MD17G1050500.v1.1

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003612
Physical Location & Seq
Reverse (-)
3741591 .. 3745154
3564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1050500.v1.1.491

Sequence Viewer

Length: 2511 bp
ATGGCTAGAGGCCCTTCAAGTTCTCTGTTTCGAATTTATGCTTCCAAGAAGAACATATCTAGGTTTAGGGTTTTGATATGGAATCAACATGTTAGTTCTTCTGCATCATATGACCGCTCTCTATCCTCAAATTTCCAATTTTGTCCCGCTTTCGATGTTCCGAATCACCGTTCGTTTTCGACGGGATTCAGGGACCTAATTCGGGTTAGATTGCCCCCCAAAGGCCCGAATTTCACAGGCTGCAGTACCTTTGATGCGAAACCATTTTCGACTACTGTGGAGGATGAGGAGGATAATGGGGTTTGTAGTAGTAGAATGGTGGATTCTGAATGTGATTTTGATGCAGATGCTGGGAAAATTTTGGACTTTGTAAATGAGGGCAGTGCTCGCAATTTGTCAAATTGTGGAGATGGAGATGAGGGTAATGTCAGTCTGGTTTGTGATTCGATGGTTGTTGAGTCGGAAAATGGTGATGAGAATGTGAGTTCAGCGAAACCTATGAACTTTCAGCAGGTTGCGTCACGTGAGCCTGTTGAATTGTATCATGAGCTTCGCAATGCTGAAAAGGGTGCAAAGCAGAGACGGGCTGATTGGGAGACTCTTCAAGAGATATTCCGGAATTTTGGCAATTCGGGTTGGGCATGCGATCAGGCTCTTGCAATATACATTGGACGTTCATTTTTCCCTACTGCCGTGCACAAGTTTCGGAGTTTTTTCTTCAAGAAGTGTTCGGCTGATGTTGCCAAATATGTGGTATCCCTTGGTCCATCTAATGATGCTGTGAAGTTTTTGTTTCCTATATTTGTTGAATATTGTTTAGAAGAATTTCCAGATGAGATCAAGCGTTTTCGTAGTATGATTGAATCAGCAGATCTCACTAAGCCTCATACATGGTTTCCATTTGCACGGGCTATGAAGCGTAAGATAATTTATCACTGTGGTCCAACCAATAGTGGTAAAACATACAATGCTTTGCAACGGTTTATGGAAGCAAAGAAGGGTATTTACTGCAGTCCTCTGAGATTATTGGCTATGGAAGTCTTTGATAAAGTCAACGGGCATGGAGTTTATTGTAGTCTTCACACAGGACAAGAAAAGAAATTTGTCCCATTCTCAAACCATGTTGCTTGCACAGTCGAAATGGTGTCAACTGATGAAATGTATGATGTTGCCGTGATTGATGAAATTCAGATGATGGCAGATCCATACAGAGGTTTTGCATGGACAAGAGCATTGCTTGGGCTGAAGGCTGACGAGATACATTTGTGTGGAGATCCAAGTGTTCTGAACATTGTTCGACAAATCTGTTCAGAAACTGGTGATGAGTTGCACGAGCAGCATTATGAGAGGTTCAAGCCATTGGTGGTTGAAGCCAAAACGCTCTTGGGAGATCTTAAAAATGTTCGGTCTGGAGACTGTGTGGTTGCTTTTTCTAGGAGAGAGGTATTTGAGGTTAAAATTGCAATTGAAAAACACACTAATCATCGTTGTTGTGTTATTTATGGTGCCTTGCCACCAGAGACTCGTCGACAGCAAGCGAATTTGTTTAATGATCAAAATAATGAATACGATGTGCTTGTTGCTACTGATGCAGTGGGAATGGGTCTAAATCTCAATATCAGGAGGGTTGTGTTCTTTACGCTTGCAAAGTACAATGGTGACAAAACTGTCGCGGTTCCAGCGTCTCAGGTGAAGCAGATTGCTGGAAGAGCTGGTCGGAGAGGAAGCATCTATCCAGACGGACTCACAACCACATTGAATTTAGATGATCTGGATTACTTAATTGAAAGTCTAAAGCAACCTTTTGACGAAGTTAAGAAAGTGGGCCTTTTCCCTTTCTTTGAGCAGGTTGAGCTATTCGCAGGGAAAATTCCTGATGTTACGTTCTGCCAGCTACTTGAAAATTTTAGTGAAAATTGTCGTCTGGATGGTTCATACTTCCTGTGTCGACATGATCATATAAAGAAGGTTGCAAATATGTTACAGAAGGTTCCGGAACTATCTCTGGAGGATCGTTTTAACTTCTGTTTTGCCCCAGTTAATATCAAAGACCCAAGAGCTATGTATCATCTTCTAAGGTTTGCTTCATCATATGGTCAGAAACTCCCTGTCAACATTGCTATGGGCGTACCAACGGGATCTGCCCGTAACAATAAGGAGCTCTTGGATCTGGAGACCAAGCACCAAGTTTGTTCTATGTATATGTGGTTGTCACACCACTTCAAGAAGGAAACGTTTCCATACTGGAAGAAGGCTGAGGCAATGGCCTCGGATATTGCTGAGTTGTTGGGCAAGTCTCTAGCCAATGCTAATTGGAAACCAGAGTCAATGCAGGCAGAGAACCAAAAGTTTCTTGAACAGAAGCAAAATAGTTATGAGAGGCCAAGGTCACTCATCAAGCTGTATGACAAGAAAAAGCATGACCGGTCTGTACAACATGAGCTCGGAGAGAAAGCACTCGGTGTGTGCAAACCAGTAGTCAGAGATAGACAACCACGAGGGCAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

837

Amino Acids

95.0

Weight (kDa)

7.71

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 199 - 283 5.8e-41 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
DEXQc_Suv3 PF22527 295 - 448 1.6e-70 DEXQ-box helicase domain of Suv3
Helicase_C PF00271 467 - 575 6.8e-15 Helicase conserved C-terminal domain
Suv3_C_1 PF18147 657 - 698 2e-17 Suv3 C-terminal domain 1
SUV3_C PF12513 721 - 769 1.9e-09 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1667
Acc36I ACCTGC 2 cut(s) 502, 1837
AccB1I GGYRCC 1 cut(s) 1505
AccBSI CCGCTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 1528, 1948
AccII CGCG 1 cut(s) 1673
AccIII TCCGGA 2 cut(s) 615, 1993
AciI CCGC 3 cut(s) 115, 147, 1673
AclI AACGTT 1 cut(s) 2234
AclWI GGATC 5 cut(s) 1196, 1268, 2019, 2146, 2175
AcuI CTGAAG 1 cut(s) 1265
AcvI CACGTG 1 cut(s) 524
AdeI CACNNNGTG 1 cut(s) 2462
AfaI GTAC 4 cut(s) 247, 1652, 2130, 2433
AfiI CCNNNNNNNGG 3 cut(s) 202, 221, 1211
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 2424
AluBI AGCT 8 cut(s) 550, 1712, 1855, 1894, 2060, 2161, 2401, 2443
AluI AGCT 8 cut(s) 550, 1712, 1855, 1894, 2060, 2161, 2401, 2443
Alw21I GWGCWC 4 cut(s) 388, 699, 2163, 2445
Alw26I GTCTC 7 cut(s) 574, 590, 1407, 1514, 1689, 2168, 2301
Alw44I GTGCAC 1 cut(s) 695
AlwI GGATC 5 cut(s) 1196, 1268, 2019, 2146, 2175
AlwNI CAGNNNCTG 2 cut(s) 350, 1316
Aor13HI TCCGGA 2 cut(s) 615, 1993
AoxI GGCC 5 cut(s) 10, 223, 1825, 2265, 2381
ApaLI GTGCAC 1 cut(s) 695
ApeKI GCWGC 2 cut(s) 240, 1336
ArsI GACNNNNNNTTYG 2 cut(s) 2463, 2495
AsiGI ACCGGT 1 cut(s) 2424
Asp700I GAANNNNTTC 2 cut(s) 825, 2235
AspS9I GGNCC 6 cut(s) 11, 193, 224, 764, 941, 1825
AsuHPI GGTGA 5 cut(s) 158, 482, 1331, 1670, 1702
AsuII TTCGAA 1 cut(s) 31
AvaII GGWCC 3 cut(s) 193, 764, 941
BaeGI GKGCMC 1 cut(s) 699
BaeI ACNNNNGTAYC 2 cut(s) 1250, 1283
BanI GGYRCC 1 cut(s) 1505
BanII GRGCYC 2 cut(s) 2163, 2445
BarI GAAGNNNNNNTAC 2 cut(s) 989, 1021
BauI CACGAG 2 cut(s) 1331, 2496
BbrPI CACGTG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 4 cut(s) 388, 699, 2163, 2445
BbvCI CCTCAGC 1 cut(s) 2256
BbvI GCAGC 2 cut(s) 227, 1348
BccI CCATC 5 cut(s) 404, 442, 775, 1189, 1922
BceAI ACGGC 2 cut(s) 677, 1157
BcgI CGANNNNNNTGC 4 cut(s) 686, 720, 2250, 2284
BciVI GTATCC 1 cut(s) 766
BclI TGATCA 2 cut(s) 1552, 1954
BcoDI GTCTC 7 cut(s) 574, 590, 1407, 1514, 1689, 2168, 2301
BfaI CTAG 4 cut(s) 6, 60, 1434, 2300
BfmI CTRYAG 2 cut(s) 241, 1009
BfuAI ACCTGC 2 cut(s) 502, 1837
BfuI GTATCC 1 cut(s) 766
BglII AGATCT 2 cut(s) 871, 1390
BisI GCNGC 2 cut(s) 241, 1337
BlsI GCNGC 2 cut(s) 242, 1338
Bme18I GGWCC 3 cut(s) 193, 764, 941
BmgT120I GGNCC 6 cut(s) 11, 193, 224, 764, 941, 1825
BmiI GGNNCC 4 cut(s) 194, 1507, 1677, 1992
BmrI ACTGGG 1 cut(s) 2030
BmsI GCATC 7 cut(s) 113, 244, 331, 337, 766, 1579, 1737
BmuI ACTGGG 1 cut(s) 2030
BpiI GAAGAC 1 cut(s) 1070
BpmI CTGGAG 3 cut(s) 1431, 2027, 2192
Bpu10I CCTNAGC 1 cut(s) 2256
Bpu14I TTCGAA 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 524
BsaI GGTCTC 1 cut(s) 2168
BsaJI CCNNGG 3 cut(s) 760, 2268, 2384
BsaWI WCCGGW 3 cut(s) 615, 1993, 2424
BsaXI ACNNNNNCTCC 2 cut(s) 1404, 1434
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 221, 1211
Bse118I RCCGGY 1 cut(s) 2424
Bse1I ACTGG 4 cut(s) 1321, 2036, 2249, 2474
Bse3DI GCAATG 4 cut(s) 562, 1232, 2115, 2268
BseAI TCCGGA 2 cut(s) 615, 1993
BseDI CCNNGG 3 cut(s) 760, 2268, 2384
BseGI GGATG 2 cut(s) 289, 1933
BseLI CCNNNNNNNGG 3 cut(s) 202, 221, 1211
BseMI GCAATG 4 cut(s) 562, 1232, 2115, 2268
BseMII CTCAG 4 cut(s) 1010, 1700, 2247, 2271
BseNI ACTGG 4 cut(s) 1321, 2036, 2249, 2474
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 2 cut(s) 227, 1348
BseYI CCCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 1673
BshFI GGCC 5 cut(s) 12, 225, 1827, 2267, 2383
BshNI GGYRCC 1 cut(s) 1505
BshTI ACCGGT 1 cut(s) 2424
BsiHKAI GWGCWC 4 cut(s) 388, 699, 2163, 2445
BsiSI CCGG 3 cut(s) 616, 1994, 2425
BslFI GGGAC 3 cut(s) 129, 206, 1091
BslI CCNNNNNNNGG 3 cut(s) 202, 221, 1211
BsmAI GTCTC 7 cut(s) 574, 590, 1407, 1514, 1689, 2168, 2301
BsmBI CGTCTC 2 cut(s) 574, 1689
BsmFI GGGAC 3 cut(s) 129, 206, 1091
BsnI GGCC 5 cut(s) 12, 225, 1827, 2267, 2383
Bso31I GGTCTC 1 cut(s) 2168
Bsp119I TTCGAA 1 cut(s) 31
Bsp1286I GDGCHC 4 cut(s) 388, 699, 2163, 2445
Bsp13I TCCGGA 2 cut(s) 615, 1993
Bsp1407I TGTACA 1 cut(s) 2431
BspACI CCGC 3 cut(s) 115, 147, 1673
BspANI GGCC 5 cut(s) 12, 225, 1827, 2267, 2383
BspCNI CTCAG 4 cut(s) 1011, 1699, 2248, 2272
BspEI TCCGGA 2 cut(s) 615, 1993
BspFNI CGCG 1 cut(s) 1673
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 4 cut(s) 194, 1507, 1677, 1992
BspMAI CTGCAG 2 cut(s) 245, 1013
BspMI ACCTGC 2 cut(s) 502, 1837
BspPI GGATC 5 cut(s) 1196, 1268, 2019, 2146, 2175
BspQI GCTCTTC 1 cut(s) 1702
BspT104I TTCGAA 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 1505
BspTNI GGTCTC 1 cut(s) 2168
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 4 cut(s) 562, 1232, 2115, 2268
BsrFI RCCGGY 1 cut(s) 2424
BsrGI TGTACA 1 cut(s) 2431
BsrI ACTGG 4 cut(s) 1321, 2036, 2249, 2474
BssAI RCCGGY 1 cut(s) 2424
BssECI CCNNGG 3 cut(s) 760, 2268, 2384
BssSI CACGAG 2 cut(s) 1331, 2496
BssT1I CCWWGG 2 cut(s) 760, 2384
Bst2BI CACGAG 2 cut(s) 1331, 2496
Bst4CI ACNGT 7 cut(s) 170, 277, 938, 981, 1135, 1418, 1669
Bst6I CTCTTC 2 cut(s) 606, 1702
BstAUI TGTACA 1 cut(s) 2431
BstBAI YACGTR 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 31
BstC8I GCNNGC 7 cut(s) 388, 643, 1129, 1536, 1644, 1892, 2334
BstDEI CTNAG 6 cut(s) 879, 1019, 1686, 2075, 2256, 2280
BstF5I GGATG 2 cut(s) 289, 1933
BstFNI CGCG 1 cut(s) 1673
BstMAI GTCTC 7 cut(s) 574, 590, 1407, 1514, 1689, 2168, 2301
BstMWI GCNNNNNNNGC 7 cut(s) 387, 740, 1336, 1589, 1679, 1709, 1852
BstNSI RCATGY 2 cut(s) 92, 645
BstSFI CTRYAG 2 cut(s) 241, 1009
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 1 cut(s) 1673
BstV1I GCAGC 2 cut(s) 227, 1348
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 6 cut(s) 871, 1201, 1273, 1390, 2138, 2167
BstXI CCANNNNNNTGG 1 cut(s) 751
BstYI RGATCY 6 cut(s) 871, 1201, 1273, 1390, 2138, 2167
BsuI GTATCC 1 cut(s) 766
BsuRI GGCC 5 cut(s) 12, 225, 1827, 2267, 2383
BtsCI GGATG 2 cut(s) 289, 1933
BtsI GCAGTG 2 cut(s) 388, 1599
BtsIMutI CAGTG 3 cut(s) 388, 934, 1599
BveI ACCTGC 2 cut(s) 502, 1837
Cac8I GCNNGC 7 cut(s) 388, 643, 1129, 1536, 1644, 1892, 2334
CaiI CAGNNNCTG 2 cut(s) 350, 1316
CciI TCATGA 1 cut(s) 544
Cfr10I RCCGGY 1 cut(s) 2424
Cfr13I GGNCC 6 cut(s) 11, 193, 224, 764, 941, 1825
CseI GACGC 2 cut(s) 507, 1671
Csp6I GTAC 4 cut(s) 246, 1651, 2129, 2432
CspAI ACCGGT 1 cut(s) 2424
CviQI GTAC 4 cut(s) 246, 1651, 2129, 2432
DdeI CTNAG 6 cut(s) 879, 1019, 1686, 2075, 2256, 2280
DraIII CACNNNGTG 1 cut(s) 2462
DrdI GACNNNNNNGTC 1 cut(s) 1667
DseDI GACNNNNNNGTC 1 cut(s) 1667
Eam1104I CTCTTC 2 cut(s) 606, 1702
EarI CTCTTC 2 cut(s) 606, 1702
Ecl136II GAGCTC 2 cut(s) 2161, 2443
Eco130I CCWWGG 2 cut(s) 760, 2384
Eco24I GRGCYC 2 cut(s) 2163, 2445
Eco31I GGTCTC 1 cut(s) 2168
Eco47I GGWCC 3 cut(s) 193, 764, 941
Eco53kI GAGCTC 2 cut(s) 2161, 2443
Eco57I CTGAAG 1 cut(s) 1265
Eco72I CACGTG 1 cut(s) 524
EcoICRI GAGCTC 2 cut(s) 2161, 2443
EcoO109I RGGNCCY 2 cut(s) 11, 193
EcoT14I CCWWGG 2 cut(s) 760, 2384
EcoT38I GRGCYC 2 cut(s) 2163, 2445
ErhI CCWWGG 2 cut(s) 760, 2384
Esp3I CGTCTC 2 cut(s) 574, 1689
FalI AAGNNNNNCTT 6 cut(s) 1812, 1844, 2068, 2100, 2147, 2179
FaqI GGGAC 3 cut(s) 129, 206, 1091
FauI CCCGC 1 cut(s) 154
FauNDI CATATG 2 cut(s) 109, 2092
FbaI TGATCA 2 cut(s) 1552, 1954
FblI GTMKAC 2 cut(s) 1528, 1948
Fnu4HI GCNGC 2 cut(s) 241, 1337
FokI GGATG 2 cut(s) 296, 1940
FriOI GRGCYC 2 cut(s) 2163, 2445
Fsp4HI GCNGC 2 cut(s) 241, 1337
FspBI CTAG 4 cut(s) 6, 60, 1434, 2300
GluI GCNGC 2 cut(s) 241, 1337
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 3 cut(s) 1431, 2027, 2192
HaeIII GGCC 5 cut(s) 12, 225, 1827, 2267, 2383
HapII CCGG 3 cut(s) 616, 1994, 2425
HgaI GACGC 2 cut(s) 507, 1671
HincII GTYRAC 5 cut(s) 1054, 1149, 1529, 1949, 2113
HindII GTYRAC 5 cut(s) 1054, 1149, 1529, 1949, 2113
HpaII CCGG 3 cut(s) 616, 1994, 2425
HphI GGTGA 5 cut(s) 158, 482, 1331, 1670, 1702
Hpy166II GTNNAC 6 cut(s) 697, 1054, 1149, 1529, 1949, 2113
Hpy8I GTNNAC 6 cut(s) 697, 1054, 1149, 1529, 1949, 2113
Hpy99I CGWCG 2 cut(s) 184, 1530
HpyAV CCTTC 7 cut(s) 24, 991, 1240, 1960, 1981, 2221, 2245
HpyCH4III ACNGT 7 cut(s) 170, 277, 938, 981, 1135, 1418, 1669
HpyCH4IV ACGT 4 cut(s) 523, 673, 1883, 2234
HpyF10VI GCNNNNNNNGC 7 cut(s) 387, 740, 1336, 1589, 1679, 1709, 1852
HpyF3I CTNAG 6 cut(s) 879, 1019, 1686, 2075, 2256, 2280
HpySE526I ACGT 4 cut(s) 523, 673, 1883, 2234
Kpn2I TCCGGA 2 cut(s) 615, 1993
Ksp22I TGATCA 2 cut(s) 1552, 1954
LguI GCTCTTC 1 cut(s) 1702
LmnI GCTCC 1 cut(s) 2158
Lsp1109I GCAGC 2 cut(s) 227, 1348
LweI GCATC 7 cut(s) 113, 244, 331, 337, 766, 1579, 1737
MaeI CTAG 4 cut(s) 6, 60, 1434, 2300
MaeII ACGT 4 cut(s) 523, 673, 1883, 2234
MaeIII GTNAC 7 cut(s) 519, 1658, 1879, 1980, 2147, 2211, 2388
MbiI CCGCTC 1 cut(s) 117
MboII GAAGA 9 cut(s) 61, 90, 593, 709, 833, 1070, 1719, 2063, 2260
MfeI CAATTG 1 cut(s) 1464
MflI RGATCY 6 cut(s) 871, 1201, 1273, 1390, 2138, 2167
MhlI GDGCHC 4 cut(s) 388, 699, 2163, 2445
MlyI GAGTC 5 cut(s) 467, 592, 1516, 1737, 2333
MmeI TCCRAC 3 cut(s) 441, 968, 1697
MroI TCCGGA 2 cut(s) 615, 1993
MroXI GAANNNNTTC 2 cut(s) 825, 2235
MseI TTAA 7 cut(s) 1395, 1455, 1548, 1781, 1815, 2019, 2040
MslI CAYNNNNRTG 2 cut(s) 1266, 2120
MspI CCGG 3 cut(s) 616, 1994, 2425
MunI CAATTG 1 cut(s) 1464
MvnI CGCG 1 cut(s) 1673
MwoI GCNNNNNNNGC 7 cut(s) 387, 740, 1336, 1589, 1679, 1709, 1852
NdeI CATATG 2 cut(s) 109, 2092
NlaIV GGNNCC 4 cut(s) 194, 1507, 1677, 1992
NmuCI GTSAC 4 cut(s) 519, 1658, 2211, 2388
NspI RCATGY 2 cut(s) 92, 645
NspV TTCGAA 1 cut(s) 31
PaeI GCATGC 1 cut(s) 645
PagI TCATGA 1 cut(s) 544
PciI ACATGT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 1702
PdmI GAANNNNTTC 2 cut(s) 825, 2235
PfeI GAWTC 6 cut(s) 82, 163, 186, 323, 443, 863
PinAI ACCGGT 1 cut(s) 2424
PkrI GCNGC 2 cut(s) 242, 1338
PleI GAGTC 5 cut(s) 466, 592, 1516, 1737, 2332
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
PpsI GAGTC 5 cut(s) 466, 592, 1516, 1737, 2332
Ppu21I YACGTR 1 cut(s) 524
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 88
Psp124BI GAGCTC 2 cut(s) 2163, 2445
Psp1406I AACGTT 1 cut(s) 2234
Psp5II RGGWCCY 1 cut(s) 193
PspCI CACGTG 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 350
PspN4I GGNNCC 4 cut(s) 194, 1507, 1677, 1992
PspPI GGNCC 6 cut(s) 11, 193, 224, 764, 941, 1825
PspPPI RGGWCCY 1 cut(s) 193
PstI CTGCAG 2 cut(s) 245, 1013
PstNI CAGNNNCTG 2 cut(s) 350, 1316
PsuI RGATCY 6 cut(s) 871, 1201, 1273, 1390, 2138, 2167
RsaI GTAC 4 cut(s) 247, 1652, 2130, 2433
RsaNI GTAC 4 cut(s) 246, 1651, 2129, 2432
RseI CAYNNNNRTG 2 cut(s) 1266, 2120
SacI GAGCTC 2 cut(s) 2163, 2445
SalI GTCGAC 2 cut(s) 1527, 1947
SapI GCTCTTC 1 cut(s) 1702
SaqAI TTAA 7 cut(s) 1395, 1455, 1548, 1781, 1815, 2019, 2040
SatI GCNGC 2 cut(s) 241, 1337
Sau96I GGNCC 6 cut(s) 11, 193, 224, 764, 941, 1825
SchI GAGTC 5 cut(s) 467, 592, 1516, 1737, 2333
SduI GDGCHC 4 cut(s) 388, 699, 2163, 2445
SfaNI GCATC 7 cut(s) 113, 244, 331, 337, 766, 1579, 1737
SfcI CTRYAG 2 cut(s) 241, 1009
SfuI TTCGAA 1 cut(s) 31
SinI GGWCC 3 cut(s) 193, 764, 941
SmiMI CAYNNNNRTG 2 cut(s) 1266, 2120
SphI GCATGC 1 cut(s) 645
SsiI CCGC 3 cut(s) 115, 147, 1673
SspI AATATT 1 cut(s) 812
SspMI CTAG 4 cut(s) 6, 60, 1434, 2300
SstI GAGCTC 2 cut(s) 2163, 2445
StyI CCWWGG 2 cut(s) 760, 2384
TaaI ACNGT 7 cut(s) 170, 277, 938, 981, 1135, 1418, 1669
TaiI ACGT 4 cut(s) 526, 676, 1886, 2237
TaqI TCGA 9 cut(s) 31, 153, 179, 269, 446, 1137, 1297, 1528, 1948
TaqII GACCGA 1 cut(s) 1395
TatI WGTACW 2 cut(s) 1650, 2431
TfiI GAWTC 6 cut(s) 82, 163, 186, 323, 443, 863
Tru1I TTAA 7 cut(s) 1395, 1455, 1548, 1781, 1815, 2019, 2040
Tru9I TTAA 7 cut(s) 1395, 1455, 1548, 1781, 1815, 2019, 2040
TscAI CASTG 3 cut(s) 388, 941, 1599
TseFI GTSAC 4 cut(s) 519, 1658, 2211, 2388
TseI GCWGC 2 cut(s) 240, 1336
Tsp45I GTSAC 4 cut(s) 519, 1658, 2211, 2388
TspDTI ATGAA 8 cut(s) 515, 666, 929, 1170, 1197, 1578, 1923, 2076
TspGWI ACGGA 1 cut(s) 1755
TspRI CASTG 3 cut(s) 388, 941, 1599
VneI GTGCAC 1 cut(s) 695
VpaK11BI GGWCC 3 cut(s) 193, 764, 941
XceI RCATGY 2 cut(s) 92, 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 1381
XmiI GTMKAC 2 cut(s) 1528, 1948
XmnI GAANNNNTTC 2 cut(s) 825, 2235
XspI CTAG 4 cut(s) 6, 60, 1434, 2300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.