Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0013216

Physical Location & Seq

Genomic Coordinates Forward (+)

888186 .. 889734

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTCTGACGGTGTTGGACGCGAATATCTCCAGCTTCGACAGCGTGTTTGAGAAATTCAGAGCAGAAGCGCCAAAGAATAAGGCCAATCTCATCCTCTTCTTGGCTGACAAAGACCCTGCCACTTCTCTCAGTTGGTGTCCAGATTGTGTGAGAGCCGAACCTGTAATCTACAAAAAGCTGGAAGCTGCACCCGGTGATGTCGCACTTCTGAGAGCATATGTTGGAGATAGACCAACATGGAGGACTCCTCAACACCCATGGAGAGTGGACTCAAGGTTTAAGATTACTGGAGTTCCAACACTCGTCCGCTGGGAAAATGATGCTGTCAAGGGTCGCCTTGAAGACTATGAAGCGCATGTTGAAAAGAAGATCGACACACTTGTTTCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009987 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

132

Amino Acids

14.9

Weight (kDa)

6.73

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TXD17-like_Trx	PF06110	13 - 128	8.9e-37	Thioredoxin domain-containing protein 17-like, thioredoxin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42850 AT5G42850
fragaria_vesca	FvH4_7g00510
malus_domestica	MD07G1004900.v1.1
prunus_persica	Prupe.2G007200_v2.0.a1 Prupe.2G007200_v2.0.a1
pyrus_communis	pycom07g00400
rosa_chinensis	RchiOBHm_Chr1g0314301
rosa_laevigata	RLG00000030768
rosa_multiflora	Rmu_sc0000343.1_g000014 Rmu_sc0002833.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331980
rosa_rugosa	Rorug01G0000800
rosa_samantha	Rh1AG009900 Rh1BG002800 Rh1CG010200 Rh1DG005300
rosa_wichuraiana	Rw1G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	344, 365
AluBI	AGCT	3 cut(s)	36, 181, 188
AluI	AGCT	3 cut(s)	36, 181, 188
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	2 cut(s)	73, 358
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	74
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	235, 267
BpmI	CTGGAG	2 cut(s)	16, 312
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	145, 203
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	372
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	144, 204
BspFNI	CGCG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	131, 212
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	2 cut(s)	73, 358
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	93
CfoI	GCGC	2 cut(s)	73, 358
CseI	GACGC	1 cut(s)	29
CviAII	CATG	3 cut(s)	240, 261, 359
CviJI	RGCY	6 cut(s)	36, 86, 107, 158, 181, 188
CviKI_1	RGCY	6 cut(s)	36, 86, 107, 158, 181, 188
DdeI	CTNAG	2 cut(s)	131, 212
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	243, 264, 362
FaiI	YATR	6 cut(s)	220, 222, 241, 262, 351, 360
FatI	CATG	3 cut(s)	239, 260, 358
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	2 cut(s)	72, 357
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	2 cut(s)	16, 312
HaeII	RGCGCY	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	73, 358
Hin1II	CATG	3 cut(s)	243, 264, 362
Hin6I	GCGC	2 cut(s)	71, 356
HinP1I	GCGC	2 cut(s)	71, 356
HinfI	GANTC	2 cut(s)	247, 272
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	9, 62, 213
Hpy188III	TCNNGA	2 cut(s)	143, 390
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	131, 212
Hsp92II	CATG	3 cut(s)	243, 264, 362
HspAI	GCGC	2 cut(s)	71, 356
Kzo9I	GATC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	46, 132, 156, 167, 177, 208, 276, 298, 375
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	313
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	3 cut(s)	91, 356, 382
MluCI	AATT	2 cut(s)	56, 394
MlyI	GAGTC	2 cut(s)	241, 266
MmeI	TCCRAC	2 cut(s)	205, 323
MnlI	CCTC	4 cut(s)	15, 107, 237, 261
MseI	TTAA	2 cut(s)	282, 397
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	195
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	3 cut(s)	243, 264, 362
NspI	RCATGY	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	241, 266
PpsI	GAGTC	2 cut(s)	241, 266
PspFI	CCCAGC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	282, 397
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	372
SchI	GAGTC	2 cut(s)	241, 266
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	5 cut(s)	38, 166, 183, 190, 281
SfaNI	GCATC	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	56, 394
SsiI	CCGC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	39, 375
TasI	AATT	2 cut(s)	56, 394
Tru1I	TTAA	2 cut(s)	282, 397
Tru9I	TTAA	2 cut(s)	282, 397
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	366
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.