Rw7G012080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017565
Physical Location & Seq
Reverse (-)
11432335 .. 11433872
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012080.1

Sequence Viewer

Length: 432 bp
ATGGGAATAGCCCTTCTCTCAGTCCAAGCACCTCATCCCATCCCACTCTCTCAATTCCATTACACCAACACTAGCAAGTCATGGAGGAGCTTCTCTCAGACCTACCCATTAGAATCCAAGTCTACCATCCTTCTCTGCTCAACCTCTTCAGCTTCAGTTGCAGAAGACACTGCTTCTCCTTCACCTGATGATTCACTTGCTGCCAATCAGAATCCCCCATCAAAGAGCTTCCCCTCAGAAGAAGTGGAGAAGGGATGCAATGGTGAAGGAAGGATTCAAGGTGGAATTGCAACATTTCCAGGATTTGGTTGGTGGCCCATAAAGGCTTACAGGCCATGCCCTGGATTTTTGGAATCAGGCGGCCGGTATAAGCGTCAAGGACAAAGCCTGGATGAGGTTGCCTTTGGAAGAGGTGGGAAAGGAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.33

Weight (kDa)

6.72

Isoelectric Point (pI)

46.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42070
fragaria_vesca FvH4_5g04930
prunus_persica Prupe.5G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194141
rosa_laevigata RLG00000004214
rosa_roxburghii Rroxscaffold_3G00261520
rosa_rugosa Rorug07G0014100
rosa_samantha Rh7AG141200 Rh7BG141900 Rh7CG145300 Rh7DG142700
rosa_wichuraiana Rw7G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 305, 341
AccI GTMKAC 1 cut(s) 122
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 132, 138
AfiI CCNNNNNNNGG 3 cut(s) 305, 341, 394
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 3 cut(s) 298, 340, 387
AluBI AGCT 3 cut(s) 90, 152, 228
AluI AGCT 3 cut(s) 90, 152, 228
AoxI GGCC 3 cut(s) 314, 332, 361
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 2 cut(s) 174, 275
BbsI GAAGAC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 47, 134, 226
BciT130I CCWGG 3 cut(s) 300, 342, 389
BfaI CTAG 2 cut(s) 72, 430
BisI GCNGC 2 cut(s) 201, 361
BlsI GCNGC 2 cut(s) 202, 362
Bme1390I CCNGG 3 cut(s) 300, 342, 389
BmgT120I GGNCC 1 cut(s) 315
BmrFI CCNGG 3 cut(s) 300, 342, 389
BmsI GCATC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BsaJI CCNNGG 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 341, 394
Bse118I RCCGGY 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 3 cut(s) 300, 342, 389
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 5 cut(s) 34, 39, 126, 260, 397
BseLI CCNNNNNNNGG 3 cut(s) 305, 341, 394
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 3 cut(s) 33, 110, 249
BseRI GAGGAG 1 cut(s) 100
BseX3I CGGCCG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 316, 334, 363
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 305, 341, 394
BsnI GGCC 3 cut(s) 316, 334, 363
BspACI CCGC 1 cut(s) 360
BspANI GGCC 3 cut(s) 316, 334, 363
BspCNI CTCAG 3 cut(s) 32, 109, 248
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 340
Bst2UI CCWGG 3 cut(s) 300, 342, 389
Bst6I CTCTTC 2 cut(s) 151, 403
BstDEI CTNAG 3 cut(s) 19, 96, 235
BstENI CCTNNNNNAGG 1 cut(s) 392
BstF5I GGATG 5 cut(s) 34, 39, 126, 260, 397
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 3 cut(s) 300, 342, 389
BstSCI CCNGG 3 cut(s) 298, 340, 387
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 171
BstZI CGGCCG 1 cut(s) 361
BsuRI GGCC 3 cut(s) 316, 334, 363
BtsCI GGATG 5 cut(s) 34, 39, 126, 260, 397
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 362
CviAII CATG 2 cut(s) 81, 336
CviJI RGCY 9 cut(s) 11, 90, 152, 228, 316, 326, 334, 363, 387
CviKI_1 RGCY 9 cut(s) 11, 90, 152, 228, 316, 326, 334, 363, 387
DdeI CTNAG 3 cut(s) 19, 96, 235
EaeI YGGCCR 1 cut(s) 361
EagI CGGCCG 1 cut(s) 361
Eam1104I CTCTTC 2 cut(s) 151, 403
EarI CTCTTC 2 cut(s) 151, 403
EclXI CGGCCG 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 132, 138
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 298, 340, 387
FaeI CATG 2 cut(s) 84, 339
FaiI YATR 4 cut(s) 82, 320, 337, 369
FatI CATG 2 cut(s) 80, 335
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 201, 361
FokI GGATG 5 cut(s) 21, 26, 113, 267, 404
Fsp4HI GCNGC 2 cut(s) 201, 361
FspBI CTAG 2 cut(s) 72, 430
GluI GCNGC 2 cut(s) 201, 361
HaeIII GGCC 3 cut(s) 316, 334, 363
HapII CCGG 1 cut(s) 364
HgaI GACGC 1 cut(s) 362
Hin1II CATG 2 cut(s) 84, 339
HinfI GANTC 5 cut(s) 113, 191, 211, 274, 353
HpaII CCGG 1 cut(s) 364
HphI GGTGA 2 cut(s) 174, 275
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 99, 210, 238
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 23, 140, 189, 244, 260, 264
HpyCH4V TGCA 3 cut(s) 161, 258, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 19, 96, 235
Hsp92II CATG 2 cut(s) 84, 339
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 245
MaeI CTAG 2 cut(s) 72, 430
MboII GAAGA 4 cut(s) 138, 176, 251, 420
MluCI AATT 2 cut(s) 53, 285
MnlI CCTC 6 cut(s) 42, 78, 154, 244, 388, 404
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 3 cut(s) 300, 342, 389
MvaI CCWGG 3 cut(s) 300, 342, 389
MwoI GCNNNNNNNGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 84, 339
PfeI GAWTC 5 cut(s) 113, 191, 211, 274, 353
PflMI CCANNNNNTGG 2 cut(s) 305, 341
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 2 cut(s) 202, 362
Psp6I CCWGG 3 cut(s) 298, 340, 387
PspGI CCWGG 3 cut(s) 298, 340, 387
PspPI GGNCC 1 cut(s) 315
SatI GCNGC 2 cut(s) 201, 361
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 3 cut(s) 300, 342, 389
SfaNI GCATC 1 cut(s) 245
Sse9I AATT 2 cut(s) 53, 285
SsiI CCGC 1 cut(s) 360
SspMI CTAG 2 cut(s) 72, 430
StyD4I CCNGG 3 cut(s) 298, 340, 387
TasI AATT 2 cut(s) 53, 285
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 5 cut(s) 113, 191, 211, 274, 353
TscAI CASTG 1 cut(s) 175
TseI GCWGC 1 cut(s) 200
TspRI CASTG 1 cut(s) 175
Van91I CCANNNNNTGG 2 cut(s) 305, 341
XagI CCTNNNNNAGG 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 2 cut(s) 72, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.