Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017094

Physical Location & Seq

Genomic Coordinates Forward (+)

6463234 .. 6465661

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTACGTCACGGCGGTGCGCCCGACGGATCTGAATCGGAACACGGAATGGTTCACGTACCCTGGCGTATGGACCACCTACATTCTCATCGTCTTCTTCTCTTGGCTCATCGTCCTCTGCCTCTTCTCTTGCTCTCCCGGCATGGCCTGGACCGTCGTCCACCTCGCTCATTTTCTGGTTACGTACCAATTCTTTCACTGGAAGAAGGGAACACCATTTGCTGATGACCAAGGTATCTACAACGCACTTACTTGGTGGGAGCAGATAGACAATGGCAACCAGCTCACTCGAAACCGGAAGTTTCTAACTGTTGTACCTGTTGTGTTGTATTTGATAGCATCTCATACAACAGACTATCAAAATCCGATGCTCTTCTTCAACACACTAGCAGTTTTTGTGCTGGTAGTGGCAAAGTTCCCAAACATGCACAAGGTTCGTATATTTGGAATCAATGGTGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

155

Amino Acids

18.01

Weight (kDa)

8.6

Isoelectric Point (pI)

20.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	12 - 146	1.3e-51	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0017094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42000
fragaria_vesca	FvH4_5g11390
malus_domestica	MD06G1114100.v1.1 MD14G1135400.v1.1
prunus_persica	Prupe.5G126900_v2.0.a1
pyrus_communis	pycom06g10670
rosa_chinensis	RchiOBHm_Chr7g0186481
rosa_laevigata	RLG00000004842
rosa_multiflora	Rmu_sc0000645.1_g000032
rosa_rugosa	Rorug06G0474600
rosa_samantha	Rh7BG082500
rosa_wichuraiana	Rw7G006810 Rw7G007050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	36
AfaI	GTAC	4 cut(s)	5, 59, 185, 315
AgsI	TTSAA	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	61, 146
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	72, 150
AsuC2I	CCSGG	1 cut(s)	138
AvaII	GGWCC	2 cut(s)	72, 150
BaeI	ACNNNNGTAYC	4 cut(s)	217, 250, 297, 330
BbsI	GAAGAC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	2 cut(s)	63, 148
BcnI	CCSGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	63, 138, 148
Bme18I	GGWCC	2 cut(s)	72, 150
BmgT120I	GGNCC	2 cut(s)	72, 150
BmrFI	CCNGG	3 cut(s)	63, 138, 148
BmsI	GCATC	2 cut(s)	347, 357
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	138
BsaAI	YACGTR	2 cut(s)	57, 183
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	61, 229
BsaWI	WCCGGW	1 cut(s)	294
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	63, 148
BseDI	CCNNGG	2 cut(s)	61, 229
BseJI	GATNNNNATC	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	2 cut(s)	138, 295
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	61, 229
BssMI	GATC	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	229
Bst2UI	CCWGG	2 cut(s)	63, 148
Bst4CI	ACNGT	2 cut(s)	154, 310
Bst6I	CTCTTC	2 cut(s)	128, 377
BstBAI	YACGTR	2 cut(s)	57, 183
BstEII	GGTNACC	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	63, 148
BstNSI	RCATGY	1 cut(s)	427
BstPAI	GACNNNNGTC	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	3 cut(s)	61, 136, 146
BstSNI	TACGTA	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	72, 150
Csp6I	GTAC	4 cut(s)	4, 58, 184, 314
CviAII	CATG	2 cut(s)	142, 424
CviJI	RGCY	3 cut(s)	106, 146, 283
CviKI_1	RGCY	3 cut(s)	106, 146, 283
CviQI	GTAC	4 cut(s)	4, 58, 184, 314
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	128, 377
EarI	CTCTTC	2 cut(s)	128, 377
Eco105I	TACGTA	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	72, 150
Eco91I	GGTNACC	1 cut(s)	455
EcoO65I	GGTNACC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	61, 146
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	2 cut(s)	145, 427
FaiI	YATR	5 cut(s)	70, 143, 345, 425, 440
FatI	CATG	2 cut(s)	141, 423
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	138, 295
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	145, 427
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	34, 447
HpaII	CCGG	2 cut(s)	138, 295
Hpy166II	GTNNAC	2 cut(s)	54, 160
Hpy188I	TCNGA	4 cut(s)	33, 39, 366, 464
Hpy8I	GTNNAC	2 cut(s)	54, 160
Hpy99I	CGWCG	2 cut(s)	28, 158
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	154, 310
HpyCH4IV	ACGT	3 cut(s)	6, 56, 182
HpyCH4V	TGCA	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpySE526I	ACGT	3 cut(s)	6, 56, 182
Hsp92II	CATG	2 cut(s)	145, 427
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	259
LweI	GCATC	2 cut(s)	347, 357
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	3 cut(s)	6, 56, 182
MaeIII	GTNAC	3 cut(s)	7, 178, 455
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	6 cut(s)	85, 88, 115, 214, 364, 367
MflI	RGATCY	1 cut(s)	28
MluCI	AATT	1 cut(s)	188
MnlI	CCTC	3 cut(s)	125, 131, 173
MslI	CAYNNNNRTG	1 cut(s)	14
MspI	CCGG	2 cut(s)	138, 295
MspR9I	CCNGG	3 cut(s)	63, 138, 148
MvaI	CCWGG	2 cut(s)	63, 148
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	145, 427
NmuCI	GTSAC	2 cut(s)	7, 455
NspI	RCATGY	1 cut(s)	427
OliI	CACNNNNGTG	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	34, 447
Ppu21I	YACGTR	2 cut(s)	57, 183
PshAI	GACNNNNGTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	61, 146
PspEI	GGTNACC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	61, 146
PspPI	GGNCC	2 cut(s)	72, 150
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	4 cut(s)	5, 59, 185, 315
RsaNI	GTAC	4 cut(s)	4, 58, 184, 314
RseI	CAYNNNNRTG	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	377
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	2 cut(s)	72, 150
ScrFI	CCNGG	3 cut(s)	63, 138, 148
SfaNI	GCATC	2 cut(s)	347, 357
SinI	GGWCC	2 cut(s)	72, 150
SmiMI	CAYNNNNRTG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	183
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	61, 136, 146
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	154, 310
TaiI	ACGT	3 cut(s)	9, 59, 185
TaqI	TCGA	1 cut(s)	289
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	34, 447
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	2 cut(s)	7, 455
Tsp45I	GTSAC	2 cut(s)	7, 455
TspGWI	ACGGA	2 cut(s)	41, 59
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	72, 150
XceI	RCATGY	1 cut(s)	427
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.