Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42450 AT5G42450 |
| fragaria_vesca | FvH4_6g14440 FvH4_6g14560 |
| malus_domestica | MD12G1136500.v1.1 |
| prunus_persica | Prupe.6G248900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0467611 |
| rosa_laevigata | RLG00000024485 |
| rosa_multiflora | Rmu_sc0011632.1_g000010 |
| rosa_roxburghii | Rroxscaffold_6G00413550 |
| rosa_rugosa | Rorug03G0088500 |
| rosa_samantha | Rh3AG136800 Rh3BG158600 Rh3DG159100 |
| rosa_wichuraiana | Rw3G012960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 947, 1498 |
| AccB1I | GGYRCC | 3 cut(s) | 896, 947, 1498 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2015 |
| AciI | CCGC | 1 cut(s) | 2151 |
| AclI | AACGTT | 1 cut(s) | 1235 |
| AclWI | GGATC | 2 cut(s) | 2099, 2112 |
| AcoI | YGGCCR | 1 cut(s) | 1014 |
| AcsI | RAATTY | 3 cut(s) | 1112, 1592, 2319 |
| AcuI | CTGAAG | 2 cut(s) | 1934, 2130 |
| AcvI | CACGTG | 1 cut(s) | 800 |
| AdeI | CACNNNGTG | 1 cut(s) | 2293 |
| AfaI | GTAC | 2 cut(s) | 949, 1500 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 545, 1348, 1959, 2015 |
| AjiI | CACGTC | 1 cut(s) | 1020 |
| AjnI | CCWGG | 5 cut(s) | 754, 1266, 1863, 2008, 2221 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 700, 732, 1104, 1136, 1998, 2030 |
| Alw21I | GWGCWC | 1 cut(s) | 1926 |
| Alw26I | GTCTC | 3 cut(s) | 523, 1149, 1676 |
| AlwI | GGATC | 2 cut(s) | 2099, 2112 |
| AoxI | GGCC | 5 cut(s) | 406, 458, 823, 1014, 1444 |
| ApeKI | GCWGC | 9 cut(s) | 155, 1032, 1045, 1535, 1538, 1550, 2081, 2153, 2226 |
| ApoI | RAATTY | 3 cut(s) | 1112, 1592, 2319 |
| AseI | ATTAAT | 1 cut(s) | 668 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 327, 1376 |
| Asp718I | GGTACC | 2 cut(s) | 947, 1498 |
| AspS9I | GGNCC | 1 cut(s) | 578 |
| AsuC2I | CCSGG | 1 cut(s) | 1954 |
| AsuHPI | GGTGA | 3 cut(s) | 662, 744, 2279 |
| AsuII | TTCGAA | 2 cut(s) | 1094, 1211 |
| AvaII | GGWCC | 1 cut(s) | 578 |
| BaeGI | GKGCMC | 1 cut(s) | 901 |
| BamHI | GGATCC | 1 cut(s) | 2104 |
| BanI | GGYRCC | 3 cut(s) | 896, 947, 1498 |
| BbrPI | CACGTG | 1 cut(s) | 800 |
| BbsI | GAAGAC | 2 cut(s) | 556, 1905 |
| Bbv12I | GWGCWC | 1 cut(s) | 1926 |
| BbvCI | CCTCAGC | 1 cut(s) | 1977 |
| BbvI | GCAGC | 9 cut(s) | 142, 1044, 1057, 1525, 1547, 1562, 2093, 2165, 2213 |
| BccI | CCATC | 7 cut(s) | 85, 226, 310, 781, 1059, 2157, 2292 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 678, 712 |
| BciT130I | CCWGG | 5 cut(s) | 756, 1268, 1865, 2010, 2223 |
| BciVI | GTATCC | 1 cut(s) | 565 |
| BclI | TGATCA | 3 cut(s) | 19, 232, 652 |
| BcnI | CCSGG | 1 cut(s) | 1954 |
| BcoDI | GTCTC | 3 cut(s) | 523, 1149, 1676 |
| BfaI | CTAG | 4 cut(s) | 74, 522, 1556, 2085 |
| BfmI | CTRYAG | 1 cut(s) | 2227 |
| BfuI | GTATCC | 1 cut(s) | 565 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 457, 1443 |
| BglII | AGATCT | 1 cut(s) | 1240 |
| BisI | GCNGC | 9 cut(s) | 156, 1033, 1046, 1536, 1539, 1551, 2082, 2154, 2227 |
| BlsI | GCNGC | 9 cut(s) | 157, 1034, 1047, 1537, 1540, 1552, 2083, 2155, 2228 |
| Bme1390I | CCNGG | 6 cut(s) | 756, 1268, 1865, 1954, 2010, 2223 |
| Bme18I | GGWCC | 1 cut(s) | 578 |
| BmgBI | CACGTC | 1 cut(s) | 1020 |
| BmgT120I | GGNCC | 1 cut(s) | 578 |
| BmiI | GGNNCC | 6 cut(s) | 481, 898, 949, 1500, 2106, 2220 |
| BmrFI | CCNGG | 6 cut(s) | 756, 1268, 1865, 1954, 2010, 2223 |
| BmrI | ACTGGG | 1 cut(s) | 2280 |
| BmsI | GCATC | 6 cut(s) | 546, 844, 946, 1261, 1377, 1470 |
| BmuI | ACTGGG | 1 cut(s) | 2280 |
| BpiI | GAAGAC | 2 cut(s) | 556, 1905 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1920, 1977 |
| Bpu14I | TTCGAA | 2 cut(s) | 1094, 1211 |
| BpuEI | CTTGAG | 3 cut(s) | 453, 764, 1021 |
| BpuMI | CCSGG | 1 cut(s) | 1954 |
| BsaAI | YACGTR | 1 cut(s) | 800 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2240 |
| BsaI | GGTCTC | 2 cut(s) | 523, 1149 |
| BsaJI | CCNNGG | 4 cut(s) | 403, 951, 1266, 1864 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 545, 1348, 1959, 2015 |
| Bse1I | ACTGG | 4 cut(s) | 187, 580, 976, 2275 |
| Bse3DI | GCAATG | 5 cut(s) | 516, 533, 1425, 1530, 2030 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2240 |
| BseBI | CCWGG | 5 cut(s) | 756, 1268, 1865, 2010, 2223 |
| BseDI | CCNNGG | 4 cut(s) | 403, 951, 1266, 1864 |
| BseGI | GGATG | 4 cut(s) | 218, 961, 1276, 1788 |
| BseJI | GATNNNNATC | 1 cut(s) | 2240 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 545, 1348, 1959, 2015 |
| BseMI | GCAATG | 5 cut(s) | 516, 533, 1425, 1530, 2030 |
| BseMII | CTCAG | 3 cut(s) | 779, 1911, 1968 |
| BseNI | ACTGG | 4 cut(s) | 187, 580, 976, 2275 |
| BseRI | GAGGAG | 3 cut(s) | 116, 134, 1994 |
| BseSI | GKGCMC | 1 cut(s) | 901 |
| BseXI | GCAGC | 9 cut(s) | 142, 1044, 1057, 1525, 1547, 1562, 2093, 2165, 2213 |
| BseYI | CCCAGC | 1 cut(s) | 1904 |
| BsgI | GTGCAG | 2 cut(s) | 43, 1131 |
| BshFI | GGCC | 5 cut(s) | 408, 460, 825, 1016, 1446 |
| BshNI | GGYRCC | 3 cut(s) | 896, 947, 1498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1926 |
| BsiSI | CCGG | 1 cut(s) | 1954 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 545, 1348, 1959, 2015 |
| BsmAI | GTCTC | 3 cut(s) | 523, 1149, 1676 |
| BsmI | GAATGC | 6 cut(s) | 959, 1089, 1207, 1420, 1723, 1908 |
| BsnI | GGCC | 5 cut(s) | 408, 460, 825, 1016, 1446 |
| Bso31I | GGTCTC | 2 cut(s) | 523, 1149 |
| Bsp119I | TTCGAA | 2 cut(s) | 1094, 1211 |
| Bsp1286I | GDGCHC | 2 cut(s) | 901, 1926 |
| Bsp143I | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| BspACI | CCGC | 1 cut(s) | 2151 |
| BspANI | GGCC | 5 cut(s) | 408, 460, 825, 1016, 1446 |
| BspCNI | CTCAG | 3 cut(s) | 778, 1912, 1969 |
| BspHI | TCATGA | 1 cut(s) | 1054 |
| BspLI | GGNNCC | 6 cut(s) | 481, 898, 949, 1500, 2106, 2220 |
| BspMAI | CTGCAG | 1 cut(s) | 2231 |
| BspPI | GGATC | 2 cut(s) | 2099, 2112 |
| BspQI | GCTCTTC | 1 cut(s) | 333 |
| BspT104I | TTCGAA | 2 cut(s) | 1094, 1211 |
| BspT107I | GGYRCC | 3 cut(s) | 896, 947, 1498 |
| BspTNI | GGTCTC | 2 cut(s) | 523, 1149 |
| BsrDI | GCAATG | 5 cut(s) | 516, 533, 1425, 1530, 2030 |
| BsrI | ACTGG | 4 cut(s) | 187, 580, 976, 2275 |
| BssECI | CCNNGG | 4 cut(s) | 403, 951, 1266, 1864 |
| BssMI | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| BssT1I | CCWWGG | 1 cut(s) | 403 |
| Bst2UI | CCWGG | 5 cut(s) | 756, 1268, 1865, 2010, 2223 |
| Bst4CI | ACNGT | 1 cut(s) | 1129 |
| Bst6I | CTCTTC | 3 cut(s) | 333, 615, 1449 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 425 |
| BstBAI | YACGTR | 1 cut(s) | 800 |
| BstBI | TTCGAA | 2 cut(s) | 1094, 1211 |
| BstC8I | GCNNGC | 8 cut(s) | 160, 410, 561, 827, 973, 1172, 1840, 2158 |
| BstDEI | CTNAG | 4 cut(s) | 765, 1484, 1920, 1977 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1346 |
| BstF5I | GGATG | 4 cut(s) | 218, 961, 1276, 1788 |
| BstKTI | GATC | 6 cut(s) | 22, 126, 235, 655, 1243, 2107 |
| BstMAI | GTCTC | 3 cut(s) | 523, 1149, 1676 |
| BstMBI | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 425, 457, 1280, 1443, 1532, 1547, 2150 |
| BstNI | CCWGG | 5 cut(s) | 756, 1268, 1865, 2010, 2223 |
| BstNSI | RCATGY | 2 cut(s) | 839, 1188 |
| BstSCI | CCNGG | 6 cut(s) | 754, 1266, 1863, 1952, 2008, 2221 |
| BstSFI | CTRYAG | 1 cut(s) | 2227 |
| BstSLI | GKGCMC | 1 cut(s) | 901 |
| BstV1I | GCAGC | 9 cut(s) | 142, 1044, 1057, 1525, 1547, 1562, 2093, 2165, 2213 |
| BstV2I | GAAGAC | 2 cut(s) | 556, 1905 |
| BstX2I | RGATCY | 2 cut(s) | 1240, 2104 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BstYI | RGATCY | 2 cut(s) | 1240, 2104 |
| BsuI | GTATCC | 1 cut(s) | 565 |
| BsuRI | GGCC | 5 cut(s) | 408, 460, 825, 1016, 1446 |
| BtrI | CACGTC | 1 cut(s) | 1020 |
| BtsCI | GGATG | 4 cut(s) | 218, 961, 1276, 1788 |
| BtsIMutI | CAGTG | 1 cut(s) | 1125 |
| Cac8I | GCNNGC | 8 cut(s) | 160, 410, 561, 827, 973, 1172, 1840, 2158 |
| CciI | TCATGA | 1 cut(s) | 1054 |
| Cfr13I | GGNCC | 1 cut(s) | 578 |
| CsiI | ACCWGGT | 1 cut(s) | 2008 |
| Csp6I | GTAC | 2 cut(s) | 948, 1499 |
| CviQI | GTAC | 2 cut(s) | 948, 1499 |
| DdeI | CTNAG | 4 cut(s) | 765, 1484, 1920, 1977 |
| DpnI | GATC | 6 cut(s) | 21, 125, 234, 654, 1242, 2106 |
| DpnII | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| DraIII | CACNNNGTG | 1 cut(s) | 2293 |
| EaeI | YGGCCR | 1 cut(s) | 1014 |
| Eam1104I | CTCTTC | 3 cut(s) | 333, 615, 1449 |
| EarI | CTCTTC | 3 cut(s) | 333, 615, 1449 |
| Eco130I | CCWWGG | 1 cut(s) | 403 |
| Eco147I | AGGCCT | 2 cut(s) | 408, 460 |
| Eco31I | GGTCTC | 2 cut(s) | 523, 1149 |
| Eco47I | GGWCC | 1 cut(s) | 578 |
| Eco57I | CTGAAG | 2 cut(s) | 1934, 2130 |
| Eco72I | CACGTG | 1 cut(s) | 800 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1346 |
| EcoRII | CCWGG | 5 cut(s) | 754, 1266, 1863, 2008, 2221 |
| EcoT14I | CCWWGG | 1 cut(s) | 403 |
| EcoT22I | ATGCAT | 3 cut(s) | 961, 1186, 1339 |
| ErhI | CCWWGG | 1 cut(s) | 403 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 315, 347, 2019, 2051 |
| FauNDI | CATATG | 1 cut(s) | 2125 |
| FbaI | TGATCA | 3 cut(s) | 19, 232, 652 |
| Fnu4HI | GCNGC | 9 cut(s) | 156, 1033, 1046, 1536, 1539, 1551, 2082, 2154, 2227 |
| FokI | GGATG | 4 cut(s) | 205, 968, 1283, 1795 |
| Fsp4HI | GCNGC | 9 cut(s) | 156, 1033, 1046, 1536, 1539, 1551, 2082, 2154, 2227 |
| FspBI | CTAG | 4 cut(s) | 74, 522, 1556, 2085 |
| GluI | GCNGC | 9 cut(s) | 156, 1033, 1046, 1536, 1539, 1551, 2082, 2154, 2227 |
| GsaI | CCCAGC | 1 cut(s) | 1908 |
| HaeIII | GGCC | 5 cut(s) | 408, 460, 825, 1016, 1446 |
| HapII | CCGG | 1 cut(s) | 1954 |
| HincII | GTYRAC | 2 cut(s) | 1143, 1861 |
| HindII | GTYRAC | 2 cut(s) | 1143, 1861 |
| HindIII | AAGCTT | 7 cut(s) | 50, 1355, 1365, 1373, 1604, 1636, 1768 |
| HinfI | GANTC | 4 cut(s) | 77, 317, 431, 695 |
| HpaII | CCGG | 1 cut(s) | 1954 |
| HphI | GGTGA | 3 cut(s) | 662, 744, 2279 |
| Hpy166II | GTNNAC | 4 cut(s) | 7, 752, 1143, 1861 |
| Hpy188I | TCNGA | 6 cut(s) | 322, 768, 870, 955, 1914, 1970 |
| Hpy188III | TCNNGA | 7 cut(s) | 23, 148, 470, 1055, 1080, 2108, 2245 |
| Hpy8I | GTNNAC | 4 cut(s) | 7, 752, 1143, 1861 |
| Hpy99I | CGWCG | 1 cut(s) | 989 |
| HpyAV | CCTTC | 3 cut(s) | 145, 911, 947 |
| HpyCH4III | ACNGT | 1 cut(s) | 1129 |
| HpyCH4IV | ACGT | 3 cut(s) | 799, 1019, 1235 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 425, 457, 1280, 1443, 1532, 1547, 2150 |
| HpyF3I | CTNAG | 4 cut(s) | 765, 1484, 1920, 1977 |
| HpySE526I | ACGT | 3 cut(s) | 799, 1019, 1235 |
| KpnI | GGTACC | 2 cut(s) | 951, 1502 |
| Ksp22I | TGATCA | 3 cut(s) | 19, 232, 652 |
| Kzo9I | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| LguI | GCTCTTC | 1 cut(s) | 333 |
| LmnI | GCTCC | 1 cut(s) | 485 |
| Lsp1109I | GCAGC | 9 cut(s) | 142, 1044, 1057, 1525, 1547, 1562, 2093, 2165, 2213 |
| LweI | GCATC | 6 cut(s) | 546, 844, 946, 1261, 1377, 1470 |
| MabI | ACCWGGT | 1 cut(s) | 2008 |
| MaeI | CTAG | 4 cut(s) | 74, 522, 1556, 2085 |
| MaeII | ACGT | 3 cut(s) | 799, 1019, 1235 |
| MaeIII | GTNAC | 3 cut(s) | 437, 1813, 2266 |
| MalI | GATC | 6 cut(s) | 21, 125, 234, 654, 1242, 2106 |
| MboI | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| MfeI | CAATTG | 1 cut(s) | 830 |
| MflI | RGATCY | 2 cut(s) | 1240, 2104 |
| MhlI | GDGCHC | 2 cut(s) | 901, 1926 |
| MlyI | GAGTC | 1 cut(s) | 704 |
| MmeI | TCCRAC | 2 cut(s) | 820, 2213 |
| Mph1103I | ATGCAT | 3 cut(s) | 961, 1186, 1339 |
| MroXI | GAANNNNTTC | 2 cut(s) | 327, 1376 |
| MseI | TTAA | 2 cut(s) | 668, 2337 |
| MslI | CAYNNNNRTG | 7 cut(s) | 357, 930, 1053, 1185, 1212, 1478, 1581 |
| MspA1I | CMGCKG | 3 cut(s) | 230, 1538, 2156 |
| MspI | CCGG | 1 cut(s) | 1954 |
| MspR9I | CCNGG | 6 cut(s) | 756, 1268, 1865, 1954, 2010, 2223 |
| MunI | CAATTG | 1 cut(s) | 830 |
| Mva1269I | GAATGC | 6 cut(s) | 959, 1089, 1207, 1420, 1723, 1908 |
| MvaI | CCWGG | 5 cut(s) | 756, 1268, 1865, 2010, 2223 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 425, 457, 1280, 1443, 1532, 1547, 2150 |
| NciI | CCSGG | 1 cut(s) | 1954 |
| NdeI | CATATG | 1 cut(s) | 2125 |
| NdeII | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| NlaIV | GGNNCC | 6 cut(s) | 481, 898, 949, 1500, 2106, 2220 |
| NmeAIII | GCCGAG | 1 cut(s) | 1021 |
| NsiI | ATGCAT | 3 cut(s) | 961, 1186, 1339 |
| NspI | RCATGY | 2 cut(s) | 839, 1188 |
| NspV | TTCGAA | 2 cut(s) | 1094, 1211 |
| PagI | TCATGA | 1 cut(s) | 1054 |
| PceI | AGGCCT | 2 cut(s) | 408, 460 |
| PciSI | GCTCTTC | 1 cut(s) | 333 |
| PctI | GAATGC | 6 cut(s) | 959, 1089, 1207, 1420, 1723, 1908 |
| PdmI | GAANNNNTTC | 2 cut(s) | 327, 1376 |
| PfeI | GAWTC | 3 cut(s) | 77, 317, 431 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2015 |
| PkrI | GCNGC | 9 cut(s) | 157, 1034, 1047, 1537, 1540, 1552, 2083, 2155, 2228 |
| PleI | GAGTC | 1 cut(s) | 703 |
| PmaCI | CACGTG | 1 cut(s) | 800 |
| PmlI | CACGTG | 1 cut(s) | 800 |
| PpsI | GAGTC | 1 cut(s) | 703 |
| Ppu21I | YACGTR | 1 cut(s) | 800 |
| PshBI | ATTAAT | 1 cut(s) | 668 |
| Psp1406I | AACGTT | 1 cut(s) | 1235 |
| Psp6I | CCWGG | 5 cut(s) | 754, 1266, 1863, 2008, 2221 |
| PspCI | CACGTG | 1 cut(s) | 800 |
| PspFI | CCCAGC | 1 cut(s) | 1904 |
| PspGI | CCWGG | 5 cut(s) | 754, 1266, 1863, 2008, 2221 |
| PspN4I | GGNNCC | 6 cut(s) | 481, 898, 949, 1500, 2106, 2220 |
| PspPI | GGNCC | 1 cut(s) | 578 |
| PstI | CTGCAG | 1 cut(s) | 2231 |
| PsuI | RGATCY | 2 cut(s) | 1240, 2104 |
| PvuII | CAGCTG | 3 cut(s) | 230, 1538, 2156 |
| RsaI | GTAC | 2 cut(s) | 949, 1500 |
| RsaNI | GTAC | 2 cut(s) | 948, 1499 |
| RseI | CAYNNNNRTG | 7 cut(s) | 357, 930, 1053, 1185, 1212, 1478, 1581 |
| SapI | GCTCTTC | 1 cut(s) | 333 |
| SaqAI | TTAA | 2 cut(s) | 668, 2337 |
| SatI | GCNGC | 9 cut(s) | 156, 1033, 1046, 1536, 1539, 1551, 2082, 2154, 2227 |
| Sau3AI | GATC | 6 cut(s) | 19, 123, 232, 652, 1240, 2104 |
| Sau96I | GGNCC | 1 cut(s) | 578 |
| SchI | GAGTC | 1 cut(s) | 704 |
| ScrFI | CCNGG | 6 cut(s) | 756, 1268, 1865, 1954, 2010, 2223 |
| SduI | GDGCHC | 2 cut(s) | 901, 1926 |
| SexAI | ACCWGGT | 1 cut(s) | 2008 |
| SfaNI | GCATC | 6 cut(s) | 546, 844, 946, 1261, 1377, 1470 |
| SfcI | CTRYAG | 1 cut(s) | 2227 |
| SfuI | TTCGAA | 2 cut(s) | 1094, 1211 |
| SinI | GGWCC | 1 cut(s) | 578 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 357, 930, 1053, 1185, 1212, 1478, 1581 |
| SmlI | CTYRAG | 3 cut(s) | 468, 743, 1000 |
| SmoI | CTYRAG | 3 cut(s) | 468, 743, 1000 |
| SseBI | AGGCCT | 2 cut(s) | 408, 460 |
| SsiI | CCGC | 1 cut(s) | 2151 |
| SspI | AATATT | 2 cut(s) | 1099, 2094 |
| SspMI | CTAG | 4 cut(s) | 74, 522, 1556, 2085 |
| StuI | AGGCCT | 2 cut(s) | 408, 460 |
| StyD4I | CCNGG | 6 cut(s) | 754, 1266, 1863, 1952, 2008, 2221 |
| StyI | CCWWGG | 1 cut(s) | 403 |
| TaaI | ACNGT | 1 cut(s) | 1129 |
| TaiI | ACGT | 3 cut(s) | 802, 1022, 1238 |
| TaqI | TCGA | 6 cut(s) | 693, 698, 722, 984, 1094, 1211 |
| TfiI | GAWTC | 3 cut(s) | 77, 317, 431 |
| Tru1I | TTAA | 2 cut(s) | 668, 2337 |
| Tru9I | TTAA | 2 cut(s) | 668, 2337 |
| TscAI | CASTG | 1 cut(s) | 1132 |
| TseI | GCWGC | 9 cut(s) | 155, 1032, 1045, 1535, 1538, 1550, 2081, 2153, 2226 |
| TspRI | CASTG | 1 cut(s) | 1132 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2015 |
| VpaK11BI | GGWCC | 1 cut(s) | 578 |
| VspI | ATTAAT | 1 cut(s) | 668 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1346 |
| XapI | RAATTY | 3 cut(s) | 1112, 1592, 2319 |
| XceI | RCATGY | 2 cut(s) | 839, 1188 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2229 |
| XmnI | GAANNNNTTC | 2 cut(s) | 327, 1376 |
| XspI | CTAG | 4 cut(s) | 74, 522, 1556, 2085 |
| Zsp2I | ATGCAT | 3 cut(s) | 961, 1186, 1339 |