AT5G42070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017565
Physical Location & Seq
Reverse (-)
16818984 .. 16820195
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42070.1

Sequence Viewer

Length: 495 bp
ATGGCGAATTCCATTTCATCAATATCTCTGCCTCGATGTTTCATCTTCAACAATGGTAGTCACAAATCAAGGCCATGGCCAAGCTCAAGCAGTTTCTTTCTCAACAAATCATCAAAGCATCATCCTCATCCACTACTCTCTCTTTCTTCTTCGCCGTCTTCCGTCGTAGAAACTGATAATGACGACGACAACGACCTCACTTTCAGTGGTTGCAGAGCGTGTGGGAAAGAAGAGAAAGAGAGTGGGTGTAATGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCCGGTTTCGGTTGGTGGCCAATTAAGGCTTACAGGCCTTGTCCCGCGTTTGTTGAGGCCGGAGGTAGATACCGCCGCATAGGGCAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTCCACTTCTGTAGACACCAGTGATTCACTACTACGCCAGACAAAGCCAACAAGTTCTAGCAAAAGTTCAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.68

Weight (kDa)

8.88

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42070
fragaria_vesca FvH4_5g04930
prunus_persica Prupe.5G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194141
rosa_laevigata RLG00000004214
rosa_roxburghii Rroxscaffold_3G00261520
rosa_rugosa Rorug07G0014100
rosa_samantha Rh7AG141200 Rh7BG141900 Rh7CG145300 Rh7DG142700
rosa_wichuraiana Rw7G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 429
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 333, 361, 364
AcoI YGGCCR 2 cut(s) 77, 305
AcsI RAATTY 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 3 cut(s) 49, 269, 486
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
AoxI GGCC 5 cut(s) 71, 77, 305, 323, 345
ApoI RAATTY 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 266, 416
BalI TGGCCA 2 cut(s) 79, 307
BbsI GAAGAC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 1 cut(s) 426
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 74, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 74, 289
BseGI GGATG 2 cut(s) 121, 127
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 5 cut(s) 73, 79, 307, 325, 347
BsiSI CCGG 2 cut(s) 291, 348
BslFI GGGAC 2 cut(s) 272, 315
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 2 cut(s) 272, 315
BsnI GGCC 5 cut(s) 73, 79, 307, 325, 347
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 3 cut(s) 333, 361, 364
BspANI GGCC 5 cut(s) 73, 79, 307, 325, 347
BspFNI CGCG 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 74, 289
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 121, 127
BstFNI CGCG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 426
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 5 cut(s) 73, 79, 307, 325, 347
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 121, 127
BtsIMutI CAGTG 2 cut(s) 211, 442
CviAII CATG 2 cut(s) 75, 379
CviJI RGCY 8 cut(s) 73, 79, 84, 307, 317, 325, 347, 463
CviKI_1 RGCY 8 cut(s) 73, 79, 84, 307, 317, 325, 347, 463
EaeI YGGCCR 2 cut(s) 77, 305
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 78, 382
FaiI YATR 3 cut(s) 76, 368, 380
FaqI GGGAC 2 cut(s) 272, 315
FatI CATG 2 cut(s) 74, 378
FauI CCCGC 1 cut(s) 340
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 1 cut(s) 364
FokI GGATG 2 cut(s) 108, 114
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 1 cut(s) 474
GluI GCNGC 1 cut(s) 364
HaeIII GGCC 5 cut(s) 73, 79, 307, 325, 347
HapII CCGG 2 cut(s) 291, 348
Hin1II CATG 2 cut(s) 78, 382
HinfI GANTC 3 cut(s) 265, 407, 440
HpaII CCGG 2 cut(s) 291, 348
HphI GGTGA 2 cut(s) 266, 416
Hpy166II GTNNAC 1 cut(s) 430
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 2 cut(s) 167, 188
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 213, 281, 392
Hsp92II CATG 2 cut(s) 78, 382
LpnPI CCDG 5 cut(s) 304, 307, 361, 448, 467
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 3 cut(s) 59, 254, 404
MboII GAAGA 5 cut(s) 37, 138, 141, 150, 242
MlsI TGGCCA 2 cut(s) 79, 307
MluCI AATT 2 cut(s) 7, 309
MluNI TGGCCA 2 cut(s) 79, 307
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 7 cut(s) 42, 135, 206, 337, 344, 379, 427
Mox20I TGGCCA 2 cut(s) 79, 307
MscI TGGCCA 2 cut(s) 79, 307
MseI TTAA 1 cut(s) 312
Msp20I TGGCCA 2 cut(s) 79, 307
MspI CCGG 2 cut(s) 291, 348
MspR9I CCNGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 335
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 74
NlaIII CATG 2 cut(s) 78, 382
NmuCI GTSAC 3 cut(s) 59, 254, 404
PceI AGGCCT 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 265, 440
PkrI GCNGC 1 cut(s) 365
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 1 cut(s) 364
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 291
SetI ASST 5 cut(s) 86, 198, 274, 355, 390
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 2 cut(s) 7, 309
SseBI AGGCCT 1 cut(s) 325
SsiI CCGC 3 cut(s) 333, 361, 364
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 1 cut(s) 34
TasI AATT 2 cut(s) 7, 309
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 265, 440
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 211, 442
TseFI GTSAC 3 cut(s) 59, 254, 404
Tsp45I GTSAC 3 cut(s) 59, 254, 404
TspDTI ATGAA 2 cut(s) 6, 31
TspGWI ACGGA 3 cut(s) 151, 273, 277
TspRI CASTG 2 cut(s) 211, 442
XapI RAATTY 1 cut(s) 7
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.