AT5G42760

Leucine carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016040
Physical Location & Seq
Forward (+)
17148808 .. 17150451
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42760.1

Sequence Viewer

Length: 1047 bp
ATGAGAGAAACAATGTCTGAAATAGAAAAGCAAAAGCCGGAAGAAGAAGAATCATCCACGACATGGCCGGATATCGAAGAAGAACTCGTGCTTCCCGATGTGTTACGTAGTGAAGGCGTGAAGAAACTGCATATGAGTATTCAAAGTGAGTGGGATTACCTTCAGAAGTCTGCTTGTCAAACAGCTGCAGGAAGAGCTTTGTGGAAACATGTTATTCATGATCCGCTTGCTCATTTGTTTGCTGGAGAGACACATTTGAGAAACCTACACACAAAGATTCAGACTGACCGTCTCAACAATGCTCGAGAGGTTTCTGGTGTGATCCTAGCCGTTCGAACTCTCTGGTTTGACACAAGGATTCAAGCTGCTCTGGAGTCTTTCCACGGCGATGCAGCACAGGTTGTTCTACTTGGTGCAGGAATGGATGCAAGATCATACAGACTAAACTGCTTGAACAAAAGTGACGTATTCGAAGTGGATTTTCAAGATGTTTTGGAAACCAAAGCGAGCCTAGTTCAAGCTGCAGTAAACTCTAGAGATGAGCTTAGGATGACAGCGAAATCACTAGTCAGAGTAGCAATTGATATCAGAGACAACGATTGGTTTGAACAGCTTAAAAAATCAGGTTTTTTGCCAGAGATTAACACGGTATGGGTTCTCGAAGGTATTCTCTATTACCTGTCTCACACAGAGGCAATGCAAGTACTAAACCTCATAGCTGAGAAGTGTGGACTAACCAGCACAGTTCTCTTGGCGGATTTCATGAACAAACCATCAGCTACACTTCCAAACTCTGTGTTCCACTTTTACAGTGACTGGCCTGATCAGCTCTTACCAACTTTGGGATTCTCTCATGTCAAGCTTTCACAAATAGGTGATCCAGATGCGAATTTCGGTCTGCTCCACGATCCACGGAATCTCTTCAACAAACTTCTCCGCCTGCCAAGGACTGCACAAATCCATCCAGATGATGGAAAACCATGCTGCCGTTTGTATTTGGTCGAAGCTTCCGGTTCACCGCCTCAAGATAACCAAGCGAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM

Protein Analysis

348

Amino Acids

39.3

Weight (kDa)

5.39

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LCM PF04072 58 - 239 1.4e-42 Leucine carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42760 AT5G42760
fragaria_vesca FvH4_2g39790
malus_domestica MD15G1027400.v1.1
prunus_persica Prupe.1G379200_v2.0.a1
pyrus_communis pycom15g02340
rosa_laevigata RLG00000011280
rosa_multiflora Rmu_sc0003168.1_g000012 Rmu_sc0035551.1_g000003
rosa_roxburghii Rroxscaffold_7G00167210
rosa_rugosa Rorug06G0300600
rosa_samantha Rh6AG414400 Rh6BG421300 Rh6CG428900 Rh6DG414300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 63, 971
AciI CCGC 4 cut(s) 224, 755, 937, 1019
AclWI GGATC 4 cut(s) 215, 316, 872, 902
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 889
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 3 cut(s) 63, 842, 971
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 7 cut(s) 143, 362, 454, 485, 518, 608, 925
AhdI GACNNNNNGTC 1 cut(s) 288
AhlI ACTAGT 1 cut(s) 565
Alw26I GTCTC 4 cut(s) 242, 296, 585, 687
AlwI GGATC 4 cut(s) 215, 316, 872, 902
AlwNI CAGNNNCTG 1 cut(s) 816
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 2 cut(s) 65, 818
ApeKI GCWGC 5 cut(s) 185, 365, 392, 521, 984
ApoI RAATTY 1 cut(s) 889
Asp700I GAANNNNTTC 2 cut(s) 666, 920
AsuHPI GGTGA 2 cut(s) 887, 1008
AsuII TTCGAA 2 cut(s) 334, 471
AvaI CYCGRG 1 cut(s) 303
BauI CACGAG 1 cut(s) 86
BbvI GCAGC 5 cut(s) 172, 352, 404, 508, 971
BccI CCATC 3 cut(s) 781, 965, 969
BceAI ACGGC 3 cut(s) 314, 400, 972
BclI TGATCA 1 cut(s) 823
BcoDI GTCTC 4 cut(s) 242, 296, 585, 687
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 4 cut(s) 326, 512, 534, 566
BfmI CTRYAG 2 cut(s) 186, 522
BisI GCNGC 5 cut(s) 186, 366, 393, 522, 985
BlsI GCNGC 5 cut(s) 187, 367, 394, 523, 986
BmcAI AGTACT 1 cut(s) 705
BmeRI GACNNNNNGTC 1 cut(s) 288
BmeT110I CYCGRG 1 cut(s) 303
BmsI GCATC 3 cut(s) 379, 415, 874
BpmI CTGGAG 2 cut(s) 264, 392
Bpu10I CCTNAGC 1 cut(s) 545
Bpu14I TTCGAA 2 cut(s) 334, 471
BpuEI CTTGAG 1 cut(s) 1008
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 382, 911, 944
BsaWI WCCGGW 1 cut(s) 1010
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 842, 971
Bse1I ACTGG 1 cut(s) 821
Bse3DI GCAATG 1 cut(s) 702
BseDI CCNNGG 3 cut(s) 382, 911, 944
BseGI GGATG 4 cut(s) 53, 430, 555, 961
BseLI CCNNNNNNNGG 3 cut(s) 63, 842, 971
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 1 cut(s) 821
BseXI GCAGC 5 cut(s) 172, 352, 404, 508, 971
BsgI GTGCAG 2 cut(s) 435, 936
BshFI GGCC 2 cut(s) 67, 820
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 3 cut(s) 38, 68, 1011
BslI CCNNNNNNNGG 3 cut(s) 63, 842, 971
BsmAI GTCTC 4 cut(s) 242, 296, 585, 687
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 2 cut(s) 67, 820
BsoBI CYCGRG 1 cut(s) 303
Bsp119I TTCGAA 2 cut(s) 334, 471
Bsp143I GATC 6 cut(s) 220, 321, 431, 823, 877, 907
BspACI CCGC 4 cut(s) 224, 755, 937, 1019
BspANI GGCC 2 cut(s) 67, 820
BspCNI CTCAG 1 cut(s) 712
BspHI TCATGA 2 cut(s) 217, 762
BspMAI CTGCAG 2 cut(s) 190, 526
BspPI GGATC 4 cut(s) 215, 316, 872, 902
BspQI GCTCTTC 1 cut(s) 187
BspT104I TTCGAA 2 cut(s) 334, 471
BsrDI GCAATG 1 cut(s) 702
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 3 cut(s) 382, 911, 944
BssMI GATC 6 cut(s) 220, 321, 431, 823, 877, 907
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 290, 649, 745, 812
Bst6I CTCTTC 2 cut(s) 187, 926
BstBAI YACGTR 1 cut(s) 107
BstBI TTCGAA 2 cut(s) 334, 471
BstC8I GCNNGC 4 cut(s) 228, 508, 941, 1039
BstDEI CTNAG 2 cut(s) 545, 720
BstDSI CCRYGG 2 cut(s) 382, 911
BstF5I GGATG 4 cut(s) 53, 430, 555, 961
BstKTI GATC 6 cut(s) 223, 324, 434, 826, 880, 910
BstMAI GTCTC 4 cut(s) 242, 296, 585, 687
BstMBI GATC 6 cut(s) 220, 321, 431, 823, 877, 907
BstMWI GCNNNNNNNGC 2 cut(s) 194, 826
BstNSI RCATGY 1 cut(s) 212
BstSFI CTRYAG 2 cut(s) 186, 522
BstSNI TACGTA 1 cut(s) 107
BstV1I GCAGC 5 cut(s) 172, 352, 404, 508, 971
BsuRI GGCC 2 cut(s) 67, 820
BtgI CCRYGG 2 cut(s) 382, 911
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 4 cut(s) 53, 430, 555, 961
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 4 cut(s) 228, 508, 941, 1039
CaiI CAGNNNCTG 1 cut(s) 816
CciI TCATGA 2 cut(s) 217, 762
Csp6I GTAC 1 cut(s) 704
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 6 cut(s) 63, 209, 218, 763, 854, 981
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 2 cut(s) 545, 720
DpnI GATC 6 cut(s) 222, 323, 433, 825, 879, 909
DpnII GATC 6 cut(s) 220, 321, 431, 823, 877, 907
DriI GACNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 187, 926
Eam1105I GACNNNNNGTC 1 cut(s) 288
EarI CTCTTC 2 cut(s) 187, 926
EciI GGCGGA 2 cut(s) 770, 926
Eco105I TACGTA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 944
Eco32I GATATC 2 cut(s) 73, 586
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 303
EcoRV GATATC 2 cut(s) 73, 586
EcoT14I CCWWGG 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 944
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 6 cut(s) 66, 212, 221, 766, 857, 984
FatI CATG 6 cut(s) 62, 208, 217, 762, 853, 980
FauNDI CATATG 1 cut(s) 132
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 5 cut(s) 186, 366, 393, 522, 985
FokI GGATG 4 cut(s) 40, 437, 562, 948
Fsp4HI GCNGC 5 cut(s) 186, 366, 393, 522, 985
FspBI CTAG 4 cut(s) 326, 512, 534, 566
GluI GCNGC 5 cut(s) 186, 366, 393, 522, 985
GsuI CTGGAG 2 cut(s) 264, 392
HaeIII GGCC 2 cut(s) 67, 820
HapII CCGG 3 cut(s) 38, 68, 1011
Hin1II CATG 6 cut(s) 66, 212, 221, 766, 857, 984
HindIII AAGCTT 2 cut(s) 860, 1005
HinfI GANTC 6 cut(s) 50, 277, 358, 374, 846, 916
HpaII CCGG 3 cut(s) 38, 68, 1011
HphI GGTGA 2 cut(s) 887, 1008
Hpy166II GTNNAC 3 cut(s) 529, 731, 1016
Hpy188I TCNGA 5 cut(s) 19, 165, 282, 572, 590
Hpy8I GTNNAC 3 cut(s) 529, 731, 1016
HpyAV CCTTC 3 cut(s) 107, 170, 656
HpyCH4III ACNGT 4 cut(s) 290, 649, 745, 812
HpyCH4IV ACGT 2 cut(s) 106, 465
HpyCH4V TGCA 8 cut(s) 130, 188, 392, 416, 428, 524, 700, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 826
HpyF3I CTNAG 2 cut(s) 545, 720
HpySE526I ACGT 2 cut(s) 106, 465
Hsp92II CATG 6 cut(s) 66, 212, 221, 766, 857, 984
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 6 cut(s) 220, 321, 431, 823, 877, 907
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 906
Lsp1109I GCAGC 5 cut(s) 172, 352, 404, 508, 971
LweI GCATC 3 cut(s) 379, 415, 874
MaeI CTAG 4 cut(s) 326, 512, 534, 566
MaeII ACGT 2 cut(s) 106, 465
MaeIII GTNAC 3 cut(s) 102, 461, 812
MalI GATC 6 cut(s) 222, 323, 433, 825, 879, 909
MboI GATC 6 cut(s) 220, 321, 431, 823, 877, 907
MboII GAAGA 8 cut(s) 53, 56, 59, 89, 92, 133, 204, 913
MfeI CAATTG 1 cut(s) 579
MluCI AATT 2 cut(s) 579, 889
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 301, 685, 722, 1032
MroXI GAANNNNTTC 2 cut(s) 666, 920
MseI TTAA 2 cut(s) 615, 642
MslI CAYNNNNRTG 2 cut(s) 387, 966
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 3 cut(s) 38, 68, 1011
MunI CAATTG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 194, 826
NdeI CATATG 1 cut(s) 132
NdeII GATC 6 cut(s) 220, 321, 431, 823, 877, 907
NlaIII CATG 6 cut(s) 66, 212, 221, 766, 857, 984
NmuCI GTSAC 2 cut(s) 461, 812
NspI RCATGY 1 cut(s) 212
NspV TTCGAA 2 cut(s) 334, 471
PaeR7I CTCGAG 1 cut(s) 303
PagI TCATGA 2 cut(s) 217, 762
PciI ACATGT 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 2 cut(s) 666, 920
PfeI GAWTC 5 cut(s) 50, 277, 358, 846, 916
PflMI CCANNNNNTGG 2 cut(s) 63, 971
PkrI GCNGC 5 cut(s) 187, 367, 394, 523, 986
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Ppu21I YACGTR 1 cut(s) 107
PscI ACATGT 1 cut(s) 208
PstI CTGCAG 2 cut(s) 190, 526
PstNI CAGNNNCTG 1 cut(s) 816
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
RseI CAYNNNNRTG 2 cut(s) 387, 966
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 615, 642
SatI GCNGC 5 cut(s) 186, 366, 393, 522, 985
Sau3AI GATC 6 cut(s) 220, 321, 431, 823, 877, 907
ScaI AGTACT 1 cut(s) 705
SchI GAGTC 1 cut(s) 383
SfaNI GCATC 3 cut(s) 379, 415, 874
SfcI CTRYAG 2 cut(s) 186, 522
Sfr274I CTCGAG 1 cut(s) 303
SfuI TTCGAA 2 cut(s) 334, 471
SlaI CTCGAG 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 387, 966
SmlI CTYRAG 2 cut(s) 303, 1023
SmoI CTYRAG 2 cut(s) 303, 1023
SnaBI TACGTA 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 565
Sse9I AATT 2 cut(s) 579, 889
SsiI CCGC 4 cut(s) 224, 755, 937, 1019
SspMI CTAG 4 cut(s) 326, 512, 534, 566
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 4 cut(s) 290, 649, 745, 812
TaiI ACGT 2 cut(s) 109, 468
TaqI TCGA 6 cut(s) 75, 304, 334, 471, 660, 1002
TaqII GACCGA 1 cut(s) 884
TasI AATT 2 cut(s) 579, 889
TatI WGTACW 1 cut(s) 703
TfiI GAWTC 5 cut(s) 50, 277, 358, 846, 916
Tru1I TTAA 2 cut(s) 615, 642
Tru9I TTAA 2 cut(s) 615, 642
TscAI CASTG 1 cut(s) 817
TseFI GTSAC 2 cut(s) 461, 812
TseI GCWGC 5 cut(s) 185, 365, 392, 521, 984
Tsp45I GTSAC 2 cut(s) 461, 812
TspDTI ATGAA 3 cut(s) 206, 751, 779
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 1 cut(s) 817
Van91I CCANNNNNTGG 2 cut(s) 63, 971
XapI RAATTY 1 cut(s) 889
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 968
XhoI CTCGAG 1 cut(s) 303
XmnI GAANNNNTTC 2 cut(s) 666, 920
XspI CTAG 4 cut(s) 326, 512, 534, 566
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.