Rh7BG141900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
10495579 .. 10497851
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG141900.1

Sequence Viewer

Length: 555 bp
ATGGTTGTGCCTGAGACTCTGAGCCTCACAATTGAAACAAAGCTAATCCATTCCTCTACTCATCTCATTGTAGTGAAACAGAATCACATACGGGAGAGAATGGGAACAGCCCTTCTCTCAGTCCAAGCACCTCATCACATCCCTCTCTCTCAATTCCATTACACCAACACTACCAAGTCATGGAGGAGCTTCTCTCAGACCTACCCATTAGAACCCAAGTCTACCATCCTTCTCTGCTCAACCTCTTCAGCTTCAGTTGTAGAAGACACTGCTTCTCCTCCACCTGATGATTCACTTGCTGCCAAATCAGAATCCCCCATCAAAGAGCTTCCCCTCAGTGCTTGCAAGTCCTGTGGAAGAGAAGAAGTGGAGAAGGGATGCAATGGTGAAGGAAGGATTCAAGGTGGAATTGCAACATTTCCAGGATTTGGTTGGTGGCCCATAAAGGCTTACAGGCCATGCCCTGGATTTTTGGAATCAGGCGGCCGGTATAAGCGACAAGGACAAAGCCTGGATGAGGTTGCCTTTGGAAGAGGTGGGAAAGGAGAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.05

Weight (kDa)

8.28

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017565)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42070
fragaria_vesca FvH4_5g04930
prunus_persica Prupe.5G122800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0194141
rosa_laevigata RLG00000004214
rosa_roxburghii Rroxscaffold_3G00261520
rosa_rugosa Rorug07G0014100
rosa_samantha Rh7AG141200 Rh7BG141900 Rh7CG145300 Rh7DG142700
rosa_wichuraiana Rw7G012080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 180, 428, 464
AccI GTMKAC 1 cut(s) 221
AciI CCGC 1 cut(s) 483
AcoI YGGCCR 1 cut(s) 484
AcuI CTGAAG 2 cut(s) 231, 237
AfiI CCNNNNNNNGG 4 cut(s) 180, 428, 464, 517
AgsI TTSAA 2 cut(s) 35, 401
AjnI CCWGG 3 cut(s) 421, 463, 510
AluBI AGCT 4 cut(s) 43, 189, 251, 328
AluI AGCT 4 cut(s) 43, 189, 251, 328
Alw26I GTCTC 1 cut(s) 8
AoxI GGCC 3 cut(s) 437, 455, 484
ApeKI GCWGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 438
AsuHPI GGTGA 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 286
BccI CCATC 2 cut(s) 233, 326
BciT130I CCWGG 3 cut(s) 423, 465, 512
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 1 cut(s) 553
BisI GCNGC 2 cut(s) 300, 484
BlsI GCNGC 2 cut(s) 301, 485
Bme1390I CCNGG 3 cut(s) 423, 465, 512
BmgT120I GGNCC 1 cut(s) 438
BmrFI CCNGG 3 cut(s) 423, 465, 512
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 178, 210
BsaJI CCNNGG 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 428, 464, 517
Bse118I RCCGGY 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 3 cut(s) 423, 465, 512
BseDI CCNNGG 1 cut(s) 463
BseGI GGATG 4 cut(s) 138, 225, 383, 520
BseLI CCNNNNNNNGG 4 cut(s) 180, 428, 464, 517
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 4 cut(s) 11, 132, 209, 349
BseRI GAGGAG 2 cut(s) 199, 267
BseX3I CGGCCG 1 cut(s) 484
BseXI GCAGC 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 3 cut(s) 439, 457, 486
BsiEI CGRYCG 1 cut(s) 487
BsiSI CCGG 1 cut(s) 487
BslI CCNNNNNNNGG 4 cut(s) 180, 428, 464, 517
BsmAI GTCTC 1 cut(s) 8
BsnI GGCC 3 cut(s) 439, 457, 486
BspACI CCGC 1 cut(s) 483
BspANI GGCC 3 cut(s) 439, 457, 486
BspCNI CTCAG 5 cut(s) 4, 12, 131, 208, 348
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 463
Bst2UI CCWGG 3 cut(s) 423, 465, 512
Bst6I CTCTTC 3 cut(s) 250, 352, 526
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 5 cut(s) 12, 20, 118, 195, 335
BstENI CCTNNNNNAGG 1 cut(s) 515
BstF5I GGATG 4 cut(s) 138, 225, 383, 520
BstMAI GTCTC 1 cut(s) 8
BstMCI CGRYCG 1 cut(s) 487
BstNI CCWGG 3 cut(s) 423, 465, 512
BstSCI CCNGG 3 cut(s) 421, 463, 510
BstV1I GCAGC 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 270
BstZI CGGCCG 1 cut(s) 484
BsuRI GGCC 3 cut(s) 439, 457, 486
BtsCI GGATG 4 cut(s) 138, 225, 383, 520
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 267, 343
Cac8I GCNNGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 438
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 2 cut(s) 180, 459
DdeI CTNAG 5 cut(s) 12, 20, 118, 195, 335
EaeI YGGCCR 1 cut(s) 484
EagI CGGCCG 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 250, 352, 526
EarI CTCTTC 3 cut(s) 250, 352, 526
EclXI CGGCCG 1 cut(s) 484
Eco52I CGGCCG 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 231, 237
EcoNI CCTNNNNNAGG 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 421, 463, 510
FaeI CATG 2 cut(s) 183, 462
FaiI YATR 5 cut(s) 89, 181, 443, 460, 492
FatI CATG 2 cut(s) 179, 458
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 300, 484
FokI GGATG 4 cut(s) 125, 212, 390, 527
Fsp4HI GCNGC 2 cut(s) 300, 484
FspBI CTAG 1 cut(s) 553
GluI GCNGC 2 cut(s) 300, 484
HaeIII GGCC 3 cut(s) 439, 457, 486
HapII CCGG 1 cut(s) 487
Hin1II CATG 2 cut(s) 183, 462
HinfI GANTC 6 cut(s) 16, 82, 290, 311, 397, 476
HpaII CCGG 1 cut(s) 487
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 3 cut(s) 21, 198, 310
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 5 cut(s) 122, 239, 367, 383, 387
HpyCH4V TGCA 3 cut(s) 345, 381, 413
HpyF3I CTNAG 5 cut(s) 12, 20, 118, 195, 335
Hsp92II CATG 2 cut(s) 183, 462
LmnI GCTCC 1 cut(s) 186
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 1 cut(s) 368
MaeI CTAG 1 cut(s) 553
MboII GAAGA 5 cut(s) 237, 275, 369, 374, 543
MfeI CAATTG 1 cut(s) 30
MluCI AATT 3 cut(s) 30, 152, 408
MlyI GAGTC 1 cut(s) 10
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 487
MspR9I CCNGG 3 cut(s) 423, 465, 512
MunI CAATTG 1 cut(s) 30
MvaI CCWGG 3 cut(s) 423, 465, 512
NlaIII CATG 2 cut(s) 183, 462
PfeI GAWTC 5 cut(s) 82, 290, 311, 397, 476
PflMI CCANNNNNTGG 3 cut(s) 180, 428, 464
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 2 cut(s) 301, 485
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
Psp6I CCWGG 3 cut(s) 421, 463, 510
PspGI CCWGG 3 cut(s) 421, 463, 510
PspPI GGNCC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 71
SatI GCNGC 2 cut(s) 300, 484
Sau96I GGNCC 1 cut(s) 438
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 3 cut(s) 423, 465, 512
SfaNI GCATC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 3 cut(s) 30, 152, 408
SsiI CCGC 1 cut(s) 483
SspMI CTAG 1 cut(s) 553
StyD4I CCNGG 3 cut(s) 421, 463, 510
TasI AATT 3 cut(s) 30, 152, 408
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 5 cut(s) 82, 290, 311, 397, 476
TscAI CASTG 2 cut(s) 274, 343
TseI GCWGC 1 cut(s) 299
TspRI CASTG 2 cut(s) 274, 343
Van91I CCANNNNNTGG 3 cut(s) 180, 428, 464
XagI CCTNNNNNAGG 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 221
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.