Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017094

Physical Location & Seq

Genomic Coordinates Forward (+)

16799218 .. 16801102

Gene Structure 1885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTACGTAAGAGCACTTCCGACGACGGATGTGAATCGGAACACAGAGTGGTTCACATATCCTGGTGTTTGGACTACTTATATTCTCATCCTCTTCTTCTCTTGGCTCCTCGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTTCATCTCGCTCATTTCACCGTCACGTATCATTCCTTCCATTGGAAGAAGGGAACACCATTTGGAGATGATCAAGGAGTCTATAATAGATTGACTTGGTGGGAACAGATTGATAATGGCAAGCAGCTTACACGTAATCGCAAATTTCTCACCGTTGTTCCTGTTGTCTTGTACTTGATAGCCTCTCACACAACAGACTATCAGCACCCGATGCTCTTTCTCAACACACTGGCTGTATTTGTCATGGTGGTTGCGAAATTCCCGCACATGCACAAGGTCCGCATATTTGGAATCAATGGAGACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

154

Amino Acids

18.09

Weight (kDa)

9.34

Isoelectric Point (pI)

21.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	12 - 146	1.4e-50	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42000
fragaria_vesca	FvH4_5g11390
malus_domestica	MD06G1114100.v1.1 MD14G1135400.v1.1
prunus_persica	Prupe.5G126900_v2.0.a1
pyrus_communis	pycom06g10670
rosa_chinensis	RchiOBHm_Chr7g0186481
rosa_laevigata	RLG00000004842
rosa_multiflora	Rmu_sc0000645.1_g000032
rosa_rugosa	Rorug06G0474600
rosa_samantha	Rh7BG082500
rosa_wichuraiana	Rw7G006810 Rw7G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	419, 436
AcsI	RAATTY	2 cut(s)	299, 413
AdeI	CACNNNGTG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	5, 329
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	287
AjnI	CCWGG	2 cut(s)	61, 136
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	1 cut(s)	450
ApeKI	GCWGC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	299, 413
AspS9I	GGNCC	2 cut(s)	150, 433
AsuHPI	GGTGA	2 cut(s)	166, 298
AvaII	GGWCC	2 cut(s)	150, 433
BarI	GAAGNNNNNNTAC	3 cut(s)	32, 176, 208
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	292
BciT130I	CCWGG	2 cut(s)	63, 138
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	450
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	2 cut(s)	63, 138
Bme18I	GGWCC	2 cut(s)	150, 433
BmgT120I	GGNCC	2 cut(s)	150, 433
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	63, 138
BmsI	GCATC	2 cut(s)	150, 357
BpiI	GAAGAC	1 cut(s)	115
BsaAI	YACGTR	3 cut(s)	7, 183, 290
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	63, 138
BseGI	GGATG	2 cut(s)	34, 87
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	450
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	419, 436
BspLI	GGNNCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	63, 138
Bst4CI	ACNGT	2 cut(s)	178, 310
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstBAI	YACGTR	3 cut(s)	7, 183, 290
BstC8I	GCNNGC	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	34, 87
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	2 cut(s)	63, 138
BstNSI	RCATGY	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	61, 136
BstSNI	TACGTA	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	34, 87
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	150, 433
Csp6I	GTAC	2 cut(s)	4, 328
CviAII	CATG	2 cut(s)	400, 424
CviJI	RGCY	4 cut(s)	106, 283, 338, 389
CviKI_1	RGCY	4 cut(s)	106, 283, 338, 389
CviQI	GTAC	2 cut(s)	4, 328
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DraIII	CACNNNGTG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	150, 433
EcoRII	CCWGG	2 cut(s)	61, 136
FaeI	CATG	2 cut(s)	403, 427
FaiI	YATR	6 cut(s)	58, 81, 240, 401, 425, 440
FatI	CATG	2 cut(s)	399, 423
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	41, 74
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	403, 427
HinfI	GANTC	3 cut(s)	34, 234, 447
HphI	GGTGA	2 cut(s)	166, 298
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	21, 39
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	2 cut(s)	199, 202
HpyCH4III	ACNGT	2 cut(s)	178, 310
HpyCH4IV	ACGT	3 cut(s)	6, 182, 289
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpySE526I	ACGT	3 cut(s)	6, 182, 289
Hsp92II	CATG	2 cut(s)	403, 427
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	48, 75, 123, 150, 330, 371
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	150, 357
MaeII	ACGT	3 cut(s)	6, 182, 289
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	85, 88, 115, 214
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	299, 413
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	3 cut(s)	101, 119, 349
MspR9I	CCNGG	2 cut(s)	63, 138
MvaI	CCWGG	2 cut(s)	63, 138
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	403, 427
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	34, 447
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Ppu21I	YACGTR	3 cut(s)	7, 183, 290
Psp6I	CCWGG	2 cut(s)	61, 136
PspGI	CCWGG	2 cut(s)	61, 136
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	150, 433
RsaI	GTAC	2 cut(s)	5, 329
RsaNI	GTAC	2 cut(s)	4, 328
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	2 cut(s)	150, 433
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	63, 138
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	9, 185, 285, 292, 435
SfaNI	GCATC	2 cut(s)	150, 357
SinI	GGWCC	2 cut(s)	150, 433
SnaBI	TACGTA	1 cut(s)	7
Sse9I	AATT	2 cut(s)	299, 413
SsiI	CCGC	2 cut(s)	419, 436
StyD4I	CCNGG	2 cut(s)	61, 136
TaaI	ACNGT	2 cut(s)	178, 310
TaiI	ACGT	3 cut(s)	9, 185, 292
TasI	AATT	2 cut(s)	299, 413
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	34, 447
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	2 cut(s)	41, 109
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	150, 433
XapI	RAATTY	2 cut(s)	299, 413
XceI	RCATGY	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.