Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009877

Physical Location & Seq

Genomic Coordinates Reverse (-)

2520598 .. 2521762

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTAATCGTACCAGGCCACAACCCAACCAACTCTTATCTCCCTCCGCCTCTCTCAAAACTTCCATTTTTCAGAGACGCGCAGAAAGCTTTCGTTCTTTGTCATCTCTTTCCCCATTCATATATCTATCTGCAGAATCCAAGTCATAACATTATCAACCAGCAAACCAATAAAATGCAAGCGTTAGCATGCAGTTCTCCTCCTCTGCAGTCCTACTCATTGGGCTTGGGCACCTCCAAGAACCGCCTACTCAGCCGCCGGCAGCTCTGCTGCGACGGTATTTCCTCCGCCTGTTCTCACACTCAATCCAACCGTACTCACTCCCCGGACGACGTCGTTTCTCCCTTGTCCATTTCCACCCAAAGGAGTGTCCAAAAACTGAGCAAGGATTTTGATCCGTTGGTAGACGAGGGTACGAATTTCACAACGAGGCGGGCGTTGTTTGCGAGTATTTTCATGTATTCGCTTTGTGATCCTTCAAGCTCTAGCTTTAGGGGATCCCTCTGTAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016787 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

172

Amino Acids

18.95

Weight (kDa)

9.08

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39830 AT5G39830
fragaria_vesca	FvH4_6g48710 FvH4_6g48710 FvH4_6g48710 FvH4_6g48710
malus_domestica	MD09G1050500.v1.1
prunus_persica	Prupe.3G268300_v2.0.a1 Prupe.3G268300_v2.0.a1
pyrus_communis	pycom111g04160
rosa_chinensis	RchiOBHm_Chr2g0168631
rosa_laevigata	RLG00000021792
rosa_multiflora	Rmu_sc0002416.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082830
rosa_rugosa	Rorug02G0534300 Rorug02G0534300
rosa_samantha	Rh2AG604900 Rh2BG617900 Rh2CG586100 Rh2DG628500
rosa_wichuraiana	Rw2G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	47, 244, 256, 288, 433
AclWI	GGATC	4 cut(s)	389, 467, 492, 505
AcsI	RAATTY	1 cut(s)	418
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	12, 316, 415
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	89, 265, 483, 489
AluI	AGCT	4 cut(s)	89, 265, 483, 489
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	4 cut(s)	389, 467, 492, 505
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	262, 270
ApoI	RAATTY	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	257, 274
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	2 cut(s)	131, 206
BisI	GCNGC	3 cut(s)	256, 263, 271
BlsI	GCNGC	3 cut(s)	257, 264, 272
Bme1390I	CCNGG	2 cut(s)	15, 326
BmiI	GGNNCC	2 cut(s)	232, 499
BmrFI	CCNGG	2 cut(s)	15, 326
BpuMI	CCSGG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse118I	RCCGGY	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	265, 371
BseRI	GAGGAG	2 cut(s)	189, 192
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	257, 274
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	259, 326
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	69
BsmBI	CGTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	394, 472, 497
BspACI	CCGC	5 cut(s)	47, 244, 256, 288, 433
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	264, 372
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	232, 499
BspMAI	CTGCAG	2 cut(s)	135, 210
BspPI	GGATC	4 cut(s)	389, 467, 492, 505
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	394, 472, 497
BssNI	GRCGYC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	278, 314
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	180, 190, 260, 435
BstDEI	CTNAG	2 cut(s)	251, 380
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	397, 475, 500
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	394, 472, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 252, 443
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	13, 324
BstSFI	CTRYAG	2 cut(s)	131, 206
BstSLI	GKGCMC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	257, 274
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	18
Cac8I	GCNNGC	4 cut(s)	180, 190, 260, 435
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	258
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	11, 315, 414
CviAII	CATG	2 cut(s)	189, 457
CviJI	RGCY	7 cut(s)	18, 89, 225, 255, 265, 483, 489
CviKI_1	RGCY	7 cut(s)	18, 89, 225, 255, 265, 483, 489
CviQI	GTAC	3 cut(s)	11, 315, 414
DdeI	CTNAG	2 cut(s)	251, 380
DpnI	GATC	3 cut(s)	396, 474, 499
DpnII	GATC	3 cut(s)	394, 472, 497
EciI	GGCGGA	2 cut(s)	36, 277
EcoRII	CCWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	2 cut(s)	192, 460
FaiI	YATR	5 cut(s)	121, 123, 147, 190, 458
FatI	CATG	2 cut(s)	188, 456
FauI	CCCGC	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	256, 263, 271
Fsp4HI	GCNGC	3 cut(s)	256, 263, 271
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	256, 263, 271
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	2 cut(s)	259, 326
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	192, 460
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	259, 326
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	3 cut(s)	278, 335, 338
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	2 cut(s)	278, 314
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	133, 178, 192, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 252, 443
HpyF3I	CTNAG	2 cut(s)	251, 380
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	2 cut(s)	192, 460
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	394, 472, 497
LpnPI	CCDG	5 cut(s)	27, 173, 272, 304, 339
Lsp1109I	GCAGC	2 cut(s)	257, 274
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	396, 474, 499
MboI	GATC	3 cut(s)	394, 472, 497
MfeI	CAATTG	1 cut(s)	511
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	2 cut(s)	418, 511
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	9 cut(s)	54, 60, 210, 213, 244, 295, 403, 423, 512
MroNI	GCCGGC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	89
MspI	CCGG	2 cut(s)	259, 326
MspR9I	CCNGG	2 cut(s)	15, 326
MunI	CAATTG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	86, 252, 443
NaeI	GCCGGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	3 cut(s)	394, 472, 497
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	192, 460
NlaIV	GGNNCC	2 cut(s)	232, 499
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	136
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	257, 264, 272
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	232, 499
PstI	CTGCAG	2 cut(s)	135, 210
PsuI	RGATCY	1 cut(s)	497
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	3 cut(s)	12, 316, 415
RsaNI	GTAC	3 cut(s)	11, 315, 414
SatI	GCNGC	3 cut(s)	256, 263, 271
Sau3AI	GATC	3 cut(s)	394, 472, 497
ScrFI	CCNGG	2 cut(s)	15, 326
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	6 cut(s)	91, 236, 267, 336, 485, 491
SfcI	CTRYAG	2 cut(s)	131, 206
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	2 cut(s)	418, 511
SsiI	CCGC	5 cut(s)	47, 244, 256, 288, 433
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	13, 324
TaaI	ACNGT	2 cut(s)	278, 314
TaiI	ACGT	1 cut(s)	336
TasI	AATT	2 cut(s)	418, 511
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	262, 270
TspDTI	ATGAA	2 cut(s)	108, 445
TspGWI	ACGGA	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	486
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.