FvH4_6g14440

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016022
Physical Location & Seq
Reverse (-)
8885698 .. 8886792
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14440.t1

Sequence Viewer

Length: 1095 bp
ATGAAATACATGTTTTGCAGATACCCTCTCTCTCAATTCATACAAAGGACAGTTCACACTTCCGCTTGTACCCTTCCTGCTGAAACCCGGAAAGCTAATGCCTATCTTGTGAGGCATGCAGAGACGTCAGACGCATTCTTGAATGCCCACCAAGTGTTCGACGAAACGCCTGACTTAAACGTGGTCTCGGCCACAACAATAATAGGCAGCTTTGCTCGGCAGCATCATCATGAAGAAGCTGTGCACCTCTTTTCAAGAATGCTTGTGTTGAATATTCGACCCAATGAGTACACGTTTGGCACTGTCATTCCCTCCTCGACCGCGCTTGGAGATTTGAGTATAGGTAAGCAACTTCATGCATTTGCAAAAAAGATGGGGTTGCATTCTAATGTGTTTGTGGGGAGTGCAATGTTGGACCTTTATGCCAAGCTGAGCGTAATCCAGGATGCTCGGAGAGCTTTCGAAGATACCCAGAAGCCGAATGTTGTTTCCTACACGACATTGATATGTGCTTACCTGAAAAAGGAGATGCTTGAAGATGCTCTTGAGCTTTTTAAAGTGATGCCAGAGAGGAATGTAGTTTCATGGAATGCTATGATTGGAGGGTATAGCCAAACAGGCCACAATGAAGAGGCTGTCAATCTTTTCAGTGAGATGCTTCGAAATGGGTTGGTGCCGAGTCAATCTACTTTTCCTTGTGCTATAATTGCAGCTGCTAATATAGCAGCGCTAGGAATTGGGAGAAGCTTTCATGCCTGTGCTGTCAAGGCTTTGGGTAAGTTCAATGTGTTTATTAGCAATTCTCTAATAAGTTTCTATGCAAAATGTGGGAGCATGGAAGATAGTCTCTTGGTTTTCGATAGACTCAGGGGAAGAAACATTGTTTCTTGGAATGCTGTGATTTGTGGGTACGCTCAAAATGGTAAAGGAGAGGAAGCCATAAGCTTTTTCGAAAAGATGAGGGTCTCAGAATGTAAACCCAACAGTGTTACACTTCTTGGGTTATTGTGGGCGTGTAATCATGCTGGTCTTGTTGACAAGGGTTACTCCTATTATAACCAGGTGAGAACGGAGGAGCCCGGCATTAGAGCCTGA

Protein Analysis

365

Amino Acids

40.4

Weight (kDa)

8.3

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 60 - 103 3e-09 PPR repeat family
PPR_1 PF12854 159 - 188 8.7e-07 PPR repeat
PPR_2 PF13041 160 - 193 1e-08 PPR repeat family
PPR PF01535 163 - 193 2.6e-07 PPR repeat
PPR_2 PF13041 191 - 232 5.6e-12 PPR repeat family
PPR PF01535 194 - 224 4.7e-09 PPR repeat
PPR_2 PF13041 292 - 336 2.3e-12 PPR repeat family
PPR PF01535 295 - 324 8.7e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42450 AT5G42450
fragaria_vesca FvH4_6g14440 FvH4_6g14560
malus_domestica MD12G1136500.v1.1
prunus_persica Prupe.6G248900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0467611
rosa_laevigata RLG00000024485
rosa_multiflora Rmu_sc0011632.1_g000010
rosa_roxburghii Rroxscaffold_6G00413550
rosa_rugosa Rorug03G0088500
rosa_samantha Rh3AG136800 Rh3BG158600 Rh3DG159100
rosa_wichuraiana Rw3G012960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1056
AatII GACGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 673
AccII CGCG 1 cut(s) 323
AciI CCGC 2 cut(s) 63, 321
AcoI YGGCCR 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 125
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 3 cut(s) 70, 290, 911
AfeI AGCGCT 1 cut(s) 729
AfiI CCNNNNNNNGG 1 cut(s) 523
AflIII ACRYGT 2 cut(s) 9, 291
AgsI TTSAA 5 cut(s) 142, 255, 271, 536, 784
AjnI CCWGG 2 cut(s) 441, 1059
AluBI AGCT 9 cut(s) 95, 210, 239, 430, 458, 550, 713, 747, 945
AluI AGCT 9 cut(s) 95, 210, 239, 430, 458, 550, 713, 747, 945
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 4 cut(s) 116, 190, 851, 970
Alw44I GTGCAC 1 cut(s) 242
Aor51HI AGCGCT 1 cut(s) 729
AoxI GGCC 2 cut(s) 189, 619
ApaLI GTGCAC 1 cut(s) 242
ApeKI GCWGC 5 cut(s) 207, 220, 710, 713, 725
AspLEI GCGC 2 cut(s) 325, 730
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 2 cut(s) 88, 1080
AsuHPI GGTGA 1 cut(s) 1075
AsuII TTCGAA 3 cut(s) 462, 661, 951
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 1080
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 5 cut(s) 219, 232, 700, 722, 737
BccI CCATC 1 cut(s) 367
BciT130I CCWGG 2 cut(s) 443, 1061
BcnI CCSGG 2 cut(s) 88, 1080
BcoDI GTCTC 4 cut(s) 116, 190, 851, 970
BfaI CTAG 1 cut(s) 731
BfoI RGCGCY 1 cut(s) 731
BglI GCCNNNNNGGC 1 cut(s) 618
BisI GCNGC 5 cut(s) 208, 221, 711, 714, 726
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 5 cut(s) 209, 222, 712, 715, 727
Bme1390I CCNGG 4 cut(s) 88, 443, 1061, 1080
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 675, 1077
BmrFI CCNGG 4 cut(s) 88, 443, 1061, 1080
BmsI GCATC 6 cut(s) 232, 436, 519, 529, 552, 645
Bpu1102I GCTNAGC 1 cut(s) 431
Bpu14I TTCGAA 3 cut(s) 462, 661, 951
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 2 cut(s) 88, 1080
BsaHI GRCGYC 1 cut(s) 125
BsaI GGTCTC 2 cut(s) 190, 970
Bsc4I CCNNNNNNNGG 1 cut(s) 523
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 2 cut(s) 443, 1061
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 523
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 3 cut(s) 422, 880, 981
BseRI GAGGAG 2 cut(s) 304, 1088
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 5 cut(s) 219, 232, 700, 722, 737
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 191, 621
BshNI GGYRCC 1 cut(s) 673
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 88, 1080
BslI CCNNNNNNNGG 1 cut(s) 523
BsmAI GTCTC 4 cut(s) 116, 190, 851, 970
BsmBI CGTCTC 1 cut(s) 116
BsmI GAATGC 6 cut(s) 134, 148, 264, 382, 595, 898
BsnI GGCC 2 cut(s) 191, 621
Bso31I GGTCTC 2 cut(s) 190, 970
Bsp119I TTCGAA 3 cut(s) 462, 661, 951
Bsp1286I GDGCHC 2 cut(s) 246, 1080
Bsp1720I GCTNAGC 1 cut(s) 431
BspACI CCGC 2 cut(s) 63, 321
BspANI GGCC 2 cut(s) 191, 621
BspCNI CTCAG 3 cut(s) 423, 879, 980
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 675, 1077
BspT104I TTCGAA 3 cut(s) 462, 661, 951
BspT107I GGYRCC 1 cut(s) 673
BspTNI GGTCTC 2 cut(s) 190, 970
BsrDI GCAATG 1 cut(s) 414
BssNI GRCGYC 1 cut(s) 125
Bst2UI CCWGG 2 cut(s) 443, 1061
Bst4CI ACNGT 3 cut(s) 52, 304, 986
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 125
BstBI TTCGAA 3 cut(s) 462, 661, 951
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 431, 866, 967
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 2 cut(s) 325, 730
BstMAI GTCTC 4 cut(s) 116, 190, 851, 970
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 5 cut(s) 455, 618, 707, 722, 767
BstNI CCWGG 2 cut(s) 443, 1061
BstNSI RCATGY 2 cut(s) 13, 119
BstSCI CCNGG 4 cut(s) 86, 441, 1059, 1078
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 5 cut(s) 219, 232, 700, 722, 737
BsuRI GGCC 2 cut(s) 191, 621
BtsCI GGATG 1 cut(s) 451
BtsIMutI CAGTG 3 cut(s) 300, 655, 991
Cac8I GCNNGC 1 cut(s) 117
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 325, 730
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 1059
Csp6I GTAC 3 cut(s) 69, 289, 910
CviAII CATG 8 cut(s) 10, 116, 230, 356, 585, 752, 835, 1022
CviQI GTAC 3 cut(s) 69, 289, 910
DdeI CTNAG 3 cut(s) 431, 866, 967
DraI TTTAAA 1 cut(s) 556
DraIII CACNNNGTG 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 1080
Eco31I GGTCTC 2 cut(s) 190, 970
Eco47I GGWCC 1 cut(s) 415
Eco47III AGCGCT 1 cut(s) 729
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 441, 1059
EcoT22I ATGCAT 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 1080
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 8 cut(s) 13, 119, 233, 359, 588, 755, 838, 1025
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FatI CATG 8 cut(s) 9, 115, 229, 355, 584, 751, 834, 1021
Fnu4HI GCNGC 5 cut(s) 208, 221, 711, 714, 726
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 1080
Fsp4HI GCNGC 5 cut(s) 208, 221, 711, 714, 726
FspBI CTAG 1 cut(s) 731
GlaI GCGC 2 cut(s) 324, 729
GluI GCNGC 5 cut(s) 208, 221, 711, 714, 726
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 2 cut(s) 191, 621
HapII CCGG 2 cut(s) 88, 1080
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 325, 730
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 8 cut(s) 13, 119, 233, 359, 588, 755, 838, 1025
Hin6I GCGC 2 cut(s) 323, 728
HinP1I GCGC 2 cut(s) 323, 728
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HindIII AAGCTT 2 cut(s) 745, 943
HinfI GANTC 2 cut(s) 679, 864
HpaII CCGG 2 cut(s) 88, 1080
HphI GGTGA 1 cut(s) 1075
Hpy166II GTNNAC 5 cut(s) 55, 244, 291, 977, 1036
Hpy188I TCNGA 3 cut(s) 130, 453, 970
Hpy188III TCNNGA 4 cut(s) 139, 230, 255, 545
Hpy8I GTNNAC 5 cut(s) 55, 244, 291, 977, 1036
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 3 cut(s) 52, 304, 986
HpyCH4IV ACGT 3 cut(s) 125, 180, 293
HpyCH4V TGCA 9 cut(s) 18, 119, 244, 359, 365, 382, 407, 710, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 455, 618, 707, 722, 767
HpyF3I CTNAG 3 cut(s) 431, 866, 967
HpySE526I ACGT 3 cut(s) 125, 180, 293
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 8 cut(s) 13, 119, 233, 359, 588, 755, 838, 1025
HspAI GCGC 2 cut(s) 323, 728
LmnI GCTCC 2 cut(s) 831, 1075
Lsp1109I GCAGC 5 cut(s) 219, 232, 700, 722, 737
LweI GCATC 6 cut(s) 232, 436, 519, 529, 552, 645
MabI ACCWGGT 1 cut(s) 1059
MaeI CTAG 1 cut(s) 731
MaeII ACGT 3 cut(s) 125, 180, 293
MaeIII GTNAC 2 cut(s) 988, 1043
MboII GAAGA 6 cut(s) 245, 476, 548, 641, 851, 885
MhlI GDGCHC 2 cut(s) 246, 1080
MluCI AATT 4 cut(s) 35, 705, 735, 799
MlyI GAGTC 2 cut(s) 688, 858
MmeI TCCRAC 1 cut(s) 393
Mph1103I ATGCAT 1 cut(s) 361
MseI TTAA 2 cut(s) 176, 555
MslI CAYNNNNRTG 4 cut(s) 228, 387, 505, 756
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 2 cut(s) 88, 1080
MspR9I CCNGG 4 cut(s) 88, 443, 1061, 1080
Mva1269I GAATGC 6 cut(s) 134, 148, 264, 382, 595, 898
MvaI CCWGG 2 cut(s) 443, 1061
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 5 cut(s) 455, 618, 707, 722, 767
NciI CCSGG 2 cut(s) 88, 1080
NlaIII CATG 8 cut(s) 13, 119, 233, 359, 588, 755, 838, 1025
NlaIV GGNNCC 2 cut(s) 675, 1077
NmeAIII GCCGAG 3 cut(s) 167, 196, 702
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 2 cut(s) 13, 119
NspV TTCGAA 3 cut(s) 462, 661, 951
PaeI GCATGC 1 cut(s) 119
PagI TCATGA 1 cut(s) 229
PciI ACATGT 1 cut(s) 9
PctI GAATGC 6 cut(s) 134, 148, 264, 382, 595, 898
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 5 cut(s) 209, 222, 712, 715, 727
PleI GAGTC 2 cut(s) 687, 858
PpsI GAGTC 2 cut(s) 687, 858
PscI ACATGT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 1056
Psp6I CCWGG 2 cut(s) 441, 1059
PspGI CCWGG 2 cut(s) 441, 1059
PspN4I GGNNCC 2 cut(s) 675, 1077
PspPI GGNCC 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 3 cut(s) 70, 290, 911
RsaNI GTAC 3 cut(s) 69, 289, 910
RseI CAYNNNNRTG 4 cut(s) 228, 387, 505, 756
SaqAI TTAA 2 cut(s) 176, 555
SatI GCNGC 5 cut(s) 208, 221, 711, 714, 726
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 2 cut(s) 688, 858
ScrFI CCNGG 4 cut(s) 88, 443, 1061, 1080
SduI GDGCHC 2 cut(s) 246, 1080
SexAI ACCWGGT 1 cut(s) 1059
SfaNI GCATC 6 cut(s) 232, 436, 519, 529, 552, 645
SfuI TTCGAA 3 cut(s) 462, 661, 951
SinI GGWCC 1 cut(s) 415
SmiMI CAYNNNNRTG 4 cut(s) 228, 387, 505, 756
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 119
Sse9I AATT 4 cut(s) 35, 705, 735, 799
SsiI CCGC 2 cut(s) 63, 321
SspI AATATT 1 cut(s) 274
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 4 cut(s) 86, 441, 1059, 1078
TaaI ACNGT 3 cut(s) 52, 304, 986
TaiI ACGT 3 cut(s) 128, 183, 296
TaqI TCGA 7 cut(s) 159, 277, 317, 462, 661, 858, 951
TasI AATT 4 cut(s) 35, 705, 735, 799
TatI WGTACW 1 cut(s) 288
Tru1I TTAA 2 cut(s) 176, 555
Tru9I TTAA 2 cut(s) 176, 555
TscAI CASTG 3 cut(s) 307, 655, 991
TseI GCWGC 5 cut(s) 207, 220, 710, 713, 725
TspDTI ATGAA 7 cut(s) 17, 28, 246, 344, 573, 642, 740
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 3 cut(s) 307, 655, 991
VneI GTGCAC 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 521
XceI RCATGY 2 cut(s) 13, 119
XspI CTAG 1 cut(s) 731
ZraI GACGTC 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.