Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014076

Physical Location & Seq

Genomic Coordinates Forward (+)

18029837 .. 18031594

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1199500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCGATGGAGGCATGGTTCATGAAGGACAGCGATTCAGACCCAAGGCTTCCTCAGCATCGCAACCCCAAAGAGTTTGTTCCTTTGGACCATTTGGCAGAGCTGGGTGTGCTCCACTGGCGCTTGAACCCAACGGATTATGAAAACGATCAAGAACTGCGCAAAATTAGGGAAACCAGGGGATATAATTACATGGATTTGCTTGACATATGCCCACAGAAATTGAACAATTATGAGGACAAGTTGAAGAACTTCTACACAGAGCACATACATGCTGATGAGGAGATACGCTACTGTTTAGAGGGAAGCGGGTACTTTGATGTCCGAGGGAAGGATGACCGTTGGATTCGAATTTGGATTAAGGCCGGTGATCTTATCATTTTGCCCGCTGGGATTTACCACAGGTTCACCCTTGATACCACCAATTATGTTAAGTTGATGAGGCTGTTTATGGGAGAGCCTGTGTGGACTGCGTATAATCGGCCACAGGAAGAACATCCGGCTAGGAAGGAGTATGTAGAGAGCTTCACTAAGAAAGTAGGAGTGGCATTAAAAGCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

188

Amino Acids

22.36

Weight (kDa)

6.07

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	5 - 158	8.3e-59	ARD/ARD' family
AraC_binding	PF02311	85 - 163	2.3e-07	AraC-like ligand binding domain
Cupin_2	PF07883	88 - 146	1.3e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43850
fragaria_vesca	FvH4_4g01130
malus_domestica	MD16G1199500.v1.1
prunus_persica	Prupe.1G021000_v2.0.a1 Prupe.1G021000_v2.0.a1
pyrus_communis	pycom16g16800
rosa_chinensis	RchiOBHm_Chr4g0387701
rosa_laevigata	RLG00000010100
rosa_multiflora	Rmu_sc0003953.1_g000019 Rmu_sc0006621.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334350
rosa_rugosa	Rorug03G0312800
rosa_samantha	Rh4AG017800 Rh4BG012700 Rh4CG019000 Rh4DG013600
rosa_wichuraiana	Rw4G001160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
AciI	CCGC	2 cut(s)	309, 387
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	127, 226, 247
AjnI	CCWGG	1 cut(s)	176
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	3 cut(s)	103, 525, 557
AluI	AGCT	3 cut(s)	103, 525, 557
Alw21I	GWGCWC	2 cut(s)	114, 267
AoxI	GGCC	2 cut(s)	363, 482
ApoI	RAATTY	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	2 cut(s)	123, 162
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	380, 400
AsuII	TTCGAA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	88
BarI	GAAGNNNNNNTAC	2 cut(s)	239, 271
Bbv12I	GWGCWC	2 cut(s)	114, 267
BbvCI	CCTCAGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	178
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	349
BsaJI	CCNNGG	3 cut(s)	44, 177, 325
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	3 cut(s)	44, 177, 325
BseGI	GGATG	2 cut(s)	340, 496
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	296
BseYI	CCCAGC	2 cut(s)	103, 389
BshFI	GGCC	2 cut(s)	365, 484
BsiHKAI	GWGCWC	2 cut(s)	114, 267
BsiSI	CCGG	2 cut(s)	366, 500
BslI	CCNNNNNNNGG	1 cut(s)	331
BsnI	GGCC	2 cut(s)	365, 484
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	114, 267
Bsp143I	GATC	2 cut(s)	148, 370
BspACI	CCGC	2 cut(s)	309, 387
BspANI	GGCC	2 cut(s)	365, 484
BspCNI	CTCAG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	44, 177, 325
BssMI	GATC	2 cut(s)	148, 370
BssT1I	CCWWGG	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	296, 341
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	54, 531
BstF5I	GGATG	2 cut(s)	340, 496
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 162
BstKTI	GATC	2 cut(s)	151, 373
BstMBI	GATC	2 cut(s)	148, 370
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 55, 109, 118, 554
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	365, 484
BtgZI	GCGATG	2 cut(s)	20, 44
BtsCI	GGATG	2 cut(s)	340, 496
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	387
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	2 cut(s)	123, 162
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	4 cut(s)	15, 22, 193, 272
CviJI	RGCY	9 cut(s)	49, 103, 365, 445, 460, 484, 503, 525, 557
CviKI_1	RGCY	9 cut(s)	49, 103, 365, 445, 460, 484, 503, 525, 557
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	54, 531
DpnI	GATC	2 cut(s)	150, 372
DpnII	GATC	2 cut(s)	148, 370
EaeI	YGGCCR	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	4 cut(s)	18, 25, 196, 275
FatI	CATG	4 cut(s)	14, 21, 192, 271
FauI	CCCGC	2 cut(s)	302, 394
FauNDI	CATATG	1 cut(s)	209
FokI	GGATG	2 cut(s)	347, 483
FspBI	CTAG	1 cut(s)	504
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	2 cut(s)	122, 161
GsaI	CCCAGC	2 cut(s)	107, 393
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	365, 484
HapII	CCGG	2 cut(s)	366, 500
HhaI	GCGC	2 cut(s)	123, 162
Hin1II	CATG	4 cut(s)	18, 25, 196, 275
Hin6I	GCGC	2 cut(s)	121, 160
HinP1I	GCGC	2 cut(s)	121, 160
HinfI	GANTC	2 cut(s)	35, 346
HpaII	CCGG	2 cut(s)	366, 500
HphI	GGTGA	2 cut(s)	380, 400
Hpy166II	GTNNAC	2 cut(s)	408, 468
Hpy188I	TCNGA	2 cut(s)	40, 326
Hpy188III	TCNNGA	2 cut(s)	22, 152
Hpy8I	GTNNAC	2 cut(s)	408, 468
HpyAV	CCTTC	3 cut(s)	19, 325, 502
HpyCH4III	ACNGT	2 cut(s)	296, 341
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 55, 109, 118, 554
HpyF3I	CTNAG	2 cut(s)	54, 531
Hsp92II	CATG	4 cut(s)	18, 25, 196, 275
HspAI	GCGC	2 cut(s)	121, 160
Kzo9I	GATC	2 cut(s)	148, 370
LmnI	GCTCC	1 cut(s)	117
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	504
MalI	GATC	2 cut(s)	150, 372
MboI	GATC	2 cut(s)	148, 370
MboII	GAAGA	2 cut(s)	259, 503
MhlI	GDGCHC	2 cut(s)	114, 267
MluCI	AATT	6 cut(s)	165, 187, 221, 229, 351, 424
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	4, 63, 229, 274, 295, 320, 435
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	4 cut(s)	360, 432, 551, 562
MslI	CAYNNNNRTG	2 cut(s)	270, 276
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	366, 500
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	5 cut(s)	11, 55, 109, 118, 554
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	2 cut(s)	148, 370
NlaIII	CATG	4 cut(s)	18, 25, 196, 275
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	1 cut(s)	275
NspV	TTCGAA	1 cut(s)	349
PagI	TCATGA	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	35, 346
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	2 cut(s)	103, 389
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	2 cut(s)	270, 276
SaqAI	TTAA	4 cut(s)	360, 432, 551, 562
Sau3AI	GATC	2 cut(s)	148, 370
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	114, 267
SetI	ASST	4 cut(s)	105, 407, 527, 559
SfaNI	GCATC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	349
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	270, 276
Sse9I	AATT	6 cut(s)	165, 187, 221, 229, 351, 424
SsiI	CCGC	2 cut(s)	309, 387
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	296, 341
TaqI	TCGA	1 cut(s)	349
TasI	AATT	6 cut(s)	165, 187, 221, 229, 351, 424
TfiI	GAWTC	2 cut(s)	35, 346
Tru1I	TTAA	4 cut(s)	360, 432, 551, 562
Tru9I	TTAA	4 cut(s)	360, 432, 551, 562
TscAI	CASTG	1 cut(s)	122
TspDTI	ATGAA	3 cut(s)	10, 38, 156
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.