AT5G39840

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003612
Physical Location & Seq
Forward (+)
15946566 .. 15949422
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39840.1

Sequence Viewer

Length: 2331 bp
ATGGCGAGAGGCGTAGCTGGAGTTTTGCGTAGAGCCTATAGTTCAAGAGTTACGGTTCTATTCTCGACACGAAATTTACATTCTTTTAGAGAATCTGAGTCTAGATCTCTTTGTAATTCTGATTTTGATGTGCCCACGAACCGGTTTTGTTCGGGTAATCGGGTTCGGATTCAGTTTCCATGGAATGATTACAGATTTGGGTGCTTTGAGATTGGTAAAGTTAGGAGCTTTTCGTCTACTGTGGATAATAACGGCGAAAATGATGATATTGAAGAAAGTGTTGGTTCTGAGAGTGATGATTATGATGAGGAAGGTTTGATTAATGAACTTAGTGATGTAGATGAAGGCTTGTTGAATGATTCAGTGGTTGCTGAGACGGATGAGATTGGTAGCGAGGCTGCTCGTGCTTTGAACGATCGGTATCATGATCCTGTGGAGTTGTACAGGGAGCTTAGGGGAAGTGAAGTGCGTTCTAAGCTTCAGCATAGTGAATGGGATAGTCTACATGAGATTTTCGGGTTTTTTGCGCAGTCGGGATGGGCGGCTAATCAGGCTCTTGCAATCTATATCGGGAAATCGTTTTTCCCAACTGCTGTTAGCAAGTTTAGGGACTTCTTCATTGAGAAATGTGGAATTGAGGTTGTTCAGGATCTTGTTCGTGTTGGGCCAACTGATGTAGCTGTTAAGTTTTTGTTCCCTGTGTTTGTTGAATTCTGTATTGAAGAGTTTCCTGATGAGATCAAACGTTTTAAGAGTATTGTTGATACTGCAGACCTCACGAAACCCGCGACTTGGTTTCCTTTCGCTCGTGCTATGAAGCGTAAAATCGTTTACCATTGTGGACCGACTAACAGTGGCAAAACGTACAATGCTTTGCAGCGGTTTATGGAAGCTAAGAATGGATTGTATTGCAGCCCTCTTAGGTTATTAGCCATGGAAGTTTTTGATAAAGTAAATGCTTTAGGGATTTACTGTAGTCTCTTGACTGGACAAGAGAAGAAATATGTTCCGTTCGCCAACCATGTATCTTGTACGGTTGAAATGGTGTCTACAGATGAGTTATATGAAGTGGCTGTGCTCGATGAAATACAAATGATGGCAGATCCTAGTAGAGGTCACGCTTGGACAAAAGCTTTGCTTGGATTAAAAGCTGATGAGATTCATTTGTGTGGAGATCCGAGTGTTTTGGATATTGTGCGTAAGATGTGTGCTGATACAGGGGACGAGTTAGTGGAAGAGCATTATGAAAGGTTCAAACCGTTAGTCGTAGAAGCGAAGACCTTATTAGGAGAGCTTAAAAATGTTAAGTCTGGGGATTGTGTTGTTGCGTTCTCTAGAAGAGAGATATTTGAAGTTAAAATGGCTATCGAGAAACATACAAATCATCGTTGTTGTGTTATTTACGGTGCATTGCCTCCTGAGACAAGGAGACAGCAAGCTAAGCTGTTTAATGATCAAGAAAACGAGTATGATGTTTTGGTTGCAAGTGATGCCGTTGGAATGGGATTGAATCTTAACATAAGACGGGTTGTGTTTTACAGTTTGAACAAGTACAACGGCGATAAGATCGTTCCAGTTGCAGCGTCACAGGTAAAACAGATTGCCGGGAGAGCTGGAAGGAGAGGAAGCCGTTACCCAGATGGACTTACAACGACATTGCACTTAGAAGATCTAAACTATCTAATCGAGTGTTTGCAACAACCGTTTGATGAAGTAACAAAAGTAGGGCTTTTCCCTTTCTTCGAACAGATTGAGCTTTTCGCTGCACAAGTTCCCGACATGGCCTTTTCAAATCTCTTAGAGCATTTTGGAAAACACTGCAGACTCGACGGTTCTTACTTCTTGTGCCGTCATGATCATGTGAAGAAAGTAGCAAACATGTTGGAGAAAGTAGAGGGACTGTCTCTAGAAGACCGGTTTAACTTCTGTTTTGCACCGGTTAATATCAGGAATCCGAGAGCGATGCACAACCTATATCGATTTGCTTCAAGTTATAGCCAAAATATGCCGGTTAATGTAGCAATGGGGATACCAAAGAGTTCTGCTAAGAGCGATGCCCAGCTATTGGATTTGGAAAGTAGACACCAGATTTTGTCTATGTATCTTTGGTTATCTAACCAATTTGAAGAGAACTTCCCATTTGTGGAGAAGGTTGAAGCAATGGCGACAAACATTGCAGAGTTGTTAGGTGAATCGTTGAGTAAAGCTTCTTGGAAGATGGAGTCAAAAGAAGAGAAAGTGAAAGGTCAAATGAAGGAAGATAGAGGATATGAAAGACCAGCTTCGTTAATAAAGTTAGTTAAGAAGCGGAAAGACGAGAAATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

776

Amino Acids

88.19

Weight (kDa)

5.62

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 166 - 250 2.6e-36 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
DEXQc_Suv3 PF22527 262 - 415 2.5e-69 DEXQ-box helicase domain of Suv3
Helicase_C PF00271 428 - 542 9.2e-15 Helicase conserved C-terminal domain
Suv3_C_1 PF18147 624 - 666 2.4e-15 Suv3 C-terminal domain 1
SUV3_C PF12513 688 - 735 1.5e-13 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 528
AccB7I CCANNNNNTGG 1 cut(s) 2065
AccI GTMKAC 4 cut(s) 236, 502, 1049, 2080
AccII CGCG 1 cut(s) 788
AciI CCGC 4 cut(s) 542, 786, 880, 2308
AclI AACGTT 1 cut(s) 745
AclWI GGATC 4 cut(s) 422, 657, 1097, 1169
AcsI RAATTY 2 cut(s) 73, 710
AcuI CTGAAG 1 cut(s) 464
AfaI GTAC 4 cut(s) 443, 866, 1033, 1553
AfiI CCNNNNNNNGG 5 cut(s) 141, 792, 1112, 2065, 2143
AflIII ACRYGT 1 cut(s) 1878
AgeI ACCGGT 3 cut(s) 141, 1914, 1936
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
Alw21I GWGCWC 1 cut(s) 1080
Alw26I GTCTC 5 cut(s) 368, 983, 1415, 1423, 1908
AlwI GGATC 4 cut(s) 422, 657, 1097, 1169
AoxI GGCC 2 cut(s) 665, 1782
ApeKI GCWGC 5 cut(s) 398, 877, 912, 1580, 1763
ApoI RAATTY 2 cut(s) 73, 710
ArsI GACNNNNNNTTYG 4 cut(s) 1117, 1149, 1248, 1280
AseI ATTAAT 1 cut(s) 321
AsiGI ACCGGT 3 cut(s) 141, 1914, 1936
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 665, 842
AsuC2I CCSGG 1 cut(s) 1606
AsuHPI GGTGA 1 cut(s) 2201
AsuII TTCGAA 1 cut(s) 1743
AvaII GGWCC 1 cut(s) 842
BaeGI GKGCMC 1 cut(s) 135
BauI CACGAG 2 cut(s) 402, 807
BbsI GAAGAC 2 cut(s) 1283, 1917
Bbv12I GWGCWC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 385, 889, 924, 1592, 1750
BccI CCATC 4 cut(s) 531, 1090, 1634, 2212
BceAI ACGGC 5 cut(s) 268, 1478, 1573, 1614, 1833
BcgI CGANNNNNNTGC 2 cut(s) 1945, 1979
BciVI GTATCC 1 cut(s) 2022
BclI TGATCA 2 cut(s) 1453, 1855
BcnI CCSGG 1 cut(s) 1606
BcoDI GTCTC 5 cut(s) 368, 983, 1415, 1423, 1908
BfaI CTAG 4 cut(s) 102, 1107, 1335, 1907
BfmI CTRYAG 5 cut(s) 37, 768, 973, 1050, 1819
BfuI GTATCC 1 cut(s) 2022
BglII AGATCT 2 cut(s) 104, 1669
BisI GCNGC 6 cut(s) 399, 543, 878, 913, 1581, 1764
BlpI GCTNAGC 1 cut(s) 1440
BlsI GCNGC 6 cut(s) 400, 544, 879, 914, 1582, 1765
Bme1390I CCNGG 1 cut(s) 1606
Bme18I GGWCC 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 665, 842
BmrFI CCNGG 1 cut(s) 1606
BmsI GCATC 3 cut(s) 1480, 1953, 2044
BpiI GAAGAC 2 cut(s) 1283, 1917
BpmI CTGGAG 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 1440
Bpu14I TTCGAA 1 cut(s) 1743
BpuMI CCSGG 1 cut(s) 1606
Bsa29I ATCGAT 1 cut(s) 1978
BsaBI GATNNNNATC 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 179, 933
BsaWI WCCGGW 3 cut(s) 141, 1914, 1936
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 792, 1112, 2065, 2143
Bse118I RCCGGY 4 cut(s) 141, 1914, 1936, 2008
Bse1I ACTGG 2 cut(s) 991, 1574
Bse3DI GCAATG 5 cut(s) 1409, 1655, 2028, 2166, 2172
Bse8I GATNNNNATC 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 1978
BseDI CCNNGG 2 cut(s) 179, 933
BseGI GGATG 2 cut(s) 385, 542
BseJI GATNNNNATC 1 cut(s) 420
BseLI CCNNNNNNNGG 5 cut(s) 141, 792, 1112, 2065, 2143
BseMI GCAATG 5 cut(s) 1409, 1655, 2028, 2166, 2172
BseMII CTCAG 4 cut(s) 87, 279, 363, 1410
BseNI ACTGG 2 cut(s) 991, 1574
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 5 cut(s) 385, 889, 924, 1592, 1750
BseYI CCCAGC 1 cut(s) 2058
BsgI GTGCAG 1 cut(s) 1749
Bsh1236I CGCG 1 cut(s) 788
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 2 cut(s) 667, 1784
BshTI ACCGGT 3 cut(s) 141, 1914, 1936
BshVI ATCGAT 1 cut(s) 1978
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 1080
BsiSI CCGG 5 cut(s) 142, 1605, 1915, 1937, 2009
BslFI GGGAC 3 cut(s) 623, 1235, 1911
BslI CCNNNNNNNGG 5 cut(s) 141, 792, 1112, 2065, 2143
BsmAI GTCTC 5 cut(s) 368, 983, 1415, 1423, 1908
BsmBI CGTCTC 1 cut(s) 368
BsmFI GGGAC 3 cut(s) 623, 1235, 1911
BsnI GGCC 2 cut(s) 667, 1784
Bsp119I TTCGAA 1 cut(s) 1743
Bsp1286I GDGCHC 2 cut(s) 135, 1080
Bsp1407I TGTACA 1 cut(s) 441
Bsp1720I GCTNAGC 1 cut(s) 1440
Bsp19I CCATGG 2 cut(s) 179, 933
BspACI CCGC 4 cut(s) 542, 786, 880, 2308
BspANI GGCC 2 cut(s) 667, 1784
BspCNI CTCAG 4 cut(s) 88, 280, 364, 1411
BspDI ATCGAT 1 cut(s) 1978
BspFNI CGCG 1 cut(s) 788
BspHI TCATGA 2 cut(s) 424, 1852
BspMAI CTGCAG 2 cut(s) 772, 1823
BspPI GGATC 4 cut(s) 422, 657, 1097, 1169
BspQI GCTCTTC 1 cut(s) 1230
BspT104I TTCGAA 1 cut(s) 1743
BsrDI GCAATG 5 cut(s) 1409, 1655, 2028, 2166, 2172
BsrFI RCCGGY 4 cut(s) 141, 1914, 1936, 2008
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 2 cut(s) 991, 1574
BssAI RCCGGY 4 cut(s) 141, 1914, 1936, 2008
BssECI CCNNGG 2 cut(s) 179, 933
BssSI CACGAG 2 cut(s) 402, 807
BssT1I CCWWGG 2 cut(s) 179, 933
Bst2BI CACGAG 2 cut(s) 402, 807
Bst6I CTCTTC 5 cut(s) 717, 1230, 1333, 2121, 2226
BstAPI GCANNNNNTGC 1 cut(s) 1490
BstAUI TGTACA 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 1743
BstC8I GCNNGC 1 cut(s) 1437
BstDSI CCRYGG 2 cut(s) 179, 933
BstENI CCTNNNNNAGG 1 cut(s) 1110
BstF5I GGATG 2 cut(s) 385, 542
BstFNI CGCG 1 cut(s) 788
BstHHI GCGC 1 cut(s) 529
BstMAI GTCTC 5 cut(s) 368, 983, 1415, 1423, 1908
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 6 cut(s) 404, 475, 551, 1441, 1490, 1610
BstNSI RCATGY 1 cut(s) 1882
BstSCI CCNGG 1 cut(s) 1604
BstSFI CTRYAG 5 cut(s) 37, 768, 973, 1050, 1819
BstSLI GKGCMC 1 cut(s) 135
BstUI CGCG 1 cut(s) 788
BstV1I GCAGC 5 cut(s) 385, 889, 924, 1592, 1750
BstV2I GAAGAC 2 cut(s) 1283, 1917
BstX2I RGATCY 5 cut(s) 104, 649, 1102, 1174, 1669
BstYI RGATCY 5 cut(s) 104, 649, 1102, 1174, 1669
Bsu15I ATCGAT 1 cut(s) 1978
BsuI GTATCC 1 cut(s) 2022
BsuRI GGCC 2 cut(s) 667, 1784
BsuTUI ATCGAT 1 cut(s) 1978
BtgI CCRYGG 2 cut(s) 179, 933
BtgZI GCGATG 2 cut(s) 1976, 2067
BtsCI GGATG 2 cut(s) 385, 542
BtsI GCAGTG 1 cut(s) 1816
BtsIMutI CAGTG 3 cut(s) 369, 859, 1816
Cac8I GCNNGC 1 cut(s) 1437
CciI TCATGA 2 cut(s) 424, 1852
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 4 cut(s) 141, 1914, 1936, 2008
Cfr13I GGNCC 2 cut(s) 665, 842
ClaI ATCGAT 1 cut(s) 1978
CseI GACGC 1 cut(s) 1572
Csp6I GTAC 4 cut(s) 442, 865, 1032, 1552
CspAI ACCGGT 3 cut(s) 141, 1914, 1936
CviAII CATG 9 cut(s) 180, 425, 506, 934, 1022, 1780, 1853, 1859, 1879
CviQI GTAC 4 cut(s) 442, 865, 1032, 1552
Eam1104I CTCTTC 5 cut(s) 717, 1230, 1333, 2121, 2226
EarI CTCTTC 5 cut(s) 717, 1230, 1333, 2121, 2226
Eco130I CCWWGG 2 cut(s) 179, 933
Eco47I GGWCC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 1110
EcoRI GAATTC 1 cut(s) 710
EcoT14I CCWWGG 2 cut(s) 179, 933
ErhI CCWWGG 2 cut(s) 179, 933
Esp3I CGTCTC 1 cut(s) 368
FaeI CATG 9 cut(s) 183, 428, 509, 937, 1025, 1783, 1856, 1862, 1882
FalI AAGNNNNNCTT 6 cut(s) 1122, 1154, 1713, 1745, 2266, 2298
FaqI GGGAC 3 cut(s) 623, 1235, 1911
FatI CATG 9 cut(s) 179, 424, 505, 933, 1021, 1779, 1852, 1858, 1878
FauI CCCGC 1 cut(s) 793
FbaI TGATCA 2 cut(s) 1453, 1855
FblI GTMKAC 4 cut(s) 236, 502, 1049, 2080
Fnu4HI GCNGC 6 cut(s) 399, 543, 878, 913, 1581, 1764
FokI GGATG 2 cut(s) 392, 549
Fsp4HI GCNGC 6 cut(s) 399, 543, 878, 913, 1581, 1764
FspBI CTAG 4 cut(s) 102, 1107, 1335, 1907
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 1 cut(s) 528
GluI GCNGC 6 cut(s) 399, 543, 878, 913, 1581, 1764
GsaI CCCAGC 1 cut(s) 2062
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 2 cut(s) 667, 1784
HapII CCGG 5 cut(s) 142, 1605, 1915, 1937, 2009
HgaI GACGC 1 cut(s) 1572
HhaI GCGC 1 cut(s) 529
Hin1II CATG 9 cut(s) 183, 428, 509, 937, 1025, 1783, 1856, 1862, 1882
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HindIII AAGCTT 3 cut(s) 476, 1131, 2205
HpaII CCGG 5 cut(s) 142, 1605, 1915, 1937, 2009
HphI GGTGA 1 cut(s) 2201
Hpy166II GTNNAC 6 cut(s) 237, 503, 832, 842, 1050, 2081
Hpy188I TCNGA 6 cut(s) 97, 121, 168, 289, 1179, 1956
Hpy8I GTNNAC 6 cut(s) 237, 503, 832, 842, 1050, 2081
Hpy99I CGWCG 1 cut(s) 1832
HpyAV CCTTC 5 cut(s) 305, 338, 1611, 2143, 2248
HpyCH4IV ACGT 2 cut(s) 745, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 404, 475, 551, 1441, 1490, 1610
HpySE526I ACGT 2 cut(s) 745, 863
Hsp92II CATG 9 cut(s) 183, 428, 509, 937, 1025, 1783, 1856, 1862, 1882
HspAI GCGC 1 cut(s) 527
Ksp22I TGATCA 2 cut(s) 1453, 1855
LguI GCTCTTC 1 cut(s) 1230
LmnI GCTCC 2 cut(s) 225, 448
Lsp1109I GCAGC 5 cut(s) 385, 889, 924, 1592, 1750
LweI GCATC 3 cut(s) 1480, 1953, 2044
MaeI CTAG 4 cut(s) 102, 1107, 1335, 1907
MaeII ACGT 2 cut(s) 745, 863
MaeIII GTNAC 5 cut(s) 49, 1115, 1584, 1631, 1714
MflI RGATCY 5 cut(s) 104, 649, 1102, 1174, 1669
MhlI GDGCHC 2 cut(s) 135, 1080
MluCI AATT 6 cut(s) 73, 115, 633, 710, 2120, 2321
MlyI GAGTC 3 cut(s) 107, 1818, 2231
MmeI TCCRAC 2 cut(s) 1477, 1863
MroXI GAANNNNTTC 1 cut(s) 726
MslI CAYNNNNRTG 2 cut(s) 1167, 1857
MspA1I CMGCKG 1 cut(s) 880
MspI CCGG 5 cut(s) 142, 1605, 1915, 1937, 2009
MspR9I CCNGG 1 cut(s) 1606
MvnI CGCG 1 cut(s) 788
MwoI GCNNNNNNNGC 6 cut(s) 404, 475, 551, 1441, 1490, 1610
NciI CCSGG 1 cut(s) 1606
NcoI CCATGG 2 cut(s) 179, 933
NlaIII CATG 9 cut(s) 183, 428, 509, 937, 1025, 1783, 1856, 1862, 1882
NmuCI GTSAC 2 cut(s) 1115, 1584
NsbI TGCGCA 1 cut(s) 528
NspI RCATGY 1 cut(s) 1882
NspV TTCGAA 1 cut(s) 1743
PagI TCATGA 2 cut(s) 424, 1852
PciI ACATGT 1 cut(s) 1878
PciSI GCTCTTC 1 cut(s) 1230
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 7 cut(s) 92, 169, 359, 1159, 1510, 1951, 2192
PflMI CCANNNNNTGG 1 cut(s) 2065
PinAI ACCGGT 3 cut(s) 141, 1914, 1936
PkrI GCNGC 6 cut(s) 400, 544, 879, 914, 1582, 1765
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 3 cut(s) 106, 1818, 2230
PpsI GAGTC 3 cut(s) 106, 1818, 2230
PscI ACATGT 1 cut(s) 1878
PshBI ATTAAT 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 745
PspFI CCCAGC 1 cut(s) 2058
PspPI GGNCC 2 cut(s) 665, 842
PstI CTGCAG 2 cut(s) 772, 1823
PsuI RGATCY 5 cut(s) 104, 649, 1102, 1174, 1669
PvuI CGATCG 1 cut(s) 418
RsaI GTAC 4 cut(s) 443, 866, 1033, 1553
RsaNI GTAC 4 cut(s) 442, 865, 1032, 1552
RseI CAYNNNNRTG 2 cut(s) 1167, 1857
SapI GCTCTTC 1 cut(s) 1230
SatI GCNGC 6 cut(s) 399, 543, 878, 913, 1581, 1764
Sau96I GGNCC 2 cut(s) 665, 842
SchI GAGTC 3 cut(s) 107, 1818, 2231
ScrFI CCNGG 1 cut(s) 1606
SduI GDGCHC 2 cut(s) 135, 1080
SfaNI GCATC 3 cut(s) 1480, 1953, 2044
SfcI CTRYAG 5 cut(s) 37, 768, 973, 1050, 1819
SfuI TTCGAA 1 cut(s) 1743
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1857
Sse9I AATT 6 cut(s) 73, 115, 633, 710, 2120, 2321
SsiI CCGC 4 cut(s) 542, 786, 880, 2308
SspMI CTAG 4 cut(s) 102, 1107, 1335, 1907
StyD4I CCNGG 1 cut(s) 1604
StyI CCWWGG 2 cut(s) 179, 933
TaiI ACGT 2 cut(s) 748, 866
TaqI TCGA 7 cut(s) 65, 1080, 1368, 1686, 1743, 1827, 1978
TaqII GACCGA 1 cut(s) 859
TasI AATT 6 cut(s) 73, 115, 633, 710, 2120, 2321
TatI WGTACW 2 cut(s) 441, 1551
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 7 cut(s) 92, 169, 359, 1159, 1510, 1951, 2192
TscAI CASTG 3 cut(s) 369, 859, 1823
TseFI GTSAC 2 cut(s) 1115, 1584
TseI GCWGC 5 cut(s) 398, 877, 912, 1580, 1763
Tsp45I GTSAC 2 cut(s) 1115, 1584
TspGWI ACGGA 2 cut(s) 392, 999
TspRI CASTG 3 cut(s) 369, 859, 1823
Van91I CCANNNNNTGG 1 cut(s) 2065
VpaK11BI GGWCC 1 cut(s) 842
VspI ATTAAT 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 1110
XapI RAATTY 2 cut(s) 73, 710
XbaI TCTAGA 3 cut(s) 101, 1334, 1906
XceI RCATGY 1 cut(s) 1882
XmiI GTMKAC 4 cut(s) 236, 502, 1049, 2080
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 4 cut(s) 102, 1107, 1335, 1907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.