AT5G42450

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
16977207 .. 16979073
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42450.2

Sequence Viewer

Length: 1554 bp
ATGTTGCATATGATTTTATCTCAAAGAGTAATCCTTTTACGAAAATATCACTCTTCTGCAAATGCCCTTGTTACCAAATCACCAAATTCTATCCCCGAGTTGGTTAAACATATTGATTCGGATCTGATACGTAATGCACATAAGGTGTTCGACGAAATTCCTGAGTTAGATGTCATTTCTGCTACAGCGGTGATTGGTCGCTTTGTGAAGGAAAGCAGACATGTGGAAGCAAGTCAAGCCTTCAAAAGGTTGTTGTGTTTAGGCATAAGGCCAAATGAGTTCACGTTTGGCACGGTCATTGGGTCTTCTACAACTTCGAGAGATGTCAAATTGGGTAAGCAGCTTCATTGTTATGCGTTAAAGATGGGACTTGCGTCGAATGTGTTTGTTGGTAGTGCGGTTTTGAACTGTTATGTGAAACTGAGTACGTTGACAGATGCTCGTAGATGTTTTGATGACACTAGAGACCCAAACGTAGTTTCTATTACCAATTTGATTAGTGGGTACCTTAAGAAACATGAATTTGAAGAAGCTCTTTCGTTGTTTAGAGCAATGCCTGAGAGAAGTGTTGTTACTTGGAATGCAGTTATTGGAGGGTTTAGCCAGACGGGGCGGAACGAAGAGGCTGTGAATACTTTTGTGGATATGTTAAGGGAAGGTGTGGTGATACCTAACGAATCAACCTTCCCTTGTGCTATAACAGCCATATCTAATATAGCTTCTCATGGTGCTGGTAAGAGTATTCACGCCTGCGCTATAAAGTTCTTGGGGAAGCGATTCAATGTCTTTGTTTGGAACTCTCTGATCAGTTTTTACTCAAAATGTGGGAACATGGAAGATAGTCTTCTGGCTTTCAACAAGCTCGAAGAAGAACAACGGAACATTGTATCTTGGAACTCTATGATATGGGGTTATGCGCACAACGGAAGAGGAGAAGAAGCTGTAGCCATGTTTGAGAAAATGGTTAAAGACACAAACCTGAGACCAAACAACGTGACAATCCTTGGAGTATTATTTGCGTGTAACCATGCGGGCCTAATACAAGAAGGGTACATGTATTTTAACAAAGCTGTGAATGATTATGATGATCCAAACCTACTAGAACTGGAGCACTATGCTTGTATGGTGGATATGCTTTCTAGGTCCGGCCGTTTCAAAGAAGCAGAAGAGCTTATTAAAAGTATGCCTCTTGACCCAGGAATCGGGTTTTGGAAGGCATTGCTTGGGGGATGCCAGATTCACTCAAACAAGCGTCTGGCTAAATTAGCGGCGTCAAAAATCTTGGAATTGGATCCTAGAGATGTTTCATCATACGTAATGCTTTCAAATGCTTATTCTGCTATGGAAAACTGGCAGAATGTGTCGCTGATACGGAGGAAAATGAAGGAGACTGGTTTAAAGCGTTTTACGGGATGTAGTTGGATTGAAGTTAGAGACCAAATTCGTGTCTTTGTGAATGCTGACAAGAACAACGAACTTAAGGATGAAGTCTATAGGATGTTGGCACTTGTTTCTCAACATCTTGAAGAAAATGAATGTTGGAAAGACTTGTGA

Protein Analysis

517

Amino Acids

58.3

Weight (kDa)

7.92

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 209 - 250 4.6e-10 PPR repeat family
PPR PF01535 212 - 239 8e-09 PPR repeat
E_motif PF20431 330 - 392 8.1e-20 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42450 AT5G42450
fragaria_vesca FvH4_6g14440 FvH4_6g14560
malus_domestica MD12G1136500.v1.1
prunus_persica Prupe.6G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0467611
rosa_laevigata RLG00000024485
rosa_multiflora Rmu_sc0011632.1_g000010
rosa_roxburghii Rroxscaffold_6G00413550
rosa_rugosa Rorug03G0088500
rosa_samantha Rh3AG136800 Rh3BG158600 Rh3DG159100
rosa_wichuraiana Rw3G012960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 918
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AciI CCGC 5 cut(s) 188, 398, 613, 1031, 1268
AclWI GGATC 4 cut(s) 129, 1082, 1286, 1299
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 4 cut(s) 85, 156, 521, 1440
AcyI GRCGYC 1 cut(s) 1271
AfaI GTAC 3 cut(s) 427, 506, 1052
AfiI CCNNNNNNNGG 3 cut(s) 100, 246, 1202
AflII CTTAAG 2 cut(s) 509, 1478
AflIII ACRYGT 2 cut(s) 220, 1053
AgsI TTSAA 9 cut(s) 244, 406, 527, 781, 856, 1156, 1326, 1427, 1526
AjnI CCWGG 1 cut(s) 1195
AjuI GAANNNNNNNTTGG 4 cut(s) 463, 495, 1192, 1224
AluBI AGCT 7 cut(s) 343, 533, 719, 862, 941, 1070, 1171
AluI AGCT 7 cut(s) 343, 533, 719, 862, 941, 1070, 1171
Alw21I GWGCWC 1 cut(s) 1113
Alw26I GTCTC 4 cut(s) 459, 976, 1382, 1428
AlwI GGATC 4 cut(s) 129, 1082, 1286, 1299
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 3 cut(s) 269, 1033, 1147
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 4 cut(s) 85, 156, 521, 1440
Asp700I GAANNNNTTC 1 cut(s) 776
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 2 cut(s) 755, 919
AspS9I GGNCC 2 cut(s) 1033, 1143
AsuHPI GGTGA 3 cut(s) 72, 202, 676
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 1143
BamHI GGATCC 1 cut(s) 1291
BanI GGYRCC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 556, 588
BbsI GAAGAC 2 cut(s) 297, 836
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 1 cut(s) 352
BccI CCATC 1 cut(s) 358
BceAI ACGGC 1 cut(s) 1134
BciT130I CCWGG 1 cut(s) 1197
BclI TGATCA 1 cut(s) 804
BcoDI GTCTC 4 cut(s) 459, 976, 1382, 1428
BfaI CTAG 4 cut(s) 462, 1100, 1140, 1296
BfmI CTRYAG 3 cut(s) 183, 942, 1492
BfrI CTTAAG 2 cut(s) 509, 1478
BisI GCNGC 2 cut(s) 341, 1269
BlsI GCNGC 2 cut(s) 342, 1270
Bme1390I CCNGG 1 cut(s) 1197
Bme18I GGWCC 1 cut(s) 1143
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 1033, 1143
BmiI GGNNCC 2 cut(s) 506, 1293
BmrFI CCNGG 1 cut(s) 1197
BmsI GCATC 2 cut(s) 427, 1220
BoxI GACNNNNGTC 1 cut(s) 373
BpiI GAAGAC 2 cut(s) 297, 836
BpmI CTGGAG 1 cut(s) 1127
BsaAI YACGTR 2 cut(s) 131, 1315
BsaBI GATNNNNATC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 1271
BsaI GGTCTC 3 cut(s) 459, 976, 1428
BsaJI CCNNGG 2 cut(s) 1003, 1195
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 246, 1202
Bse1I ACTGG 3 cut(s) 1110, 1355, 1396
Bse3DI GCAATG 2 cut(s) 558, 1217
Bse8I GATNNNNATC 1 cut(s) 120
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 2 cut(s) 1003, 1195
BseGI GGATG 4 cut(s) 1235, 1418, 1489, 1503
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 3 cut(s) 100, 246, 1202
BseMI GCAATG 2 cut(s) 558, 1217
BseMII CTCAG 4 cut(s) 153, 413, 549, 971
BseNI ACTGG 3 cut(s) 1110, 1355, 1396
BseRI GAGGAG 1 cut(s) 945
BseX3I CGGCCG 1 cut(s) 1147
BseXI GCAGC 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 1150
BshFI GGCC 3 cut(s) 271, 1035, 1149
BshNI GGYRCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 1150
BsiHKAI GWGCWC 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 1146
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 3 cut(s) 100, 246, 1202
BsmAI GTCTC 4 cut(s) 459, 976, 1382, 1428
BsmFI GGGAC 1 cut(s) 381
BsmI GAATGC 2 cut(s) 586, 1462
BsnI GGCC 3 cut(s) 271, 1035, 1149
Bso31I GGTCTC 3 cut(s) 459, 976, 1428
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp143I GATC 4 cut(s) 121, 804, 1087, 1291
BspACI CCGC 5 cut(s) 188, 398, 613, 1031, 1268
BspANI GGCC 3 cut(s) 271, 1035, 1149
BspCNI CTCAG 4 cut(s) 154, 414, 550, 972
BspLI GGNNCC 2 cut(s) 506, 1293
BspPI GGATC 4 cut(s) 129, 1082, 1286, 1299
BspQI GCTCTTC 1 cut(s) 1161
BspT107I GGYRCC 1 cut(s) 504
BspTI CTTAAG 2 cut(s) 509, 1478
BspTNI GGTCTC 3 cut(s) 459, 976, 1428
BsrDI GCAATG 2 cut(s) 558, 1217
BsrI ACTGG 3 cut(s) 1110, 1355, 1396
BssECI CCNNGG 2 cut(s) 1003, 1195
BssMI GATC 4 cut(s) 121, 804, 1087, 1291
BssNI GRCGYC 1 cut(s) 1271
BssT1I CCWWGG 1 cut(s) 1003
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 2 cut(s) 295, 410
Bst6I CTCTTC 4 cut(s) 58, 615, 922, 1161
BstACI GRCGYC 1 cut(s) 1271
BstAFI CTTAAG 2 cut(s) 509, 1478
BstBAI YACGTR 2 cut(s) 131, 1315
BstC8I GCNNGC 2 cut(s) 751, 1033
BstDEI CTNAG 4 cut(s) 162, 422, 558, 980
BstENI CCTNNNNNAGG 1 cut(s) 244
BstF5I GGATG 4 cut(s) 1235, 1418, 1489, 1503
BstHHI GCGC 2 cut(s) 755, 919
BstKTI GATC 4 cut(s) 124, 807, 1090, 1294
BstMAI GTCTC 4 cut(s) 459, 976, 1382, 1428
BstMBI GATC 4 cut(s) 121, 804, 1087, 1291
BstMCI CGRYCG 1 cut(s) 1150
BstMWI GCNNNNNNNGC 4 cut(s) 236, 701, 1265, 1337
BstNI CCWGG 1 cut(s) 1197
BstNSI RCATGY 2 cut(s) 224, 1057
BstPAI GACNNNNGTC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 1195
BstSFI CTRYAG 3 cut(s) 183, 942, 1492
BstSNI TACGTA 2 cut(s) 131, 1315
BstV1I GCAGC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 297, 836
BstX2I RGATCY 2 cut(s) 121, 1291
BstYI RGATCY 2 cut(s) 121, 1291
BstZI CGGCCG 1 cut(s) 1147
BsuRI GGCC 3 cut(s) 271, 1035, 1149
BtsCI GGATG 4 cut(s) 1235, 1418, 1489, 1503
Cac8I GCNNGC 2 cut(s) 751, 1033
CfoI GCGC 2 cut(s) 755, 919
Cfr13I GGNCC 2 cut(s) 1033, 1143
CseI GACGC 3 cut(s) 363, 1241, 1260
Csp6I GTAC 3 cut(s) 426, 505, 1051
CviAII CATG 7 cut(s) 221, 518, 725, 832, 949, 1028, 1054
CviQI GTAC 3 cut(s) 426, 505, 1051
DdeI CTNAG 4 cut(s) 162, 422, 558, 980
DpnI GATC 4 cut(s) 123, 806, 1089, 1293
DpnII GATC 4 cut(s) 121, 804, 1087, 1291
DraI TTTAAA 1 cut(s) 1398
EaeI YGGCCR 1 cut(s) 1147
EagI CGGCCG 1 cut(s) 1147
Eam1104I CTCTTC 4 cut(s) 58, 615, 922, 1161
EarI CTCTTC 4 cut(s) 58, 615, 922, 1161
EciI GGCGGA 1 cut(s) 628
EclXI CGGCCG 1 cut(s) 1147
Eco105I TACGTA 2 cut(s) 131, 1315
Eco130I CCWWGG 1 cut(s) 1003
Eco31I GGTCTC 3 cut(s) 459, 976, 1428
Eco47I GGWCC 1 cut(s) 1143
Eco52I CGGCCG 1 cut(s) 1147
Eco88I CYCGRG 1 cut(s) 95
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 1003
FaeI CATG 7 cut(s) 224, 521, 728, 835, 952, 1031, 1057
FalI AAGNNNNNCTT 4 cut(s) 519, 551, 828, 860
FaqI GGGAC 1 cut(s) 381
FatI CATG 7 cut(s) 220, 517, 724, 831, 948, 1027, 1053
FauI CCCGC 1 cut(s) 1024
FauNDI CATATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 804
Fnu4HI GCNGC 2 cut(s) 341, 1269
FokI GGATG 4 cut(s) 1242, 1425, 1496, 1510
Fsp4HI GCNGC 2 cut(s) 341, 1269
FspAI RTGCGCAY 1 cut(s) 918
FspBI CTAG 4 cut(s) 462, 1100, 1140, 1296
FspI TGCGCA 1 cut(s) 918
GlaI GCGC 2 cut(s) 754, 918
GluI GCNGC 2 cut(s) 341, 1269
GsuI CTGGAG 1 cut(s) 1127
HaeIII GGCC 3 cut(s) 271, 1035, 1149
HapII CCGG 1 cut(s) 1146
HgaI GACGC 3 cut(s) 363, 1241, 1260
HhaI GCGC 2 cut(s) 755, 919
Hin1I GRCGYC 1 cut(s) 1271
Hin1II CATG 7 cut(s) 224, 521, 728, 835, 952, 1031, 1057
Hin6I GCGC 2 cut(s) 753, 917
HinP1I GCGC 2 cut(s) 753, 917
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 5 cut(s) 116, 677, 777, 1200, 1237
HpaII CCGG 1 cut(s) 1146
HphI GGTGA 3 cut(s) 72, 202, 676
Hpy166II GTNNAC 2 cut(s) 282, 432
Hpy188I TCNGA 3 cut(s) 121, 126, 804
Hpy188III TCNNGA 4 cut(s) 161, 318, 1190, 1523
Hpy8I GTNNAC 2 cut(s) 282, 432
Hpy99I CGWCG 2 cut(s) 155, 379
HpyAV CCTTC 7 cut(s) 202, 250, 650, 694, 1040, 1207, 1378
HpyCH4III ACNGT 2 cut(s) 295, 410
HpyCH4IV ACGT 6 cut(s) 130, 284, 428, 474, 993, 1314
HpyCH4V TGCA 4 cut(s) 7, 59, 137, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 701, 1265, 1337
HpyF3I CTNAG 4 cut(s) 162, 422, 558, 980
HpySE526I ACGT 6 cut(s) 130, 284, 428, 474, 993, 1314
Hsp92I GRCGYC 1 cut(s) 1271
Hsp92II CATG 7 cut(s) 224, 521, 728, 835, 952, 1031, 1057
HspAI GCGC 2 cut(s) 753, 917
KpnI GGTACC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 804
Kzo9I GATC 4 cut(s) 121, 804, 1087, 1291
LguI GCTCTTC 1 cut(s) 1161
LmnI GCTCC 1 cut(s) 1108
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 2 cut(s) 427, 1220
MaeI CTAG 4 cut(s) 462, 1100, 1140, 1296
MaeII ACGT 6 cut(s) 130, 284, 428, 474, 993, 1314
MaeIII GTNAC 4 cut(s) 70, 571, 994, 1022
MalI GATC 4 cut(s) 123, 806, 1089, 1293
MboI GATC 4 cut(s) 121, 804, 1087, 1291
MflI RGATCY 2 cut(s) 121, 1291
MhlI GDGCHC 1 cut(s) 1113
MluCI AATT 8 cut(s) 85, 156, 329, 490, 521, 1262, 1286, 1440
MmeI TCCRAC 2 cut(s) 1400, 1520
MnlI CCTC 5 cut(s) 587, 616, 923, 1197, 1368
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 9 cut(s) 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 188
MspCI CTTAAG 2 cut(s) 509, 1478
MspI CCGG 1 cut(s) 1146
MspR9I CCNGG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 586, 1462
MvaI CCWGG 1 cut(s) 1197
MwoI GCNNNNNNNGC 4 cut(s) 236, 701, 1265, 1337
NdeI CATATG 1 cut(s) 9
NdeII GATC 4 cut(s) 121, 804, 1087, 1291
NlaIII CATG 7 cut(s) 224, 521, 728, 835, 952, 1031, 1057
NlaIV GGNNCC 2 cut(s) 506, 1293
NmuCI GTSAC 1 cut(s) 994
NsbI TGCGCA 1 cut(s) 918
NspI RCATGY 2 cut(s) 224, 1057
PciI ACATGT 2 cut(s) 220, 1053
PciSI GCTCTTC 1 cut(s) 1161
PctI GAATGC 2 cut(s) 586, 1462
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 5 cut(s) 116, 677, 777, 1200, 1237
PkrI GCNGC 2 cut(s) 342, 1270
Ppu21I YACGTR 2 cut(s) 131, 1315
PscI ACATGT 2 cut(s) 220, 1053
PshAI GACNNNNGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 1195
PspGI CCWGG 1 cut(s) 1195
PspN4I GGNNCC 2 cut(s) 506, 1293
PspPI GGNCC 2 cut(s) 1033, 1143
PsuI RGATCY 2 cut(s) 121, 1291
RsaI GTAC 3 cut(s) 427, 506, 1052
RsaNI GTAC 3 cut(s) 426, 505, 1051
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 1161
SaqAI TTAA 9 cut(s) 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479
SatI GCNGC 2 cut(s) 341, 1269
Sau3AI GATC 4 cut(s) 121, 804, 1087, 1291
Sau96I GGNCC 2 cut(s) 1033, 1143
ScrFI CCNGG 1 cut(s) 1197
SduI GDGCHC 1 cut(s) 1113
SfaNI GCATC 2 cut(s) 427, 1220
SfcI CTRYAG 3 cut(s) 183, 942, 1492
SinI GGWCC 1 cut(s) 1143
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 2 cut(s) 509, 1478
SmoI CTYRAG 2 cut(s) 509, 1478
SnaBI TACGTA 2 cut(s) 131, 1315
Sse9I AATT 8 cut(s) 85, 156, 329, 490, 521, 1262, 1286, 1440
SsiI CCGC 5 cut(s) 188, 398, 613, 1031, 1268
SspMI CTAG 4 cut(s) 462, 1100, 1140, 1296
StyD4I CCNGG 1 cut(s) 1195
StyI CCWWGG 1 cut(s) 1003
TaaI ACNGT 2 cut(s) 295, 410
TaiI ACGT 6 cut(s) 133, 287, 431, 477, 996, 1317
TaqI TCGA 4 cut(s) 150, 317, 377, 864
TasI AATT 8 cut(s) 85, 156, 329, 490, 521, 1262, 1286, 1440
TauI GCSGC 1 cut(s) 1271
TfiI GAWTC 5 cut(s) 116, 677, 777, 1200, 1237
Tru1I TTAA 9 cut(s) 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479
Tru9I TTAA 9 cut(s) 105, 359, 510, 650, 966, 1062, 1176, 1397, 1479
TseFI GTSAC 1 cut(s) 994
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 994
TspDTI ATGAA 6 cut(s) 335, 534, 1296, 1397, 1500, 1548
TspGWI ACGGA 3 cut(s) 892, 939, 1387
Vha464I CTTAAG 2 cut(s) 509, 1478
VpaK11BI GGWCC 1 cut(s) 1143
XagI CCTNNNNNAGG 1 cut(s) 244
XapI RAATTY 4 cut(s) 85, 156, 521, 1440
XceI RCATGY 2 cut(s) 224, 1057
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 4 cut(s) 462, 1100, 1140, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.