Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009877

Physical Location & Seq

Genomic Coordinates Forward (+)

83296265 .. 83300530

Gene Structure 4266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG604900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAAGTGTTGGCATGCAATTCTAGTACTCCTCTGCAATCTCAAGCATTGAGACTGGGCTCCCCCAAGACCCGCTTCATTGGAAGAAGACAGCTTTTCTTTACTGGCATGTCCTCCGCTTGCTCTGAATCTCAATCAACCTCTACTCATTCTCCAGACGGCGCCGTTTTCCCCTTCCCCATTTCCACTCCAAGGAGTGTTCAAGAACTGAGCAAGGATATCGAGCCATTAGTGCTTAAGAGTACTGCTTTCACAACAAGGAGGGCTTTGTTTGCGAGTATATTCATGTACTCGTTGTATGATCCTTCAAGGTACTTGTCAGCTCTAGCTTTAGGGGATCCATCTGTAACAATTGAAGAAGTGACTCCCCCAGTTTTCGCTTCTGGAGCACTCTTCCCCACTGAGGAAAGAATTGTCGAACTCTTTGAGAAGAACACAAATTCTGTTGTTAACATTTTCGATGTAACATTGCGCCCTCAACTTAATGTAACTGGTGTGGTCGAGGTTCCCGAAGGAAATGGTTCAGGAGTAGTTTGGGATAAACAAGGACACATTGTAACAAACTATCATGTAATTGGTAATGCACTCTCAAGAAATCCAGGTCTCGGGCAGGTTGTTGCACGAGTTAACATTCTAGCATCGGAAGGGGTACAAAAGAATTTTGAGGGAACTCTAGTTGGTGCTGATCGTGCAAAGGATCTTGCTGTCTTGAAGGTAGAAGCCTCTGAAGATCTGTTGAGGCCTATTGTTGTGGGGCAGTCATCTTCTCTAAGGGTTGGGCAGCAATGTTTAGCAATTGGAAATCCATTTGGATTTGATCATACCCTTACTGTTGGAGTTATTAGTGGACTGAATCGAGACATTTTTAGTCAAGCGGGAGTCACCATTAATGGTGGAATTCAAACCGATGCAGCTATCAATCCTGGGAACAGTGGAGGACCCCTGCTAAATTCAAAAGGAAATTTGATTGGGATAAATACTGCAATATTTACTCAGACAGGTTGTTCGAGCTGGTTTGAATGTGGATATAGCTCCAGACCTGATTGCAAATCAACTCAATGTTCGTTATGGAGCTCTTATTTTACAGGTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009536 GO:0009543 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016787 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

364

Amino Acids

38.84

Weight (kDa)

6.12

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	174 - 325	5.9e-30	Trypsin-like peptidase domain
Trypsin	PF00089	175 - 333	1.7e-16	Trypsin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39830 AT5G39830
fragaria_vesca	FvH4_6g48710 FvH4_6g48710 FvH4_6g48710 FvH4_6g48710
malus_domestica	MD09G1050500.v1.1
prunus_persica	Prupe.3G268300_v2.0.a1 Prupe.3G268300_v2.0.a1
pyrus_communis	pycom111g04160
rosa_chinensis	RchiOBHm_Chr2g0168631
rosa_laevigata	RLG00000021792
rosa_multiflora	Rmu_sc0002416.1_g000009
rosa_roxburghii	Rroxscaffold_2G00082830
rosa_rugosa	Rorug02G0534300 Rorug02G0534300
rosa_samantha	Rh2AG604900 Rh2BG617900 Rh2CG586100 Rh2DG628500
rosa_wichuraiana	Rw2G050140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	3 cut(s)	73, 117, 875
AclWI	GGATC	4 cut(s)	296, 332, 345, 705
AcsI	RAATTY	5 cut(s)	439, 658, 897, 949, 961
AcuI	CTGAAG	1 cut(s)	747
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	5 cut(s)	28, 244, 290, 314, 651
AfiI	CCNNNNNNNGG	3 cut(s)	192, 403, 605
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	7 cut(s)	203, 309, 356, 712, 902, 954, 1019
AjnI	CCWGG	2 cut(s)	598, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	7 cut(s)	94, 323, 329, 914, 1011, 1032, 1074
AluI	AGCT	7 cut(s)	94, 323, 329, 914, 1011, 1032, 1074
Alw21I	GWGCWC	2 cut(s)	391, 1076
Alw26I	GTCTC	3 cut(s)	46, 608, 852
AlwI	GGATC	4 cut(s)	296, 332, 345, 705
Ama87I	CYCGRG	1 cut(s)	605
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	2 cut(s)	781, 911
ApoI	RAATTY	5 cut(s)	439, 658, 897, 949, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	988, 1020
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	164, 474
AspS9I	GGNCC	2 cut(s)	938, 1088
AsuHPI	GGTGA	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	938, 1088
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	62, 1076
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	391, 1076
BbvI	GCAGC	2 cut(s)	793, 923
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	2 cut(s)	149, 175
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	2 cut(s)	600, 924
BclI	TGATCA	1 cut(s)	817
BcoDI	GTCTC	3 cut(s)	46, 608, 852
BfaI	CTAG	4 cut(s)	24, 326, 635, 674
BfoI	RGCGCY	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	236
BfuAI	ACCTGC	1 cut(s)	601
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	2 cut(s)	782, 912
BlsI	GCNGC	2 cut(s)	783, 913
BmcAI	AGTACT	2 cut(s)	28, 244
Bme1390I	CCNGG	2 cut(s)	600, 924
Bme18I	GGWCC	2 cut(s)	938, 1088
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	2 cut(s)	938, 1088
BmiI	GGNNCC	6 cut(s)	61, 163, 339, 507, 940, 1090
BmrFI	CCNGG	2 cut(s)	600, 924
BmrI	ACTGGG	2 cut(s)	65, 365
BmsI	GCATC	2 cut(s)	647, 898
BmuI	ACTGGG	2 cut(s)	65, 365
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	3 cut(s)	138, 405, 1018
BpuEI	CTTGAG	2 cut(s)	27, 574
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	191, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 403, 605
Bse1I	ACTGG	4 cut(s)	60, 109, 371, 496
Bse3DI	GCAATG	2 cut(s)	467, 791
BseBI	CCWGG	2 cut(s)	600, 924
BseDI	CCNNGG	2 cut(s)	191, 923
BseLI	CCNNNNNNNGG	3 cut(s)	192, 403, 605
BseMI	GCAATG	2 cut(s)	467, 791
BseMII	CTCAG	3 cut(s)	200, 393, 1007
BseNI	ACTGG	4 cut(s)	60, 109, 371, 496
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	793, 923
BshFI	GGCC	1 cut(s)	742
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	391, 1076
BsiHKCI	CYCGRG	1 cut(s)	605
BslFI	GGGAC	1 cut(s)	1074
BslI	CCNNNNNNNGG	3 cut(s)	192, 403, 605
BsmAI	GTCTC	3 cut(s)	46, 608, 852
BsmFI	GGGAC	1 cut(s)	1074
BsnI	GGCC	1 cut(s)	742
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	62, 391, 1076
Bsp143I	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
BspACI	CCGC	3 cut(s)	73, 117, 875
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	3 cut(s)	201, 394, 1006
BspLI	GGNNCC	6 cut(s)	61, 163, 339, 507, 940, 1090
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	4 cut(s)	296, 332, 345, 705
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	467, 791
BsrI	ACTGG	4 cut(s)	60, 109, 371, 496
BssECI	CCNNGG	2 cut(s)	191, 923
BssMI	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	600, 924
Bst4CI	ACNGT	2 cut(s)	832, 932
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	16, 121
BstDEI	CTNAG	4 cut(s)	209, 402, 770, 993
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	164, 474
BstKTI	GATC	6 cut(s)	304, 340, 688, 700, 733, 820
BstMAI	GTCTC	3 cut(s)	46, 608, 852
BstMBI	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 272, 386, 689
BstNI	CCWGG	2 cut(s)	600, 924
BstNSI	RCATGY	2 cut(s)	18, 112
BstSCI	CCNGG	2 cut(s)	598, 922
BstV1I	GCAGC	2 cut(s)	793, 923
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	3 cut(s)	337, 697, 730
BstYI	RGATCY	3 cut(s)	337, 697, 730
BsuRI	GGCC	1 cut(s)	742
BtsIMutI	CAGTG	2 cut(s)	399, 937
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	16, 121
CfoI	GCGC	2 cut(s)	164, 474
Cfr13I	GGNCC	2 cut(s)	938, 1088
Csp6I	GTAC	5 cut(s)	27, 243, 289, 313, 650
CviAII	CATG	4 cut(s)	15, 109, 286, 569
CviQI	GTAC	5 cut(s)	27, 243, 289, 313, 650
DdeI	CTNAG	4 cut(s)	209, 402, 770, 993
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	6 cut(s)	303, 339, 687, 699, 732, 819
DpnII	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Ecl136II	GAGCTC	1 cut(s)	1074
Eco130I	CCWWGG	1 cut(s)	191
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	2 cut(s)	62, 1076
Eco31I	GGTCTC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	938, 1088
Eco53kI	GAGCTC	1 cut(s)	1074
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	605
EcoICRI	GAGCTC	1 cut(s)	1074
EcoO109I	RGGNCCY	2 cut(s)	938, 1088
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	2 cut(s)	598, 922
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	62, 1076
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	4 cut(s)	18, 112, 289, 572
FaiI	YATR	9 cut(s)	16, 110, 281, 287, 300, 570, 822, 1029, 1069
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 250, 282
FaqI	GGGAC	1 cut(s)	1074
FatI	CATG	4 cut(s)	14, 108, 285, 568
FauI	CCCGC	2 cut(s)	80, 868
FbaI	TGATCA	1 cut(s)	817
Fnu4HI	GCNGC	2 cut(s)	782, 912
FriOI	GRGCYC	2 cut(s)	62, 1076
Fsp4HI	GCNGC	2 cut(s)	782, 912
FspBI	CTAG	4 cut(s)	24, 326, 635, 674
GlaI	GCGC	2 cut(s)	163, 473
GluI	GCNGC	2 cut(s)	782, 912
GsuI	CTGGAG	3 cut(s)	138, 405, 1018
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	742
HhaI	GCGC	2 cut(s)	164, 474
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	18, 112, 289, 572
Hin6I	GCGC	2 cut(s)	162, 472
HinP1I	GCGC	2 cut(s)	162, 472
HincII	GTYRAC	2 cut(s)	451, 628
HindII	GTYRAC	2 cut(s)	451, 628
HinfI	GANTC	4 cut(s)	128, 364, 853, 879
HpaI	GTTAAC	2 cut(s)	451, 628
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	3 cut(s)	451, 628, 848
Hpy188I	TCNGA	4 cut(s)	127, 643, 727, 996
Hpy188III	TCNNGA	9 cut(s)	155, 203, 384, 509, 525, 591, 709, 857, 1035
Hpy8I	GTNNAC	3 cut(s)	451, 628, 848
HpyAV	CCTTC	5 cut(s)	184, 315, 506, 638, 706
HpyCH4III	ACNGT	2 cut(s)	832, 932
HpyCH4V	TGCA	9 cut(s)	4, 18, 37, 584, 620, 692, 911, 983, 1047
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 272, 386, 689
HpyF3I	CTNAG	4 cut(s)	209, 402, 770, 993
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	18, 112, 289, 572
HspAI	GCGC	2 cut(s)	162, 472
KasI	GGCGCC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	817
KspAI	GTTAAC	2 cut(s)	451, 628
Kzo9I	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
LmnI	GCTCC	4 cut(s)	65, 386, 1037, 1071
Lsp1109I	GCAGC	2 cut(s)	793, 923
LweI	GCATC	2 cut(s)	647, 898
MaeI	CTAG	4 cut(s)	24, 326, 635, 674
MaeIII	GTNAC	6 cut(s)	346, 361, 463, 487, 556, 880
MalI	GATC	6 cut(s)	303, 339, 687, 699, 732, 819
MboI	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
MboII	GAAGA	7 cut(s)	96, 99, 368, 385, 442, 740, 756
MfeI	CAATTG	2 cut(s)	351, 795
MflI	RGATCY	3 cut(s)	337, 697, 730
MhlI	GDGCHC	3 cut(s)	62, 391, 1076
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	358, 888
MmeI	TCCRAC	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	5 cut(s)	237, 450, 483, 627, 888
MspCI	CTTAAG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	600, 924
MunI	CAATTG	2 cut(s)	351, 795
MvaI	CCWGG	2 cut(s)	600, 924
MwoI	GCNNNNNNNGC	4 cut(s)	232, 272, 386, 689
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
NlaIII	CATG	4 cut(s)	18, 112, 289, 572
NlaIV	GGNNCC	6 cut(s)	61, 163, 339, 507, 940, 1090
NmuCI	GTSAC	2 cut(s)	361, 880
NspI	RCATGY	2 cut(s)	18, 112
PaeI	GCATGC	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	742
PcsI	WCGNNNNNNNCGW	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	128, 853
PkrI	GCNGC	2 cut(s)	783, 913
PleI	GAGTC	2 cut(s)	358, 887
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	2 cut(s)	358, 887
PpuMI	RGGWCCY	2 cut(s)	938, 1088
PshBI	ATTAAT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	1076
Psp5II	RGGWCCY	2 cut(s)	938, 1088
Psp6I	CCWGG	2 cut(s)	598, 922
PspGI	CCWGG	2 cut(s)	598, 922
PspN4I	GGNNCC	6 cut(s)	61, 163, 339, 507, 940, 1090
PspPI	GGNCC	2 cut(s)	938, 1088
PspPPI	RGGWCCY	2 cut(s)	938, 1088
PsuI	RGATCY	3 cut(s)	337, 697, 730
RsaI	GTAC	5 cut(s)	28, 244, 290, 314, 651
RsaNI	GTAC	5 cut(s)	27, 243, 289, 313, 650
SacI	GAGCTC	1 cut(s)	1076
SaqAI	TTAA	5 cut(s)	237, 450, 483, 627, 888
SatI	GCNGC	2 cut(s)	782, 912
Sau3AI	GATC	6 cut(s)	301, 337, 685, 697, 730, 817
Sau96I	GGNCC	2 cut(s)	938, 1088
ScaI	AGTACT	2 cut(s)	28, 244
SchI	GAGTC	2 cut(s)	358, 888
ScrFI	CCNGG	2 cut(s)	600, 924
SduI	GDGCHC	3 cut(s)	62, 391, 1076
SfaNI	GCATC	2 cut(s)	647, 898
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	2 cut(s)	938, 1088
SmlI	CTYRAG	3 cut(s)	42, 236, 589
SmoI	CTYRAG	3 cut(s)	42, 236, 589
SphI	GCATGC	1 cut(s)	18
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	3 cut(s)	73, 117, 875
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	4 cut(s)	24, 326, 635, 674
SstI	GAGCTC	1 cut(s)	1076
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	2 cut(s)	598, 922
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	832, 932
TaqI	TCGA	6 cut(s)	222, 417, 459, 501, 856, 1007
TatI	WGTACW	3 cut(s)	26, 242, 288
TfiI	GAWTC	2 cut(s)	128, 853
Tru1I	TTAA	5 cut(s)	237, 450, 483, 627, 888
Tru9I	TTAA	5 cut(s)	237, 450, 483, 627, 888
TscAI	CASTG	2 cut(s)	406, 937
TseFI	GTSAC	2 cut(s)	361, 880
TseI	GCWGC	2 cut(s)	781, 911
Tsp45I	GTSAC	2 cut(s)	361, 880
TspDTI	ATGAA	2 cut(s)	67, 274
TspRI	CASTG	2 cut(s)	406, 937
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	938, 1088
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	5 cut(s)	439, 658, 897, 949, 961
XceI	RCATGY	2 cut(s)	18, 112
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	4 cut(s)	24, 326, 635, 674
ZrmI	AGTACT	2 cut(s)	28, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.