Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42450 AT5G42450 |
| fragaria_vesca | FvH4_6g14440 FvH4_6g14560 |
| malus_domestica | MD12G1136500.v1.1 |
| prunus_persica | Prupe.6G248900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0467611 |
| rosa_laevigata | RLG00000024485 |
| rosa_multiflora | Rmu_sc0011632.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00413550 |
| rosa_rugosa | Rorug03G0088500 |
| rosa_samantha | Rh3AG136800 Rh3BG158600 Rh3DG159100 |
| rosa_wichuraiana | Rw3G012960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 918 |
| Acc65I | GGTACC | 1 cut(s) | 504 |
| AccB1I | GGYRCC | 1 cut(s) | 504 |
| AciI | CCGC | 5 cut(s) | 188, 398, 613, 1031, 1268 |
| AclWI | GGATC | 4 cut(s) | 129, 1082, 1286, 1299 |
| AcoI | YGGCCR | 1 cut(s) | 1147 |
| AcsI | RAATTY | 4 cut(s) | 85, 156, 521, 1440 |
| AcyI | GRCGYC | 1 cut(s) | 1271 |
| AfaI | GTAC | 3 cut(s) | 427, 506, 1052 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 100, 246, 1202 |
| AflII | CTTAAG | 2 cut(s) | 509, 1478 |
| AflIII | ACRYGT | 2 cut(s) | 220, 1053 |
| AgsI | TTSAA | 9 cut(s) | 244, 406, 527, 781, 856, 1156, 1326, 1427, 1526 |
| AjnI | CCWGG | 1 cut(s) | 1195 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 463, 495, 1192, 1224 |
| AluBI | AGCT | 7 cut(s) | 343, 533, 719, 862, 941, 1070, 1171 |
| AluI | AGCT | 7 cut(s) | 343, 533, 719, 862, 941, 1070, 1171 |
| Alw21I | GWGCWC | 1 cut(s) | 1113 |
| Alw26I | GTCTC | 4 cut(s) | 459, 976, 1382, 1428 |
| AlwI | GGATC | 4 cut(s) | 129, 1082, 1286, 1299 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| AoxI | GGCC | 3 cut(s) | 269, 1033, 1147 |
| ApeKI | GCWGC | 1 cut(s) | 340 |
| ApoI | RAATTY | 4 cut(s) | 85, 156, 521, 1440 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 776 |
| Asp718I | GGTACC | 1 cut(s) | 504 |
| AspLEI | GCGC | 2 cut(s) | 755, 919 |
| AspS9I | GGNCC | 2 cut(s) | 1033, 1143 |
| AsuHPI | GGTGA | 3 cut(s) | 72, 202, 676 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| AvaII | GGWCC | 1 cut(s) | 1143 |
| BamHI | GGATCC | 1 cut(s) | 1291 |
| BanI | GGYRCC | 1 cut(s) | 504 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 556, 588 |
| BbsI | GAAGAC | 2 cut(s) | 297, 836 |
| Bbv12I | GWGCWC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 1 cut(s) | 352 |
| BccI | CCATC | 1 cut(s) | 358 |
| BceAI | ACGGC | 1 cut(s) | 1134 |
| BciT130I | CCWGG | 1 cut(s) | 1197 |
| BclI | TGATCA | 1 cut(s) | 804 |
| BcoDI | GTCTC | 4 cut(s) | 459, 976, 1382, 1428 |
| BfaI | CTAG | 4 cut(s) | 462, 1100, 1140, 1296 |
| BfmI | CTRYAG | 3 cut(s) | 183, 942, 1492 |
| BfrI | CTTAAG | 2 cut(s) | 509, 1478 |
| BisI | GCNGC | 2 cut(s) | 341, 1269 |
| BlsI | GCNGC | 2 cut(s) | 342, 1270 |
| Bme1390I | CCNGG | 1 cut(s) | 1197 |
| Bme18I | GGWCC | 1 cut(s) | 1143 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 2 cut(s) | 1033, 1143 |
| BmiI | GGNNCC | 2 cut(s) | 506, 1293 |
| BmrFI | CCNGG | 1 cut(s) | 1197 |
| BmsI | GCATC | 2 cut(s) | 427, 1220 |
| BoxI | GACNNNNGTC | 1 cut(s) | 373 |
| BpiI | GAAGAC | 2 cut(s) | 297, 836 |
| BpmI | CTGGAG | 1 cut(s) | 1127 |
| BsaAI | YACGTR | 2 cut(s) | 131, 1315 |
| BsaBI | GATNNNNATC | 1 cut(s) | 120 |
| BsaHI | GRCGYC | 1 cut(s) | 1271 |
| BsaI | GGTCTC | 3 cut(s) | 459, 976, 1428 |
| BsaJI | CCNNGG | 2 cut(s) | 1003, 1195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 100, 246, 1202 |
| Bse1I | ACTGG | 3 cut(s) | 1110, 1355, 1396 |
| Bse3DI | GCAATG | 2 cut(s) | 558, 1217 |
| Bse8I | GATNNNNATC | 1 cut(s) | 120 |
| BseBI | CCWGG | 1 cut(s) | 1197 |
| BseDI | CCNNGG | 2 cut(s) | 1003, 1195 |
| BseGI | GGATG | 4 cut(s) | 1235, 1418, 1489, 1503 |
| BseJI | GATNNNNATC | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 100, 246, 1202 |
| BseMI | GCAATG | 2 cut(s) | 558, 1217 |
| BseMII | CTCAG | 4 cut(s) | 153, 413, 549, 971 |
| BseNI | ACTGG | 3 cut(s) | 1110, 1355, 1396 |
| BseRI | GAGGAG | 1 cut(s) | 945 |
| BseX3I | CGGCCG | 1 cut(s) | 1147 |
| BseXI | GCAGC | 1 cut(s) | 352 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1150 |
| BshFI | GGCC | 3 cut(s) | 271, 1035, 1149 |
| BshNI | GGYRCC | 1 cut(s) | 504 |
| BsiEI | CGRYCG | 1 cut(s) | 1150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1113 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BsiSI | CCGG | 1 cut(s) | 1146 |
| BslFI | GGGAC | 1 cut(s) | 381 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 100, 246, 1202 |
| BsmAI | GTCTC | 4 cut(s) | 459, 976, 1382, 1428 |
| BsmFI | GGGAC | 1 cut(s) | 381 |
| BsmI | GAATGC | 2 cut(s) | 586, 1462 |
| BsnI | GGCC | 3 cut(s) | 271, 1035, 1149 |
| Bso31I | GGTCTC | 3 cut(s) | 459, 976, 1428 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1113 |
| Bsp143I | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| BspACI | CCGC | 5 cut(s) | 188, 398, 613, 1031, 1268 |
| BspANI | GGCC | 3 cut(s) | 271, 1035, 1149 |
| BspCNI | CTCAG | 4 cut(s) | 154, 414, 550, 972 |
| BspLI | GGNNCC | 2 cut(s) | 506, 1293 |
| BspPI | GGATC | 4 cut(s) | 129, 1082, 1286, 1299 |
| BspQI | GCTCTTC | 1 cut(s) | 1161 |
| BspT107I | GGYRCC | 1 cut(s) | 504 |
| BspTI | CTTAAG | 2 cut(s) | 509, 1478 |
| BspTNI | GGTCTC | 3 cut(s) | 459, 976, 1428 |
| BsrDI | GCAATG | 2 cut(s) | 558, 1217 |
| BsrI | ACTGG | 3 cut(s) | 1110, 1355, 1396 |
| BssECI | CCNNGG | 2 cut(s) | 1003, 1195 |
| BssMI | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| BssNI | GRCGYC | 1 cut(s) | 1271 |
| BssT1I | CCWWGG | 1 cut(s) | 1003 |
| Bst2UI | CCWGG | 1 cut(s) | 1197 |
| Bst4CI | ACNGT | 2 cut(s) | 295, 410 |
| Bst6I | CTCTTC | 4 cut(s) | 58, 615, 922, 1161 |
| BstACI | GRCGYC | 1 cut(s) | 1271 |
| BstAFI | CTTAAG | 2 cut(s) | 509, 1478 |
| BstBAI | YACGTR | 2 cut(s) | 131, 1315 |
| BstC8I | GCNNGC | 2 cut(s) | 751, 1033 |
| BstDEI | CTNAG | 4 cut(s) | 162, 422, 558, 980 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 244 |
| BstF5I | GGATG | 4 cut(s) | 1235, 1418, 1489, 1503 |
| BstHHI | GCGC | 2 cut(s) | 755, 919 |
| BstKTI | GATC | 4 cut(s) | 124, 807, 1090, 1294 |
| BstMAI | GTCTC | 4 cut(s) | 459, 976, 1382, 1428 |
| BstMBI | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| BstMCI | CGRYCG | 1 cut(s) | 1150 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 236, 701, 1265, 1337 |
| BstNI | CCWGG | 1 cut(s) | 1197 |
| BstNSI | RCATGY | 2 cut(s) | 224, 1057 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 373 |
| BstSCI | CCNGG | 1 cut(s) | 1195 |
| BstSFI | CTRYAG | 3 cut(s) | 183, 942, 1492 |
| BstSNI | TACGTA | 2 cut(s) | 131, 1315 |
| BstV1I | GCAGC | 1 cut(s) | 352 |
| BstV2I | GAAGAC | 2 cut(s) | 297, 836 |
| BstX2I | RGATCY | 2 cut(s) | 121, 1291 |
| BstYI | RGATCY | 2 cut(s) | 121, 1291 |
| BstZI | CGGCCG | 1 cut(s) | 1147 |
| BsuRI | GGCC | 3 cut(s) | 271, 1035, 1149 |
| BtsCI | GGATG | 4 cut(s) | 1235, 1418, 1489, 1503 |
| Cac8I | GCNNGC | 2 cut(s) | 751, 1033 |
| CfoI | GCGC | 2 cut(s) | 755, 919 |
| Cfr13I | GGNCC | 2 cut(s) | 1033, 1143 |
| CseI | GACGC | 3 cut(s) | 363, 1241, 1260 |
| Csp6I | GTAC | 3 cut(s) | 426, 505, 1051 |
| CviAII | CATG | 7 cut(s) | 221, 518, 725, 832, 949, 1028, 1054 |
| CviQI | GTAC | 3 cut(s) | 426, 505, 1051 |
| DdeI | CTNAG | 4 cut(s) | 162, 422, 558, 980 |
| DpnI | GATC | 4 cut(s) | 123, 806, 1089, 1293 |
| DpnII | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| DraI | TTTAAA | 1 cut(s) | 1398 |
| EaeI | YGGCCR | 1 cut(s) | 1147 |
| EagI | CGGCCG | 1 cut(s) | 1147 |
| Eam1104I | CTCTTC | 4 cut(s) | 58, 615, 922, 1161 |
| EarI | CTCTTC | 4 cut(s) | 58, 615, 922, 1161 |
| EciI | GGCGGA | 1 cut(s) | 628 |
| EclXI | CGGCCG | 1 cut(s) | 1147 |
| Eco105I | TACGTA | 2 cut(s) | 131, 1315 |
| Eco130I | CCWWGG | 1 cut(s) | 1003 |
| Eco31I | GGTCTC | 3 cut(s) | 459, 976, 1428 |
| Eco47I | GGWCC | 1 cut(s) | 1143 |
| Eco52I | CGGCCG | 1 cut(s) | 1147 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 244 |
| EcoRII | CCWGG | 1 cut(s) | 1195 |
| EcoT14I | CCWWGG | 1 cut(s) | 1003 |
| ErhI | CCWWGG | 1 cut(s) | 1003 |
| FaeI | CATG | 7 cut(s) | 224, 521, 728, 835, 952, 1031, 1057 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 519, 551, 828, 860 |
| FaqI | GGGAC | 1 cut(s) | 381 |
| FatI | CATG | 7 cut(s) | 220, 517, 724, 831, 948, 1027, 1053 |
| FauI | CCCGC | 1 cut(s) | 1024 |
| FauNDI | CATATG | 1 cut(s) | 9 |
| FbaI | TGATCA | 1 cut(s) | 804 |
| Fnu4HI | GCNGC | 2 cut(s) | 341, 1269 |
| FokI | GGATG | 4 cut(s) | 1242, 1425, 1496, 1510 |
| Fsp4HI | GCNGC | 2 cut(s) | 341, 1269 |
| FspAI | RTGCGCAY | 1 cut(s) | 918 |
| FspBI | CTAG | 4 cut(s) | 462, 1100, 1140, 1296 |
| FspI | TGCGCA | 1 cut(s) | 918 |
| GlaI | GCGC | 2 cut(s) | 754, 918 |
| GluI | GCNGC | 2 cut(s) | 341, 1269 |
| GsuI | CTGGAG | 1 cut(s) | 1127 |
| HaeIII | GGCC | 3 cut(s) | 271, 1035, 1149 |
| HapII | CCGG | 1 cut(s) | 1146 |
| HgaI | GACGC | 3 cut(s) | 363, 1241, 1260 |
| HhaI | GCGC | 2 cut(s) | 755, 919 |
| Hin1I | GRCGYC | 1 cut(s) | 1271 |
| Hin1II | CATG | 7 cut(s) | 224, 521, 728, 835, 952, 1031, 1057 |
| Hin6I | GCGC | 2 cut(s) | 753, 917 |
| HinP1I | GCGC | 2 cut(s) | 753, 917 |
| HincII | GTYRAC | 1 cut(s) | 432 |
| HindII | GTYRAC | 1 cut(s) | 432 |
| HinfI | GANTC | 5 cut(s) | 116, 677, 777, 1200, 1237 |
| HpaII | CCGG | 1 cut(s) | 1146 |
| HphI | GGTGA | 3 cut(s) | 72, 202, 676 |
| Hpy166II | GTNNAC | 2 cut(s) | 282, 432 |
| Hpy188I | TCNGA | 3 cut(s) | 121, 126, 804 |
| Hpy188III | TCNNGA | 4 cut(s) | 161, 318, 1190, 1523 |
| Hpy8I | GTNNAC | 2 cut(s) | 282, 432 |
| Hpy99I | CGWCG | 2 cut(s) | 155, 379 |
| HpyAV | CCTTC | 7 cut(s) | 202, 250, 650, 694, 1040, 1207, 1378 |
| HpyCH4III | ACNGT | 2 cut(s) | 295, 410 |
| HpyCH4IV | ACGT | 6 cut(s) | 130, 284, 428, 474, 993, 1314 |
| HpyCH4V | TGCA | 4 cut(s) | 7, 59, 137, 584 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 236, 701, 1265, 1337 |
| HpyF3I | CTNAG | 4 cut(s) | 162, 422, 558, 980 |
| HpySE526I | ACGT | 6 cut(s) | 130, 284, 428, 474, 993, 1314 |
| Hsp92I | GRCGYC | 1 cut(s) | 1271 |
| Hsp92II | CATG | 7 cut(s) | 224, 521, 728, 835, 952, 1031, 1057 |
| HspAI | GCGC | 2 cut(s) | 753, 917 |
| KpnI | GGTACC | 1 cut(s) | 508 |
| Ksp22I | TGATCA | 1 cut(s) | 804 |
| Kzo9I | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| LguI | GCTCTTC | 1 cut(s) | 1161 |
| LmnI | GCTCC | 1 cut(s) | 1108 |
| Lsp1109I | GCAGC | 1 cut(s) | 352 |
| LweI | GCATC | 2 cut(s) | 427, 1220 |
| MaeI | CTAG | 4 cut(s) | 462, 1100, 1140, 1296 |
| MaeII | ACGT | 6 cut(s) | 130, 284, 428, 474, 993, 1314 |
| MaeIII | GTNAC | 4 cut(s) | 70, 571, 994, 1022 |
| MalI | GATC | 4 cut(s) | 123, 806, 1089, 1293 |
| MboI | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| MflI | RGATCY | 2 cut(s) | 121, 1291 |
| MhlI | GDGCHC | 1 cut(s) | 1113 |
| MluCI | AATT | 8 cut(s) | 85, 156, 329, 490, 521, 1262, 1286, 1440 |
| MmeI | TCCRAC | 2 cut(s) | 1400, 1520 |
| MnlI | CCTC | 5 cut(s) | 587, 616, 923, 1197, 1368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 776 |
| MseI | TTAA | 9 cut(s) | 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479 |
| MslI | CAYNNNNRTG | 1 cut(s) | 351 |
| MspA1I | CMGCKG | 1 cut(s) | 188 |
| MspCI | CTTAAG | 2 cut(s) | 509, 1478 |
| MspI | CCGG | 1 cut(s) | 1146 |
| MspR9I | CCNGG | 1 cut(s) | 1197 |
| Mva1269I | GAATGC | 2 cut(s) | 586, 1462 |
| MvaI | CCWGG | 1 cut(s) | 1197 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 236, 701, 1265, 1337 |
| NdeI | CATATG | 1 cut(s) | 9 |
| NdeII | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| NlaIII | CATG | 7 cut(s) | 224, 521, 728, 835, 952, 1031, 1057 |
| NlaIV | GGNNCC | 2 cut(s) | 506, 1293 |
| NmuCI | GTSAC | 1 cut(s) | 994 |
| NsbI | TGCGCA | 1 cut(s) | 918 |
| NspI | RCATGY | 2 cut(s) | 224, 1057 |
| PciI | ACATGT | 2 cut(s) | 220, 1053 |
| PciSI | GCTCTTC | 1 cut(s) | 1161 |
| PctI | GAATGC | 2 cut(s) | 586, 1462 |
| PdmI | GAANNNNTTC | 1 cut(s) | 776 |
| PfeI | GAWTC | 5 cut(s) | 116, 677, 777, 1200, 1237 |
| PkrI | GCNGC | 2 cut(s) | 342, 1270 |
| Ppu21I | YACGTR | 2 cut(s) | 131, 1315 |
| PscI | ACATGT | 2 cut(s) | 220, 1053 |
| PshAI | GACNNNNGTC | 1 cut(s) | 373 |
| Psp6I | CCWGG | 1 cut(s) | 1195 |
| PspGI | CCWGG | 1 cut(s) | 1195 |
| PspN4I | GGNNCC | 2 cut(s) | 506, 1293 |
| PspPI | GGNCC | 2 cut(s) | 1033, 1143 |
| PsuI | RGATCY | 2 cut(s) | 121, 1291 |
| RsaI | GTAC | 3 cut(s) | 427, 506, 1052 |
| RsaNI | GTAC | 3 cut(s) | 426, 505, 1051 |
| RseI | CAYNNNNRTG | 1 cut(s) | 351 |
| SapI | GCTCTTC | 1 cut(s) | 1161 |
| SaqAI | TTAA | 9 cut(s) | 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479 |
| SatI | GCNGC | 2 cut(s) | 341, 1269 |
| Sau3AI | GATC | 4 cut(s) | 121, 804, 1087, 1291 |
| Sau96I | GGNCC | 2 cut(s) | 1033, 1143 |
| ScrFI | CCNGG | 1 cut(s) | 1197 |
| SduI | GDGCHC | 1 cut(s) | 1113 |
| SfaNI | GCATC | 2 cut(s) | 427, 1220 |
| SfcI | CTRYAG | 3 cut(s) | 183, 942, 1492 |
| SinI | GGWCC | 1 cut(s) | 1143 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 2 cut(s) | 509, 1478 |
| SmoI | CTYRAG | 2 cut(s) | 509, 1478 |
| SnaBI | TACGTA | 2 cut(s) | 131, 1315 |
| Sse9I | AATT | 8 cut(s) | 85, 156, 329, 490, 521, 1262, 1286, 1440 |
| SsiI | CCGC | 5 cut(s) | 188, 398, 613, 1031, 1268 |
| SspMI | CTAG | 4 cut(s) | 462, 1100, 1140, 1296 |
| StyD4I | CCNGG | 1 cut(s) | 1195 |
| StyI | CCWWGG | 1 cut(s) | 1003 |
| TaaI | ACNGT | 2 cut(s) | 295, 410 |
| TaiI | ACGT | 6 cut(s) | 133, 287, 431, 477, 996, 1317 |
| TaqI | TCGA | 4 cut(s) | 150, 317, 377, 864 |
| TasI | AATT | 8 cut(s) | 85, 156, 329, 490, 521, 1262, 1286, 1440 |
| TauI | GCSGC | 1 cut(s) | 1271 |
| TfiI | GAWTC | 5 cut(s) | 116, 677, 777, 1200, 1237 |
| Tru1I | TTAA | 9 cut(s) | 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479 |
| Tru9I | TTAA | 9 cut(s) | 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479 |
| TseFI | GTSAC | 1 cut(s) | 994 |
| TseI | GCWGC | 1 cut(s) | 340 |
| Tsp45I | GTSAC | 1 cut(s) | 994 |
| TspDTI | ATGAA | 6 cut(s) | 335, 534, 1296, 1397, 1500, 1548 |
| TspGWI | ACGGA | 3 cut(s) | 892, 939, 1387 |
| Vha464I | CTTAAG | 2 cut(s) | 509, 1478 |
| VpaK11BI | GGWCC | 1 cut(s) | 1143 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 244 |
| XapI | RAATTY | 4 cut(s) | 85, 156, 521, 1440 |
| XceI | RCATGY | 2 cut(s) | 224, 1057 |
| XmnI | GAANNNNTTC | 1 cut(s) | 776 |
| XspI | CTAG | 4 cut(s) | 462, 1100, 1140, 1296 |