Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0016022

Physical Location & Seq

Genomic Coordinates Forward (+)

12728034 .. 12730291

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAAACCCATATTGTGCAGATTGAGAGAGATACAAAGGACAGTTCACACTTCAGCTTGTGCCCTTCTTACTGAAACCCAGAAAGCTAATGCCTATCTTCCTAGACGTTCAAAGACTTCAGAGACATTCTTGACTGCCCACCAAGTGTTCGACGAAACGCCTGACTTAAACGTGGACTTAAACGTGGTCTCGGCCACTACAATAATAGGCAGCTTTGCTCGGCAGCACCATCATGAAACCGCTGTGTATCTCTTTTCAAGAATGCTTGTTTTGAATATTCGACCCAATGAGTACACATTTGGCACTGTCATTCACTCCTCGACCGCGCTTGGAGATTTGACTATAGGCAAGCAACTTCATGCATGTGCAACAAAGATGGGTCTGCATTCGAATGTCTTTGTGGGGAGTGCAGTTTTGGATCTTTATGCCAAGCTGAGCATAATCCAGGATGCTCGAAGAGCTTTCGAAGATACCCAGAAGCCGAATGTGGTTTCCTACACTACATTGATATGTGCTTACCTGAAAAAGGAGATGCTTGAAGATGCTCTCGAGCTTTTCCGAGTGATGCCAGAGAGGAATGTAGTTTCATGGAATGCAATGATTGGAGGGTATAGCCAAACAGGCCACAATGAAGAGGCTGTGAATCTTTTCATTGAGATGCTTCGAAATGGGTTGGTGCCGAGTCAGTCTACTTTTCCTTGTGCTATAATTGCAGCTGCCAATATAGCAGCACTAGGAATTGGGAGAAGCTTTCATGCCTGTGCTGTCAAGGCTTTGGGTAAGTTTGATGTGTTTATTAGCAATTCTCTAATAAGCTTTTATGCAAAATGTGGGAGCATGGAAGATGGTCTCTTGGTTTTCGATAAGCTCAGGGGAAGAAACATTGTTTCTTGGAATGCTTTGATTTGTGGGTATGCTCAAAATGGTAAAGGAGAGGAAGCCATAAGTTTTTTCGAAAAGATGAGGGTCTCAGATTGTAAACCCAACAGTGTTACAGTTCTGGGGTTATTGTGGGCTTGTAATCATGCTGGTCTTGTTGACAAGGGTTACTCCTATTTTAACCAGGCAAGAATGGAGGACGCCGGCATTCTAAAGCCCGAGCATTATGCTTGTATGGTTGATTTGCTCTCGCGCTCAGGGTGTTTCAGACAAGCTGAGGAGTTTATTAGTGATTTGCCTTTTGAACCAGGTATTGGGTTTTGGAAGGCATTGCTTGGTGGCTGCCAAATCCACTCAAATATGGAATTGGGGGAGTTTGCTGCAAGAAGAATCTTGGCTTTGGATCCTGGAGATGTGTCATCATATGTTATGGTATCTAATGCACATTCTGCAGCTGGAAGGTGGCAGAGTGTGTCAACAGTAAGGAGAGAAATGAAAGACAAAGGGATGAAGAGGATTCCAGGTTGCAGTTGGATAGAAATCAGAAGCAAAGTTCATGTATTTACCACCGGCGACAAGAACCATGACCAAATGAATGAAATTTATACTGTGTTAGAAATTCTGTATAGTGCATTTGAGGGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

508

Amino Acids

56.43

Weight (kDa)

6.96

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	61 - 105	2.5e-08	PPR repeat family
PPR_1	PF12854	160 - 189	6.6e-07	PPR repeat
PPR_2	PF13041	161 - 194	3.3e-08	PPR repeat family
PPR	PF01535	164 - 194	6.9e-07	PPR repeat
PPR_2	PF13041	192 - 233	3.4e-11	PPR repeat family
PPR	PF01535	195 - 225	1.4e-08	PPR repeat
PPR_2	PF13041	293 - 337	1.2e-12	PPR repeat family
PPR	PF01535	296 - 326	3.3e-09	PPR repeat
E_motif	PF20431	411 - 473	2.9e-22	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42450 AT5G42450
fragaria_vesca	FvH4_6g14440 FvH4_6g14560
malus_domestica	MD12G1136500.v1.1
prunus_persica	Prupe.6G248900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0467611
rosa_laevigata	RLG00000024485
rosa_multiflora	Rmu_sc0011632.1_g000010
rosa_roxburghii	Rroxscaffold_6G00413550
rosa_rugosa	Rorug03G0088500
rosa_samantha	Rh3AG136800 Rh3BG158600 Rh3DG159100
rosa_wichuraiana	Rw3G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	676
AccB7I	CCANNNNNTGG	1 cut(s)	1193
AccI	GTMKAC	1 cut(s)	689
AccII	CGCG	2 cut(s)	326, 1132
AciI	CCGC	2 cut(s)	240, 324
AclWI	GGATC	3 cut(s)	426, 1277, 1290
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	1479, 1497
AcuI	CTGAAG	2 cut(s)	36, 102
AcyI	GRCGYC	1 cut(s)	1080
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	526, 1193
AgsI	TTSAA	5 cut(s)	111, 258, 274, 539, 1184
AjnI	CCWGG	5 cut(s)	444, 1062, 1186, 1285, 1399
AjuI	GAANNNNNNNTTGG	2 cut(s)	1176, 1208
Alw26I	GTCTC	4 cut(s)	116, 193, 854, 973
AlwI	GGATC	3 cut(s)	426, 1277, 1290
Ama87I	CYCGRG	2 cut(s)	548, 1097
AoxI	GGCC	2 cut(s)	192, 622
ApeKI	GCWGC	8 cut(s)	210, 223, 713, 716, 728, 1221, 1259, 1331
ApoI	RAATTY	2 cut(s)	1479, 1497
Asp700I	GAANNNNTTC	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	328, 1134
AsuII	TTCGAA	4 cut(s)	389, 465, 664, 954
AvaI	CYCGRG	2 cut(s)	548, 1097
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	1282
BanI	GGYRCC	1 cut(s)	676
BbvCI	CCTCAGC	1 cut(s)	1155
BbvI	GCAGC	8 cut(s)	222, 235, 703, 725, 740, 1208, 1246, 1343
BccI	CCATC	3 cut(s)	237, 370, 839
BcgI	CGANNNNNNTGC	2 cut(s)	1088, 1122
BciT130I	CCWGG	5 cut(s)	446, 1064, 1188, 1287, 1401
BcoDI	GTCTC	4 cut(s)	116, 193, 854, 973
BfaI	CTAG	2 cut(s)	102, 734
BfmI	CTRYAG	2 cut(s)	342, 1329
BglI	GCCNNNNNGGC	1 cut(s)	621
BisI	GCNGC	8 cut(s)	211, 224, 714, 717, 729, 1222, 1260, 1332
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	8 cut(s)	212, 225, 715, 718, 730, 1223, 1261, 1333
Bme1390I	CCNGG	5 cut(s)	446, 1064, 1188, 1287, 1401
BmeT110I	CYCGRG	2 cut(s)	548, 1097
BmiI	GGNNCC	2 cut(s)	678, 1284
BmrFI	CCNGG	5 cut(s)	446, 1064, 1188, 1287, 1401
BmsI	GCATC	5 cut(s)	439, 522, 532, 555, 648
BpmI	CTGGAG	1 cut(s)	1308
Bpu10I	CCTNAGC	3 cut(s)	869, 1135, 1155
Bpu1102I	GCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	4 cut(s)	389, 465, 664, 954
BsaBI	GATNNNNATC	1 cut(s)	1418
BsaHI	GRCGYC	1 cut(s)	1080
BsaI	GGTCTC	3 cut(s)	193, 854, 973
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 1193
Bse118I	RCCGGY	2 cut(s)	1082, 1448
Bse3DI	GCAATG	2 cut(s)	603, 1208
Bse8I	GATNNNNATC	1 cut(s)	1418
BseBI	CCWGG	5 cut(s)	446, 1064, 1188, 1287, 1401
BseGI	GGATG	2 cut(s)	454, 1392
BseJI	GATNNNNATC	1 cut(s)	1418
BseLI	CCNNNNNNNGG	2 cut(s)	526, 1193
BseMI	GCAATG	2 cut(s)	603, 1208
BseMII	CTCAG	5 cut(s)	425, 883, 984, 1146, 1149
BseRI	GAGGAG	2 cut(s)	307, 1172
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	8 cut(s)	222, 235, 703, 725, 740, 1208, 1246, 1343
BsgI	GTGCAG	2 cut(s)	37, 429
Bsh1236I	CGCG	2 cut(s)	326, 1132
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	194, 624
BshNI	GGYRCC	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	324
BsiHKCI	CYCGRG	2 cut(s)	548, 1097
BsiSI	CCGG	2 cut(s)	1083, 1449
BslI	CCNNNNNNNGG	2 cut(s)	526, 1193
BsmAI	GTCTC	4 cut(s)	116, 193, 854, 973
BsmI	GAATGC	5 cut(s)	267, 385, 598, 901, 1086
BsnI	GGCC	2 cut(s)	194, 624
Bso31I	GGTCTC	3 cut(s)	193, 854, 973
BsoBI	CYCGRG	2 cut(s)	548, 1097
Bsp119I	TTCGAA	4 cut(s)	389, 465, 664, 954
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	418, 1282
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	2 cut(s)	240, 324
BspANI	GGCC	2 cut(s)	194, 624
BspCNI	CTCAG	5 cut(s)	426, 882, 983, 1147, 1148
BspFNI	CGCG	2 cut(s)	326, 1132
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	678, 1284
BspMAI	CTGCAG	1 cut(s)	1333
BspPI	GGATC	3 cut(s)	426, 1277, 1290
BspQI	GCTCTTC	1 cut(s)	451
BspT104I	TTCGAA	4 cut(s)	389, 465, 664, 954
BspT107I	GGYRCC	1 cut(s)	676
BspTNI	GGTCTC	3 cut(s)	193, 854, 973
BsrDI	GCAATG	2 cut(s)	603, 1208
BsrFI	RCCGGY	2 cut(s)	1082, 1448
BssAI	RCCGGY	2 cut(s)	1082, 1448
BssMI	GATC	2 cut(s)	418, 1282
BssNI	GRCGYC	1 cut(s)	1080
Bst2UI	CCWGG	5 cut(s)	446, 1064, 1188, 1287, 1401
Bst4CI	ACNGT	6 cut(s)	43, 307, 989, 997, 1360, 1489
Bst6I	CTCTTC	3 cut(s)	451, 627, 1385
BstACI	GRCGYC	1 cut(s)	1080
BstAPI	GCANNNNNTGC	1 cut(s)	1328
BstBI	TTCGAA	4 cut(s)	389, 465, 664, 954
BstC8I	GCNNGC	2 cut(s)	350, 1084
BstDEI	CTNAG	5 cut(s)	434, 869, 970, 1135, 1155
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	454, 1392
BstFNI	CGCG	2 cut(s)	326, 1132
BstHHI	GCGC	2 cut(s)	328, 1134
BstKTI	GATC	2 cut(s)	421, 1285
BstMAI	GTCTC	4 cut(s)	116, 193, 854, 973
BstMBI	GATC	2 cut(s)	418, 1282
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	6 cut(s)	458, 621, 710, 725, 770, 1328
BstNI	CCWGG	5 cut(s)	446, 1064, 1188, 1287, 1401
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	5 cut(s)	444, 1062, 1186, 1285, 1399
BstSFI	CTRYAG	2 cut(s)	342, 1329
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	2 cut(s)	326, 1132
BstV1I	GCAGC	8 cut(s)	222, 235, 703, 725, 740, 1208, 1246, 1343
BstX2I	RGATCY	2 cut(s)	418, 1282
BstYI	RGATCY	2 cut(s)	418, 1282
BsuRI	GGCC	2 cut(s)	194, 624
BtsCI	GGATG	2 cut(s)	454, 1392
BtsIMutI	CAGTG	2 cut(s)	303, 994
Cac8I	GCNNGC	2 cut(s)	350, 1084
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	328, 1134
Cfr10I	RCCGGY	2 cut(s)	1082, 1448
CseI	GACGC	1 cut(s)	1088
CsiI	ACCWGGT	1 cut(s)	1186
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	9 cut(s)	233, 359, 363, 588, 755, 838, 1025, 1436, 1463
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	434, 869, 970, 1135, 1155
DpnI	GATC	2 cut(s)	420, 1284
DpnII	GATC	2 cut(s)	418, 1282
DraIII	CACNNNGTG	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	451, 627, 1385
EarI	CTCTTC	3 cut(s)	451, 627, 1385
Eco31I	GGTCTC	3 cut(s)	193, 854, 973
Eco57I	CTGAAG	2 cut(s)	36, 102
Eco88I	CYCGRG	2 cut(s)	548, 1097
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	5 cut(s)	444, 1062, 1186, 1285, 1399
EcoT22I	ATGCAT	1 cut(s)	364
FaeI	CATG	9 cut(s)	236, 362, 366, 591, 758, 841, 1028, 1439, 1466
FatI	CATG	9 cut(s)	232, 358, 362, 587, 754, 837, 1024, 1435, 1462
FauNDI	CATATG	1 cut(s)	1303
FblI	GTMKAC	1 cut(s)	689
Fnu4HI	GCNGC	8 cut(s)	211, 224, 714, 717, 729, 1222, 1260, 1332
FokI	GGATG	2 cut(s)	461, 1399
Fsp4HI	GCNGC	8 cut(s)	211, 224, 714, 717, 729, 1222, 1260, 1332
FspBI	CTAG	2 cut(s)	102, 734
GlaI	GCGC	2 cut(s)	327, 1133
GluI	GCNGC	8 cut(s)	211, 224, 714, 717, 729, 1222, 1260, 1332
GsuI	CTGGAG	1 cut(s)	1308
HaeIII	GGCC	2 cut(s)	194, 624
HapII	CCGG	2 cut(s)	1083, 1449
HgaI	GACGC	1 cut(s)	1088
HhaI	GCGC	2 cut(s)	328, 1134
Hin1I	GRCGYC	1 cut(s)	1080
Hin1II	CATG	9 cut(s)	236, 362, 366, 591, 758, 841, 1028, 1439, 1466
Hin6I	GCGC	2 cut(s)	326, 1132
HinP1I	GCGC	2 cut(s)	326, 1132
HincII	GTYRAC	2 cut(s)	1039, 1356
HindII	GTYRAC	2 cut(s)	1039, 1356
HindIII	AAGCTT	2 cut(s)	748, 814
HinfI	GANTC	4 cut(s)	643, 682, 1269, 1396
HpaII	CCGG	2 cut(s)	1083, 1449
Hpy166II	GTNNAC	7 cut(s)	46, 175, 294, 690, 980, 1039, 1356
Hpy188I	TCNGA	5 cut(s)	121, 560, 973, 1148, 1424
Hpy188III	TCNNGA	4 cut(s)	130, 233, 258, 548
Hpy8I	GTNNAC	7 cut(s)	46, 175, 294, 690, 980, 1039, 1356
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	74, 1198, 1332
HpyCH4III	ACNGT	6 cut(s)	43, 307, 989, 997, 1360, 1489
HpyCH4IV	ACGT	3 cut(s)	106, 171, 183
HpyF10VI	GCNNNNNNNGC	6 cut(s)	458, 621, 710, 725, 770, 1328
HpyF3I	CTNAG	5 cut(s)	434, 869, 970, 1135, 1155
HpySE526I	ACGT	3 cut(s)	106, 171, 183
Hsp92I	GRCGYC	1 cut(s)	1080
Hsp92II	CATG	9 cut(s)	236, 362, 366, 591, 758, 841, 1028, 1439, 1466
HspAI	GCGC	2 cut(s)	326, 1132
KroI	GCCGGC	1 cut(s)	1082
KroNI	GCCGGC	1 cut(s)	1084
Kzo9I	GATC	2 cut(s)	418, 1282
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	834
Lsp1109I	GCAGC	8 cut(s)	222, 235, 703, 725, 740, 1208, 1246, 1343
LweI	GCATC	5 cut(s)	439, 522, 532, 555, 648
MabI	ACCWGGT	1 cut(s)	1186
MaeI	CTAG	2 cut(s)	102, 734
MaeII	ACGT	3 cut(s)	106, 171, 183
MaeIII	GTNAC	2 cut(s)	991, 1046
MalI	GATC	2 cut(s)	420, 1284
MboI	GATC	2 cut(s)	418, 1282
MboII	GAAGA	9 cut(s)	89, 468, 479, 551, 644, 854, 888, 1278, 1402
MflI	RGATCY	2 cut(s)	418, 1282
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	6 cut(s)	708, 738, 802, 1244, 1479, 1497
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	1391
Mph1103I	ATGCAT	1 cut(s)	364
MroNI	GCCGGC	1 cut(s)	1082
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	3 cut(s)	167, 179, 1059
MslI	CAYNNNNRTG	6 cut(s)	231, 363, 390, 508, 656, 759
MspA1I	CMGCKG	3 cut(s)	242, 716, 1334
MspI	CCGG	2 cut(s)	1083, 1449
MspR9I	CCNGG	5 cut(s)	446, 1064, 1188, 1287, 1401
Mva1269I	GAATGC	5 cut(s)	267, 385, 598, 901, 1086
MvaI	CCWGG	5 cut(s)	446, 1064, 1188, 1287, 1401
MvnI	CGCG	2 cut(s)	326, 1132
MwoI	GCNNNNNNNGC	6 cut(s)	458, 621, 710, 725, 770, 1328
NaeI	GCCGGC	1 cut(s)	1084
NdeI	CATATG	1 cut(s)	1303
NdeII	GATC	2 cut(s)	418, 1282
NgoMIV	GCCGGC	1 cut(s)	1082
NlaIII	CATG	9 cut(s)	236, 362, 366, 591, 758, 841, 1028, 1439, 1466
NlaIV	GGNNCC	2 cut(s)	678, 1284
NmeAIII	GCCGAG	3 cut(s)	170, 199, 705
NsiI	ATGCAT	1 cut(s)	364
NspI	RCATGY	1 cut(s)	366
NspV	TTCGAA	4 cut(s)	389, 465, 664, 954
PaeR7I	CTCGAG	1 cut(s)	548
PagI	TCATGA	1 cut(s)	232
PciSI	GCTCTTC	1 cut(s)	451
PctI	GAATGC	5 cut(s)	267, 385, 598, 901, 1086
PdiI	GCCGGC	1 cut(s)	1084
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	643, 1269, 1396
PflMI	CCANNNNNTGG	1 cut(s)	1193
PfoI	TCCNGGA	2 cut(s)	444, 1285
PkrI	GCNGC	8 cut(s)	212, 225, 715, 718, 730, 1223, 1261, 1333
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Psp6I	CCWGG	5 cut(s)	444, 1062, 1186, 1285, 1399
PspGI	CCWGG	5 cut(s)	444, 1062, 1186, 1285, 1399
PspN4I	GGNNCC	2 cut(s)	678, 1284
PstI	CTGCAG	1 cut(s)	1333
PsuI	RGATCY	2 cut(s)	418, 1282
PvuII	CAGCTG	2 cut(s)	716, 1334
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	6 cut(s)	231, 363, 390, 508, 656, 759
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	3 cut(s)	167, 179, 1059
SatI	GCNGC	8 cut(s)	211, 224, 714, 717, 729, 1222, 1260, 1332
Sau3AI	GATC	2 cut(s)	418, 1282
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	5 cut(s)	446, 1064, 1188, 1287, 1401
SduI	GDGCHC	1 cut(s)	64
SexAI	ACCWGGT	1 cut(s)	1186
SfaNI	GCATC	5 cut(s)	439, 522, 532, 555, 648
SfcI	CTRYAG	2 cut(s)	342, 1329
Sfr274I	CTCGAG	1 cut(s)	548
SfuI	TTCGAA	4 cut(s)	389, 465, 664, 954
SgrAI	CRCCGGYG	1 cut(s)	1448
SlaI	CTCGAG	1 cut(s)	548
SmiMI	CAYNNNNRTG	6 cut(s)	231, 363, 390, 508, 656, 759
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	6 cut(s)	708, 738, 802, 1244, 1479, 1497
SsiI	CCGC	2 cut(s)	240, 324
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	102, 734
StyD4I	CCNGG	5 cut(s)	444, 1062, 1186, 1285, 1399
TaaI	ACNGT	6 cut(s)	43, 307, 989, 997, 1360, 1489
TaiI	ACGT	3 cut(s)	109, 174, 186
TasI	AATT	6 cut(s)	708, 738, 802, 1244, 1479, 1497
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	3 cut(s)	643, 1269, 1396
Tru1I	TTAA	3 cut(s)	167, 179, 1059
Tru9I	TTAA	3 cut(s)	167, 179, 1059
TscAI	CASTG	2 cut(s)	310, 994
TseI	GCWGC	8 cut(s)	210, 223, 713, 716, 728, 1221, 1259, 1331
TspRI	CASTG	2 cut(s)	310, 994
Van91I	CCANNNNNTGG	1 cut(s)	1193
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	1479, 1497
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1407
XhoI	CTCGAG	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	689
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	2 cut(s)	102, 734
Zsp2I	ATGCAT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.