AT5G42850

Thioredoxin-like protein Clot

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013216
Physical Location & Seq
Reverse (-)
17181412 .. 17182743
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42850.1

Sequence Viewer

Length: 405 bp
ATGACGTTGAAGAAGGTGGACGCGAATCCATCAACCTTGGAATCGAGTTTACAAGAACTGAAATCAGACGAAACAAGCCGTAGCAAGATCAATTTCATACTCTTCCTCGCCGACAATGATCCCACCACCGGTCAAAGCTGGTGTCCAGACTGTGTTAGAGCTGAACCTGTGATTTACAAGACTCTAGAGGAATTTCCAGAGGAGGTGAAGCTAATTCGTGCTTACGCCGGAGACAGACCGACGTGGCGGACTCCGGCGCATCCTTGGAGAGTTGATTCTCGGTTTAAACTAACCGGAGTACCAACTCTTGTTCGTTGGGATGGTGACTCTGTTAAAGGACGTCTTGAAGATCATCAAGCTCACCTTCCTCACTTGATTCTTCCCCTTCTTGCACCATCCACTTGA

Protein Analysis

134

Amino Acids

15.21

Weight (kDa)

6.07

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TXD17-like_Trx PF06110 14 - 131 1.5e-45 Thioredoxin domain-containing protein 17-like, thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42850 AT5G42850
fragaria_vesca FvH4_7g00510
malus_domestica MD07G1004900.v1.1
prunus_persica Prupe.2G007200_v2.0.a1 Prupe.2G007200_v2.0.a1
pyrus_communis pycom07g00400
rosa_chinensis RchiOBHm_Chr1g0314301
rosa_laevigata RLG00000030768
rosa_multiflora Rmu_sc0000343.1_g000014 Rmu_sc0002833.1_g000004
rosa_roxburghii Rroxscaffold_4G00331980
rosa_rugosa Rorug01G0000800
rosa_samantha Rh1AG009900 Rh1BG002800 Rh1CG010200 Rh1DG005300
rosa_wichuraiana Rw1G000440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 343
AccII CGCG 1 cut(s) 23
AciI CCGC 1 cut(s) 247
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 128
AgeI ACCGGT 1 cut(s) 128
AgsI TTSAA 2 cut(s) 10, 347
AjiI CACGTC 1 cut(s) 243
AluBI AGCT 4 cut(s) 138, 161, 211, 359
AluI AGCT 4 cut(s) 138, 161, 211, 359
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AsiGI ACCGGT 1 cut(s) 128
AspLEI GCGC 1 cut(s) 259
AsuHPI GGTGA 3 cut(s) 217, 335, 353
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BccI CCATC 3 cut(s) 37, 314, 403
BceAI ACGGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 243
BmsI GCATC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 36, 263
BsaWI WCCGGW 2 cut(s) 128, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 36, 263
BseGI GGATG 3 cut(s) 259, 325, 395
BseLI CCNNNNNNNGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 128
BsiSI CCGG 4 cut(s) 129, 228, 254, 294
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 87, 118, 349
BspACI CCGC 1 cut(s) 247
BspFNI CGCG 1 cut(s) 23
BspPI GGATC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 36, 263
BssMI GATC 3 cut(s) 87, 118, 349
BssNI GRCGYC 1 cut(s) 340
BssT1I CCWWGG 2 cut(s) 36, 263
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 340
BstF5I GGATG 3 cut(s) 259, 325, 395
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 90, 121, 352
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 87, 118, 349
BstUI CGCG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 3 cut(s) 259, 325, 395
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 128
CseI GACGC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 299
CspAI ACCGGT 1 cut(s) 128
CviJI RGCY 5 cut(s) 78, 138, 161, 211, 359
CviKI_1 RGCY 5 cut(s) 78, 138, 161, 211, 359
CviQI GTAC 1 cut(s) 299
DpnI GATC 3 cut(s) 89, 120, 351
DpnII GATC 3 cut(s) 87, 118, 349
DraI TTTAAA 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 1 cut(s) 262
Eco130I CCWWGG 2 cut(s) 36, 263
EcoT14I CCWWGG 2 cut(s) 36, 263
ErhI CCWWGG 2 cut(s) 36, 263
FaiI YATR 1 cut(s) 98
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 348, 380
FokI GGATG 3 cut(s) 246, 332, 382
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 258
HapII CCGG 4 cut(s) 129, 228, 254, 294
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 7 cut(s) 25, 41, 181, 250, 275, 326, 376
HpaII CCGG 4 cut(s) 129, 228, 254, 294
HphI GGTGA 3 cut(s) 217, 335, 353
Hpy166II GTNNAC 2 cut(s) 19, 50
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 4 cut(s) 146, 185, 197, 344
Hpy8I GTNNAC 2 cut(s) 19, 50
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 7, 374, 395
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 3 cut(s) 5, 242, 340
HpyCH4V TGCA 1 cut(s) 392
HpySE526I ACGT 3 cut(s) 5, 242, 340
Hsp92I GRCGYC 1 cut(s) 340
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 87, 118, 349
LpnPI CCDG 8 cut(s) 124, 142, 159, 180, 210, 241, 267, 307
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 185
MaeII ACGT 3 cut(s) 5, 242, 340
MaeIII GTNAC 1 cut(s) 323
MalI GATC 3 cut(s) 89, 120, 351
MboI GATC 3 cut(s) 87, 118, 349
MboII GAAGA 4 cut(s) 22, 94, 359, 371
MluCI AATT 3 cut(s) 91, 191, 213
MlyI GAGTC 3 cut(s) 175, 244, 320
MnlI CCTC 5 cut(s) 116, 181, 193, 196, 378
MseI TTAA 2 cut(s) 285, 333
MspI CCGG 4 cut(s) 129, 228, 254, 294
MssI GTTTAAAC 1 cut(s) 286
MvnI CGCG 1 cut(s) 23
NdeII GATC 3 cut(s) 87, 118, 349
NmuCI GTSAC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 25, 41, 275, 376
PinAI ACCGGT 1 cut(s) 128
PleI GAGTC 3 cut(s) 175, 244, 320
PmeI GTTTAAAC 1 cut(s) 286
PpsI GAGTC 3 cut(s) 175, 244, 320
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 285, 333
Sau3AI GATC 3 cut(s) 87, 118, 349
SchI GAGTC 3 cut(s) 175, 244, 320
SfaNI GCATC 1 cut(s) 268
Sse9I AATT 3 cut(s) 91, 191, 213
SsiI CCGC 1 cut(s) 247
SspMI CTAG 1 cut(s) 185
StyI CCWWGG 2 cut(s) 36, 263
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 3 cut(s) 8, 245, 343
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 253
TasI AATT 3 cut(s) 91, 191, 213
TfiI GAWTC 4 cut(s) 25, 41, 275, 376
Tru1I TTAA 2 cut(s) 285, 333
Tru9I TTAA 2 cut(s) 285, 333
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 85
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 184
XspI CTAG 1 cut(s) 185
ZraI GACGTC 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.