Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013216

Physical Location & Seq

Genomic Coordinates Forward (+)

531851 .. 534121

Gene Structure 2271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1004900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTCTCAAGATATCCGACGCCACCATCTCCACCTTCGACAGTGCGTTTGAGAAATTCAAAGCAGAAGCTCCAAACAACAAAGCCAATTTCATCCTCTTCCTGGCTGACAAGGACCCTTCTACCTCTCTCAGCTGGTGTCCTGATTGTGTGAGAGCTGAACCTGTAATCTACAAAAAGCTAGAAGCTACACCAGATGATGTTGCACTTTTGAGAGCATATGTCGGAGATAGGCCAACATGGAGGAATGCACATCACCCATGGAGAGTAGACTCAAGGTTTAAGCTGACCGGAGTTCCAACACTAATCCGCTGGGAAAATGATGCGATCAAGGGTCGGCTCGAAGACCATGAAGCGCATGTTGAAAACAAAATCAATGCGCTTCTTGCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009987 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

133

Amino Acids

14.93

Weight (kDa)

6.41

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TXD17-like_Trx	PF06110	13 - 129	1.7e-37	Thioredoxin domain-containing protein 17-like, thioredoxin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42850 AT5G42850
fragaria_vesca	FvH4_7g00510
malus_domestica	MD07G1004900.v1.1
prunus_persica	Prupe.2G007200_v2.0.a1 Prupe.2G007200_v2.0.a1
pyrus_communis	pycom07g00400
rosa_chinensis	RchiOBHm_Chr1g0314301
rosa_laevigata	RLG00000030768
rosa_multiflora	Rmu_sc0000343.1_g000014 Rmu_sc0002833.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331980
rosa_rugosa	Rorug01G0000800
rosa_samantha	Rh1AG009900 Rh1BG002800 Rh1CG010200 Rh1DG005300
rosa_wichuraiana	Rw1G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	61, 365
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	6 cut(s)	71, 135, 158, 181, 188, 286
AluI	AGCT	6 cut(s)	71, 135, 158, 181, 188, 286
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	2 cut(s)	358, 382
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	351
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	358, 382
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	49
CfoI	GCGC	2 cut(s)	358, 382
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	29
CviAII	CATG	4 cut(s)	240, 261, 350, 359
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	243, 264, 353, 362
FaiI	YATR	6 cut(s)	220, 222, 241, 262, 351, 360
FatI	CATG	4 cut(s)	239, 260, 349, 358
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	270
FokI	GGATG	1 cut(s)	80
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	357, 381
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	2 cut(s)	358, 382
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	243, 264, 353, 362
Hin6I	GCGC	2 cut(s)	356, 380
HinP1I	GCGC	2 cut(s)	356, 380
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	19, 227
Hpy188III	TCNNGA	2 cut(s)	10, 143
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	46, 129
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	206, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	243, 264, 353, 362
HspAI	GCGC	2 cut(s)	356, 380
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	9 cut(s)	89, 116, 121, 156, 177, 207, 298, 304, 375
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	182
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	91, 356
MluCI	AATT	3 cut(s)	56, 88, 394
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	3 cut(s)	42, 205, 323
MnlI	CCTC	4 cut(s)	15, 107, 136, 237
MseI	TTAA	2 cut(s)	282, 397
MspA1I	CMGCKG	2 cut(s)	135, 312
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	4 cut(s)	243, 264, 353, 362
NlaIV	GGNNCC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	362
PctI	GAATGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	282, 397
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	8, 274
SmoI	CTYRAG	2 cut(s)	8, 274
Sse9I	AATT	3 cut(s)	56, 88, 394
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	39, 342
TasI	AATT	3 cut(s)	56, 88, 394
Tru1I	TTAA	2 cut(s)	282, 397
Tru9I	TTAA	2 cut(s)	282, 397
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	82, 366
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.