Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017094

Physical Location & Seq

Genomic Coordinates Reverse (-)

5843321 .. 5845134

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTACGTGACGGCGGTGCGACCGACGGATCTGAATCGGAACACGGAATGGTTTACGTACCCCGGCGTTTGGACCACCTACATTCTCATCGTGTTCTTTTCATGGCTCATCGTTACGTACCATTTCTTTCACTGGAAGAAGGGAACACCATTTGCTGATGACCAAGGTATCTACAATGCGCTTACTTGGTGGGAGCAGATAGACAATGGCAACCAGCTCACTCGAAACAGAAAGTTTCTAACTGTCGTGCCTGTTGTGTTGTATTTGATAGCATCTCATACAACAGACTATCAAAATCCAATGCTCTTCTTCAACACACTAGCAGTTTTTGTGCTGGTAGTGGCAAAGTTCCCAAACATGCACAAGGTTCGCATATTTGGAATCAATGGTGATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

132

Amino Acids

15.6

Weight (kDa)

8.96

Isoelectric Point (pI)

17.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	32 - 124	1.5e-37	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42000
fragaria_vesca	FvH4_5g11390
malus_domestica	MD06G1114100.v1.1 MD14G1135400.v1.1
prunus_persica	Prupe.5G126900_v2.0.a1
pyrus_communis	pycom06g10670
rosa_chinensis	RchiOBHm_Chr7g0186481
rosa_laevigata	RLG00000004842
rosa_multiflora	Rmu_sc0000645.1_g000032
rosa_rugosa	Rorug06G0474600
rosa_samantha	Rh7BG082500
rosa_wichuraiana	Rw7G006810 Rw7G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	5, 59, 119
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	313
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	72
AsuC2I	CCSGG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	72
BaeI	ACNNNNGTAYC	2 cut(s)	151, 184
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcnI	CCSGG	1 cut(s)	63
BfaI	CTAG	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	63
BsaAI	YACGTR	3 cut(s)	7, 57, 117
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	61, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	61, 163
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	28, 391
BspACI	CCGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	61, 163
BssMI	GATC	2 cut(s)	28, 391
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	311
BstBAI	YACGTR	3 cut(s)	7, 57, 117
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	2 cut(s)	31, 394
BstMBI	GATC	2 cut(s)	28, 391
BstMCI	CGRYCG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	61
BstSNI	TACGTA	2 cut(s)	57, 117
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	130
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	4, 58, 118
CviAII	CATG	2 cut(s)	102, 358
CviJI	RGCY	2 cut(s)	106, 217
CviKI_1	RGCY	2 cut(s)	106, 217
CviQI	GTAC	3 cut(s)	4, 58, 118
DpnI	GATC	2 cut(s)	30, 393
DpnII	GATC	2 cut(s)	28, 391
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco105I	TACGTA	2 cut(s)	57, 117
Eco130I	CCWWGG	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	105, 361
FaiI	YATR	4 cut(s)	103, 279, 359, 374
FatI	CATG	2 cut(s)	101, 357
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	180
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	105, 361
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	2 cut(s)	34, 381
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	33, 39, 398
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	6, 56, 116
HpyCH4V	TGCA	1 cut(s)	361
HpySE526I	ACGT	3 cut(s)	6, 56, 116
Hsp92II	CATG	2 cut(s)	105, 361
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	2 cut(s)	28, 391
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	5 cut(s)	76, 118, 227, 264, 320
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	3 cut(s)	6, 56, 116
MaeIII	GTNAC	2 cut(s)	7, 112
MalI	GATC	2 cut(s)	30, 393
MboI	GATC	2 cut(s)	28, 391
MboII	GAAGA	3 cut(s)	148, 298, 301
MflI	RGATCY	1 cut(s)	28
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	28, 391
NlaIII	CATG	2 cut(s)	105, 361
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	34, 381
Ppu21I	YACGTR	3 cut(s)	7, 57, 117
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	3 cut(s)	5, 59, 119
RsaNI	GTAC	3 cut(s)	4, 58, 118
SapI	GCTCTTC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	28, 391
Sau96I	GGNCC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	7 cut(s)	9, 59, 80, 119, 169, 219, 369
SfaNI	GCATC	1 cut(s)	281
SinI	GGWCC	1 cut(s)	72
SnaBI	TACGTA	2 cut(s)	57, 117
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	9, 59, 119
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	34, 381
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	2 cut(s)	41, 59
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.