Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017094

Physical Location & Seq

Genomic Coordinates Reverse (-)

25352174 .. 25355068

Gene Structure 2895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1114100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTACGTAACGGCGGTGCGACCGACGGATCTGAATCGGAACACGGAGTGGTTCACGTACCCCGGAGTCTGGACCACCTACATTCTTATGGTGTTTTTCTCGTGGCTCACCGTTCTCTGCCTCTTCTCTTGCTCTCCCGGCATGGCCTGGACCGTCGTCCACCTCTCCCACTTCCTCGTTACTTATCACTTTTTTCACTGGAAGAAAGGAACACCATTTGCAGATGATCAGGGTATCTACAATGCACTGACATGGTGGGAGCAAATAGACAATGGCAACCAACTCACTCGAAACAGAAAGTTTCTAACTGTTGTGCCTGTTGTGTTGTACTTGATAGCCTCACACACGACGGACTATCAAAATCCAATGCTCATCTTTAACACGCTAGCAGTTTTTGTGTTGGTAGTTGCAAAGTTCCCAAACATGCACAAGGTTCGTATATTCGGAATCAACGCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

155

Amino Acids

18.04

Weight (kDa)

8.61

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	12 - 146	1.1e-51	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42000
fragaria_vesca	FvH4_5g11390
malus_domestica	MD06G1114100.v1.1 MD14G1135400.v1.1
prunus_persica	Prupe.5G126900_v2.0.a1
pyrus_communis	pycom06g10670
rosa_chinensis	RchiOBHm_Chr7g0186481
rosa_laevigata	RLG00000004842
rosa_multiflora	Rmu_sc0000645.1_g000032
rosa_rugosa	Rorug06G0474600
rosa_samantha	Rh7BG082500
rosa_wichuraiana	Rw7G006810 Rw7G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	48
AfaI	GTAC	3 cut(s)	5, 59, 329
AfiI	CCNNNNNNNGG	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	146
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	72, 150
AsuC2I	CCSGG	2 cut(s)	63, 138
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	72, 150
BauI	CACGAG	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	2 cut(s)	226, 457
BcnI	CCSGG	2 cut(s)	63, 138
BfaI	CTAG	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	63, 138, 148
Bme18I	GGWCC	2 cut(s)	72, 150
BmgT120I	GGNCC	2 cut(s)	72, 150
BmrFI	CCNGG	3 cut(s)	63, 138, 148
BmtI	GCTAGC	1 cut(s)	389
BoxI	GACNNNNGTC	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	63, 138
BsaAI	YACGTR	2 cut(s)	7, 57
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	63, 138
BslI	CCNNNNNNNGG	1 cut(s)	69
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	28, 226, 457
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	146
BspOI	GCTAGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	28, 226, 457
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	112, 154, 310
Bst6I	CTCTTC	1 cut(s)	128
BstBAI	YACGTR	2 cut(s)	7, 57
BstC8I	GCNNGC	1 cut(s)	387
BstKTI	GATC	3 cut(s)	31, 229, 460
BstMBI	GATC	3 cut(s)	28, 226, 457
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	427
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	61, 136, 146
BstSNI	TACGTA	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	146
BtsIMutI	CAGTG	3 cut(s)	196, 245, 460
Cac8I	GCNNGC	1 cut(s)	387
Cfr13I	GGNCC	2 cut(s)	72, 150
Csp6I	GTAC	3 cut(s)	4, 58, 328
CviAII	CATG	3 cut(s)	142, 252, 424
CviJI	RGCY	3 cut(s)	106, 146, 338
CviKI_1	RGCY	3 cut(s)	106, 146, 338
CviQI	GTAC	3 cut(s)	4, 58, 328
DpnI	GATC	3 cut(s)	30, 228, 459
DpnII	GATC	3 cut(s)	28, 226, 457
DraIII	CACNNNGTG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco105I	TACGTA	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	72, 150
EcoRII	CCWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	145, 255, 427
FaiI	YATR	5 cut(s)	89, 143, 253, 425, 440
FatI	CATG	3 cut(s)	141, 251, 423
FbaI	TGATCA	2 cut(s)	226, 457
FspBI	CTAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	63, 138
Hin1II	CATG	3 cut(s)	145, 255, 427
HinfI	GANTC	3 cut(s)	34, 66, 447
HpaII	CCGG	2 cut(s)	63, 138
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	54, 160
Hpy188I	TCNGA	3 cut(s)	33, 39, 446
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	54, 160
Hpy99I	CGWCG	3 cut(s)	28, 158, 352
HpyCH4III	ACNGT	3 cut(s)	112, 154, 310
HpyCH4IV	ACGT	2 cut(s)	6, 56
HpyCH4V	TGCA	4 cut(s)	221, 245, 410, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	6, 56
Hsp92II	CATG	3 cut(s)	145, 255, 427
Ksp22I	TGATCA	2 cut(s)	226, 457
Kzo9I	GATC	3 cut(s)	28, 226, 457
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	8 cut(s)	55, 76, 133, 151, 160, 184, 215, 330
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	2 cut(s)	6, 56
MaeIII	GTNAC	2 cut(s)	7, 178
MalI	GATC	3 cut(s)	30, 228, 459
MboI	GATC	3 cut(s)	28, 226, 457
MboII	GAAGA	2 cut(s)	115, 214
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	131, 173, 185, 349
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	86, 250
MspI	CCGG	2 cut(s)	63, 138
MspR9I	CCNGG	3 cut(s)	63, 138, 148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	63, 138
NdeII	GATC	3 cut(s)	28, 226, 457
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	145, 255, 427
NspI	RCATGY	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	34, 447
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	2 cut(s)	7, 57
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspPI	GGNCC	2 cut(s)	72, 150
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	3 cut(s)	5, 59, 329
RsaNI	GTAC	3 cut(s)	4, 58, 328
RseI	CAYNNNNRTG	2 cut(s)	86, 250
SaqAI	TTAA	1 cut(s)	378
Sau3AI	GATC	3 cut(s)	28, 226, 457
Sau96I	GGNCC	2 cut(s)	72, 150
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	3 cut(s)	63, 138, 148
SetI	ASST	5 cut(s)	9, 59, 80, 165, 435
SinI	GGWCC	2 cut(s)	72, 150
SmiMI	CAYNNNNRTG	2 cut(s)	86, 250
SnaBI	TACGTA	1 cut(s)	7
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	61, 136, 146
TaaI	ACNGT	3 cut(s)	112, 154, 310
TaiI	ACGT	2 cut(s)	9, 59
TaqI	TCGA	1 cut(s)	289
TaqII	GACCGA	1 cut(s)	37
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	34, 447
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	203, 252
TspGWI	ACGGA	3 cut(s)	41, 59, 365
TspRI	CASTG	2 cut(s)	203, 252
VpaK11BI	GGWCC	2 cut(s)	72, 150
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.