Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014076

Physical Location & Seq

Genomic Coordinates Reverse (-)

17627132 .. 17629363

Gene Structure 2232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCTCGAGGCATGGTTTATGGATGATAGCAATGAGGACCAGAGACTTCCTCATCATCGTAACCCGAAAGAACTCGTCTCGTTGGATTACTTGGCAGAGTTGGGAGTGTTGTACTGGAAGTTGAACCCTGAGAACTACGAGAATGATTCTGAACTTAGCAAGATTAGAGAAGACAGGGGTTACGATTACATGGATTTGCTGGATCTGTGTCCCGAGAAAGTCAGCAACTACGAAGAAAAGCTGAAGAACTTTTTCACAGAACACATTCACAAGGACGAAGAGATTCGGTACTGCCTAGCAGGAAGTGGCTACTTTGATGTTAGGGACAAGGATGATCGTTGGATCCGTATCTGGATGCAACCTGGCGATCTCATTGTCCTTCCTGCCGGAATCTACCACCGGTTCACACTCGACGCCAGCAACTACATCAAGCTAATGAGGCTGTTCGTGGGGGAACCGGTTTGGACACCATATAACCGGCCACAGGAAGAACATCCTGTTAGGAAAAAGTATATCCACGGCTTAACCTACAAGTTTGGAGAAACCGTTAAAGCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

187

Amino Acids

22.45

Weight (kDa)

5.38

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	5 - 158	3.8e-61	ARD/ARD' family
AraC_binding	PF02311	85 - 141	4.7e-06	AraC-like ligand binding domain
Cupin_2	PF07883	87 - 138	1.8e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43850
fragaria_vesca	FvH4_4g01130
malus_domestica	MD16G1199500.v1.1
prunus_persica	Prupe.1G021000_v2.0.a1 Prupe.1G021000_v2.0.a1
pyrus_communis	pycom16g16800
rosa_chinensis	RchiOBHm_Chr4g0387701
rosa_laevigata	RLG00000010100
rosa_multiflora	Rmu_sc0003953.1_g000019 Rmu_sc0006621.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334350
rosa_rugosa	Rorug03G0312800
rosa_samantha	Rh4AG017800 Rh4BG012700 Rh4CG019000 Rh4DG013600
rosa_wichuraiana	Rw4G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	213, 340, 353
AcoI	YGGCCR	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	2 cut(s)	116, 293
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgeI	ACCGGT	2 cut(s)	402, 460
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	244, 436
AluI	AGCT	2 cut(s)	244, 436
Alw26I	GTCTC	2 cut(s)	40, 85
AlwI	GGATC	3 cut(s)	213, 340, 353
Ama87I	CYCGRG	2 cut(s)	8, 215
AoxI	GGCC	1 cut(s)	482
AsiGI	ACCGGT	2 cut(s)	402, 460
Asp700I	GAANNNNTTC	3 cut(s)	254, 267, 285
AspS9I	GGNCC	1 cut(s)	40
AvaI	CYCGRG	2 cut(s)	8, 215
AvaII	GGWCC	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	40, 85
BfaI	CTAG	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	2 cut(s)	8, 215
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	2 cut(s)	347, 459
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BsaBI	GATNNNNATC	1 cut(s)	350
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	2 cut(s)	402, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse118I	RCCGGY	3 cut(s)	402, 460, 480
Bse1I	ACTGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	4 cut(s)	31, 340, 363, 496
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	484
BshTI	ACCGGT	2 cut(s)	402, 460
BsiHKCI	CYCGRG	2 cut(s)	8, 215
BsiSI	CCGG	4 cut(s)	390, 403, 461, 481
BslFI	GGGAC	2 cut(s)	198, 341
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	40, 85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	198, 341
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	2 cut(s)	8, 215
Bsp143I	GATC	4 cut(s)	205, 337, 345, 370
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	2 cut(s)	347, 459
BspPI	GGATC	3 cut(s)	213, 340, 353
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	3 cut(s)	402, 460, 480
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	3 cut(s)	402, 460, 480
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	4 cut(s)	205, 337, 345, 370
BssNI	GRCGYC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	421
BstDEI	CTNAG	2 cut(s)	132, 158
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	4 cut(s)	31, 340, 363, 496
BstKTI	GATC	4 cut(s)	208, 340, 348, 373
BstMAI	GTCTC	2 cut(s)	40, 85
BstMBI	GATC	4 cut(s)	205, 337, 345, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 442
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	205, 345
BstYI	RGATCY	2 cut(s)	205, 345
BsuRI	GGCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	31, 340, 363, 496
Cac8I	GCNNGC	1 cut(s)	421
Cfr10I	RCCGGY	3 cut(s)	402, 460, 480
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	115, 292
CspAI	ACCGGT	2 cut(s)	402, 460
CviAII	CATG	2 cut(s)	15, 193
CviJI	RGCY	7 cut(s)	5, 244, 312, 436, 445, 484, 525
CviKI_1	RGCY	7 cut(s)	5, 244, 312, 436, 445, 484, 525
CviQI	GTAC	2 cut(s)	115, 292
DdeI	CTNAG	2 cut(s)	132, 158
DpnI	GATC	4 cut(s)	207, 339, 347, 372
DpnII	GATC	4 cut(s)	205, 337, 345, 370
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	2 cut(s)	8, 215
EcoRII	CCWGG	1 cut(s)	364
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	18, 196
FaiI	YATR	6 cut(s)	16, 23, 194, 475, 477, 516
FaqI	GGGAC	2 cut(s)	198, 341
FatI	CATG	2 cut(s)	14, 192
FokI	GGATG	4 cut(s)	38, 347, 370, 483
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	484
HapII	CCGG	4 cut(s)	390, 403, 461, 481
HgaI	GACGC	1 cut(s)	425
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	18, 196
HinfI	GANTC	3 cut(s)	149, 286, 393
HpaII	CCGG	4 cut(s)	390, 403, 461, 481
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	3 cut(s)	8, 215, 355
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 442
HpyF3I	CTNAG	2 cut(s)	132, 158
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	18, 196
Kzo9I	GATC	4 cut(s)	205, 337, 345, 370
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	62, 182
MalI	GATC	4 cut(s)	207, 339, 347, 372
MboI	GATC	4 cut(s)	205, 337, 345, 370
MboII	GAAGA	5 cut(s)	185, 248, 259, 293, 503
MflI	RGATCY	2 cut(s)	205, 345
MmeI	TCCRAC	2 cut(s)	66, 323
MnlI	CCTC	4 cut(s)	4, 31, 63, 435
MroXI	GAANNNNTTC	3 cut(s)	254, 267, 285
MseI	TTAA	3 cut(s)	527, 552, 562
MspI	CCGG	4 cut(s)	390, 403, 461, 481
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	11, 442
NdeII	GATC	4 cut(s)	205, 337, 345, 370
NlaIII	CATG	2 cut(s)	18, 196
NlaIV	GGNNCC	2 cut(s)	347, 459
PaeR7I	CTCGAG	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PdmI	GAANNNNTTC	3 cut(s)	254, 267, 285
PfeI	GAWTC	3 cut(s)	149, 286, 393
PinAI	ACCGGT	2 cut(s)	402, 460
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	347, 459
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	205, 345
RsaI	GTAC	2 cut(s)	116, 293
RsaNI	GTAC	2 cut(s)	115, 292
SaqAI	TTAA	3 cut(s)	527, 552, 562
Sau3AI	GATC	4 cut(s)	205, 337, 345, 370
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	4 cut(s)	246, 367, 438, 533
SfaNI	GCATC	1 cut(s)	348
Sfr274I	CTCGAG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	40
SlaI	CTCGAG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	9, 414
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	149, 286, 393
Tru1I	TTAA	3 cut(s)	527, 552, 562
Tru9I	TTAA	3 cut(s)	527, 552, 562
TspGWI	ACGGA	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	40
XhoI	CTCGAG	1 cut(s)	8
XmnI	GAANNNNTTC	3 cut(s)	254, 267, 285
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.