FvH4_5g04930

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
2930114 .. 2931418
1305 bp
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UTR
Exon/CDS
Intron
FvH4_5g04930.t1

Sequence Viewer

Length: 453 bp
ATGGGAATTGCCCTTCTCTCAGTTCAAGCACCTCATTACACCCCACTCCCTCAATTCCATTATACCAACACTACCAAGTCATGGAGGACCTTCTCTCGCCCCTACCCATTAGAATCCAAGTCCACCATCCTTCTCTGCTCAACCTCCTCATCCTCAGTTGTAGAAGACACTACTCTTCCACCTGATGATTCACTTGCAGCCAAATCTGAATCATCCATCAAAGAGCCTCCCTTCAGTGCTTGCAAGTCCTGCGGAAGAGAAGAAATGGAGAAGGGGTGCAATGGTGAAGGAAGTATTCAAGGTGGAATTGCAACATTTCCAGGATTTGGTTGGTGGCCGATAAAGGCTTACAGGCCATGTCCTGGATTTTTGGAATCAGGCGGCCGGTATCGGCGACAAGGACAAAGCCTGGATGAAGTTGCCTTTGGAAGAGGGGGGAGAGGAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.32

Weight (kDa)

7.62

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42070
fragaria_vesca FvH4_5g04930
prunus_persica Prupe.5G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194141
rosa_laevigata RLG00000004214
rosa_roxburghii Rroxscaffold_3G00261520
rosa_rugosa Rorug07G0014100
rosa_samantha Rh7AG141200 Rh7BG141900 Rh7CG145300 Rh7DG142700
rosa_wichuraiana Rw7G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 81, 326, 362
AciI CCGC 2 cut(s) 252, 381
AcoI YGGCCR 2 cut(s) 335, 382
AcuI CTGAAG 1 cut(s) 217
AfiI CCNNNNNNNGG 3 cut(s) 81, 326, 362
AgsI TTSAA 2 cut(s) 26, 299
AjnI CCWGG 3 cut(s) 319, 361, 408
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AoxI GGCC 3 cut(s) 335, 353, 382
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 209
BccI CCATC 2 cut(s) 134, 224
BciT130I CCWGG 3 cut(s) 321, 363, 410
BfaI CTAG 1 cut(s) 451
BisI GCNGC 2 cut(s) 198, 382
BlsI GCNGC 2 cut(s) 199, 383
Bme1390I CCNGG 3 cut(s) 321, 363, 410
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmrFI CCNGG 3 cut(s) 321, 363, 410
BpiI GAAGAC 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 326, 362
Bse118I RCCGGY 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 3 cut(s) 321, 363, 410
BseGI GGATG 4 cut(s) 126, 149, 212, 418
BseLI CCNNNNNNNGG 3 cut(s) 81, 326, 362
BseMI GCAATG 1 cut(s) 286
BseMII CTCAG 2 cut(s) 33, 168
BseRI GAGGAG 1 cut(s) 136
BseX3I CGGCCG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 337, 355, 384
BsiEI CGRYCG 1 cut(s) 385
BsiSI CCGG 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 81, 326, 362
BsnI GGCC 3 cut(s) 337, 355, 384
BspACI CCGC 2 cut(s) 252, 381
BspANI GGCC 3 cut(s) 337, 355, 384
BspCNI CTCAG 2 cut(s) 32, 167
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 321, 363, 410
Bst6I CTCTTC 3 cut(s) 180, 250, 424
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 19, 154
BstF5I GGATG 4 cut(s) 126, 149, 212, 418
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNI CCWGG 3 cut(s) 321, 363, 410
BstSCI CCNGG 3 cut(s) 319, 361, 408
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 171
BstZI CGGCCG 1 cut(s) 382
BsuRI GGCC 3 cut(s) 337, 355, 384
BtsCI GGATG 4 cut(s) 126, 149, 212, 418
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 87
CviAII CATG 2 cut(s) 81, 357
CviJI RGCY 7 cut(s) 200, 226, 337, 347, 355, 384, 408
CviKI_1 RGCY 7 cut(s) 200, 226, 337, 347, 355, 384, 408
DdeI CTNAG 2 cut(s) 19, 154
EaeI YGGCCR 2 cut(s) 335, 382
EagI CGGCCG 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 180, 250, 424
EarI CTCTTC 3 cut(s) 180, 250, 424
EclXI CGGCCG 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 87
Eco52I CGGCCG 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 3 cut(s) 319, 361, 408
FaeI CATG 2 cut(s) 84, 360
FaiI YATR 3 cut(s) 63, 82, 358
FatI CATG 2 cut(s) 80, 356
Fnu4HI GCNGC 2 cut(s) 198, 382
FokI GGATG 4 cut(s) 113, 136, 199, 425
Fsp4HI GCNGC 2 cut(s) 198, 382
FspBI CTAG 1 cut(s) 451
GluI GCNGC 2 cut(s) 198, 382
HaeIII GGCC 3 cut(s) 337, 355, 384
HapII CCGG 1 cut(s) 385
Hin1II CATG 2 cut(s) 84, 360
HinfI GANTC 4 cut(s) 113, 188, 209, 374
HpaII CCGG 1 cut(s) 385
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 23, 100, 140, 241, 265, 281
HpyCH4V TGCA 4 cut(s) 197, 243, 279, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 19, 154
Hsp92II CATG 2 cut(s) 84, 360
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 1 cut(s) 451
MboII GAAGA 5 cut(s) 167, 176, 267, 272, 441
MluCI AATT 3 cut(s) 6, 53, 306
MnlI CCTC 9 cut(s) 42, 60, 78, 154, 157, 163, 237, 425, 434
MspI CCGG 1 cut(s) 385
MspR9I CCNGG 3 cut(s) 321, 363, 410
MvaI CCWGG 3 cut(s) 321, 363, 410
MwoI GCNNNNNNNGC 1 cut(s) 249
NlaIII CATG 2 cut(s) 84, 360
PfeI GAWTC 4 cut(s) 113, 188, 209, 374
PflMI CCANNNNNTGG 3 cut(s) 81, 326, 362
PfoI TCCNGGA 2 cut(s) 319, 361
PkrI GCNGC 2 cut(s) 199, 383
PpuMI RGGWCCY 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 3 cut(s) 319, 361, 408
PspGI CCWGG 3 cut(s) 319, 361, 408
PspPI GGNCC 1 cut(s) 87
PspPPI RGGWCCY 1 cut(s) 87
SatI GCNGC 2 cut(s) 198, 382
Sau96I GGNCC 1 cut(s) 87
ScrFI CCNGG 3 cut(s) 321, 363, 410
SetI ASST 5 cut(s) 34, 92, 146, 184, 304
SinI GGWCC 1 cut(s) 87
Sse9I AATT 3 cut(s) 6, 53, 306
SsiI CCGC 2 cut(s) 252, 381
SspMI CTAG 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 319, 361, 408
TasI AATT 3 cut(s) 6, 53, 306
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 4 cut(s) 113, 188, 209, 374
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 3 cut(s) 81, 326, 362
VpaK11BI GGWCC 1 cut(s) 87
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XspI CTAG 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.