Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013216

Physical Location & Seq

Genomic Coordinates Forward (+)

680462 .. 682575

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCCTCTCAAGCTGCTGGACGCCACCATCTCCACCTTTGACAGTGTGTTCGAGAAATTCAGAGCAGAAGCCCCAAAGAACAAAGCCAATCTCATCCTCTTCTTGGCTGACAAAGACCCTTCTACCTCTCTCAGCTGGTGCCCTGATTGTGTGAGAGCAGAACCTGTAATCTACAAAAAGCTGGAAGCTACAGCTGATGATGTTGCACTTCTGAGAGCATATGTCGGAGACAGACCAACATGGAGGAATCCGGTGCACCCATGGAGAGTAGACTCAAGGTTTAAGCTGACTGGAGTTCCAACACTATTCCGCTGGGAAAATGATGCGATCAAGGGTCGCCTTGAAGACCATGAAGCGCATGTCGAAAGCAAAATCGATGCACTTGTTGCTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0009987 GO:0015036 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF953

Protein Analysis

133

Amino Acids

14.95

Weight (kDa)

6.29

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42850 AT5G42850
fragaria_vesca	FvH4_7g00510
malus_domestica	MD07G1004900.v1.1
prunus_persica	Prupe.2G007200_v2.0.a1 Prupe.2G007200_v2.0.a1
pyrus_communis	pycom07g00400
rosa_chinensis	RchiOBHm_Chr1g0314301
rosa_laevigata	RLG00000030768
rosa_multiflora	Rmu_sc0000343.1_g000014 Rmu_sc0002833.1_g000004
rosa_roxburghii	Rroxscaffold_4G00331980
rosa_rugosa	Rorug01G0000800
rosa_samantha	Rh1AG009900 Rh1BG002800 Rh1CG010200 Rh1DG005300
rosa_wichuraiana	Rw1G000440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	6 cut(s)	13, 135, 181, 188, 194, 286
AluI	AGCT	6 cut(s)	13, 135, 181, 188, 194, 286
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	222
Alw44I	GTGCAC	1 cut(s)	254
AlwNI	CAGNNNCTG	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AspLEI	GCGC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	143, 258
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	258
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	140
BmsI	GCATC	2 cut(s)	313, 367
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	259
Bsa29I	ATCGAT	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	2 cut(s)	145, 203
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	2 cut(s)	143, 258
BseYI	CCCAGC	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	143, 258
Bsp143I	GATC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	144, 204
BspDI	ATCGAT	1 cut(s)	375
BspLI	GGNNCC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	131, 212
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 386
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	2 cut(s)	143, 258
BstV2I	GAAGAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	29
CviAII	CATG	4 cut(s)	240, 261, 350, 359
CviJI	RGCY	9 cut(s)	13, 71, 86, 107, 135, 181, 188, 194, 286
CviKI_1	RGCY	9 cut(s)	13, 71, 86, 107, 135, 181, 188, 194, 286
DdeI	CTNAG	2 cut(s)	131, 212
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	4 cut(s)	243, 264, 353, 362
FaiI	YATR	6 cut(s)	220, 222, 241, 262, 351, 360
FatI	CATG	4 cut(s)	239, 260, 349, 358
FauNDI	CATATG	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	14
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	14
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	312
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	243, 264, 353, 362
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	247, 272
HpaII	CCGG	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	256, 271
Hpy188I	TCNGA	3 cut(s)	62, 213, 227
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	256, 271
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	3 cut(s)	206, 256, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 386
HpyF3I	CTNAG	2 cut(s)	131, 212
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	243, 264, 353, 362
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	1 cut(s)	327
LpnPI	CCDG	9 cut(s)	2, 121, 156, 167, 177, 264, 276, 298, 375
LweI	GCATC	2 cut(s)	313, 367
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	91, 356
MhlI	GDGCHC	2 cut(s)	143, 258
MluCI	AATT	2 cut(s)	56, 394
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	2 cut(s)	205, 323
MnlI	CCTC	4 cut(s)	15, 107, 136, 237
MseI	TTAA	2 cut(s)	282, 397
MspA1I	CMGCKG	3 cut(s)	135, 194, 312
MspI	CCGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	10, 386
NcoI	CCATGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	4 cut(s)	243, 264, 353, 362
NlaIV	GGNNCC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	164
PvuII	CAGCTG	2 cut(s)	135, 194
SaqAI	TTAA	2 cut(s)	282, 397
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	143, 258
SfaNI	GCATC	2 cut(s)	313, 367
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	8, 274
SmoI	CTYRAG	2 cut(s)	8, 274
Sse9I	AATT	2 cut(s)	56, 394
SsiI	CCGC	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	51, 363, 375
TasI	AATT	2 cut(s)	56, 394
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	2 cut(s)	282, 397
Tru9I	TTAA	2 cut(s)	282, 397
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.