MD15G1027400.v1.1

Leucine carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016040
Physical Location & Seq
Reverse (-)
1621251 .. 1621566
316 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1027400.v1.1.491

Sequence Viewer

Length: 276 bp
ATGAACAAACCATCAATCAGTCTTTCCAATTCCATCTTCCATTTCTATAGCGATTGGCCTGATCATCTGCTGCCATCTCTTGGCTTTTCTCATGTTAAACTATCACAAATTGGTGATCCAGATGCTCATTTTGGACTCATGCACGATCCCTCAAATCTGTTCAACAAGCTTCGCAGCTTGCCTAGGTCAGTACATACCCACCCAGATGATGGAACGCCATGCTGTCGCTTGTATTTGGTTGAGGCTTCTGGTTCACCGAATCAAACTATTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LCM

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

6.34

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42760 AT5G42760
fragaria_vesca FvH4_2g39790
malus_domestica MD15G1027400.v1.1
prunus_persica Prupe.1G379200_v2.0.a1
pyrus_communis pycom15g02340
rosa_laevigata RLG00000011280
rosa_multiflora Rmu_sc0003168.1_g000012 Rmu_sc0035551.1_g000003
rosa_roxburghii Rroxscaffold_7G00167210
rosa_rugosa Rorug06G0300600
rosa_samantha Rh6AG414400 Rh6BG421300 Rh6CG428900 Rh6DG414300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 80, 209
AclWI GGATC 2 cut(s) 110, 140
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 80, 209
AgsI TTSAA 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 2 cut(s) 169, 177
AluI AGCT 2 cut(s) 169, 177
AlwI GGATC 2 cut(s) 110, 140
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 70, 174
AspA2I CCTAGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 125, 246
AvrII CCTAGG 1 cut(s) 182
BbvI GCAGC 2 cut(s) 57, 186
BccI CCATC 4 cut(s) 19, 41, 82, 203
BclI TGATCA 1 cut(s) 61
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 46
BisI GCNGC 2 cut(s) 71, 175
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 2 cut(s) 72, 176
BmsI GCATC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 209
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 80, 209
BseXI GCAGC 2 cut(s) 57, 186
BshFI GGCC 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 80, 209
BsnI GGCC 1 cut(s) 58
Bsp143I GATC 3 cut(s) 61, 115, 145
BspANI GGCC 1 cut(s) 58
BspPI GGATC 2 cut(s) 110, 140
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 61, 115, 145
BssT1I CCWWGG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 179
BstKTI GATC 3 cut(s) 64, 118, 148
BstMBI GATC 3 cut(s) 61, 115, 145
BstSFI CTRYAG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 57, 186
BsuRI GGCC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 191
CviAII CATG 3 cut(s) 92, 139, 219
CviJI RGCY 5 cut(s) 58, 84, 169, 177, 245
CviKI_1 RGCY 5 cut(s) 58, 84, 169, 177, 245
CviQI GTAC 1 cut(s) 191
DpnI GATC 3 cut(s) 63, 117, 147
DpnII GATC 3 cut(s) 61, 115, 145
Eco130I CCWWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 3 cut(s) 95, 142, 222
FaiI YATR 6 cut(s) 48, 93, 140, 195, 220, 274
FatI CATG 3 cut(s) 91, 138, 218
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 2 cut(s) 71, 175
Fsp4HI GCNGC 2 cut(s) 71, 175
FspBI CTAG 1 cut(s) 183
GluI GCNGC 2 cut(s) 71, 175
HaeIII GGCC 1 cut(s) 58
Hin1II CATG 3 cut(s) 95, 142, 222
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 2 cut(s) 135, 259
HphI GGTGA 2 cut(s) 125, 246
Hpy166II GTNNAC 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 142
Hsp92II CATG 3 cut(s) 95, 142, 222
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 115, 145
LpnPI CCDG 4 cut(s) 72, 132, 216, 234
Lsp1109I GCAGC 2 cut(s) 57, 186
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 183
MalI GATC 3 cut(s) 63, 117, 147
MboI GATC 3 cut(s) 61, 115, 145
MboII GAAGA 1 cut(s) 28
MluCI AATT 2 cut(s) 28, 108
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 2 cut(s) 160, 235
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 204
NdeII GATC 3 cut(s) 61, 115, 145
NlaIII CATG 3 cut(s) 95, 142, 222
PfeI GAWTC 1 cut(s) 259
PflMI CCANNNNNTGG 2 cut(s) 80, 209
PkrI GCNGC 2 cut(s) 72, 176
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 71, 175
Sau3AI GATC 3 cut(s) 61, 115, 145
SchI GAGTC 1 cut(s) 129
SetI ASST 3 cut(s) 171, 179, 188
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 2 cut(s) 28, 108
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 182
TasI AATT 2 cut(s) 28, 108
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 2 cut(s) 70, 174
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 2 cut(s) 80, 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmaJI CCTAGG 1 cut(s) 182
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.