(s) 364, 817, 912, 931
Van91I CCANNNNNTGG 1 cut(s) 632
VpaK11BI GGWCC 4 cut(s) 319, 719, 769, 803
VspI ATTAAT 3 cut(s) 764, 986, 990
XapI RAATTY 1 cut(s) 306
XbaI TCTAGA 1 cut(s) 1220
XceI RCATGY 1 cut(s) 193
XspI CTAG 5 cut(s) 491, 677, 954, 1221, 1230
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.